Wall clock time and date at job start Mon Mar 30 2020 05:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00360 * 2 1 4 4 H 1.48504 * 109.46890 * 270.00120 * 3 2 1 5 5 H 1.48497 * 109.46778 * 29.99928 * 3 2 1 6 6 H 1.48499 * 109.47193 * 150.00386 * 3 2 1 7 7 C 1.37882 * 119.99683 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00262 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99816 * 179.97438 * 7 2 1 10 10 H 1.09002 * 109.48161 * 299.99899 * 9 7 2 11 11 C 1.53093 * 109.47903 * 179.97438 * 9 7 2 12 12 C 1.53178 * 109.16255 * 182.39629 * 11 9 7 13 13 C 1.53178 * 109.03511 * 56.98447 * 12 11 9 14 14 C 1.53096 * 109.16278 * 303.01594 * 13 12 11 15 15 H 1.08992 * 109.48175 * 297.62679 * 14 13 12 16 16 C 1.50697 * 109.48058 * 177.60246 * 14 13 12 17 17 C 1.38422 * 122.54021 * 100.00073 * 16 14 13 18 18 C 1.33389 * 114.92326 * 179.97438 * 17 16 14 19 19 S 1.75887 * 109.59400 * 0.02562 * 18 17 16 20 20 C 1.33396 * 122.54225 * 279.70957 * 16 14 13 21 21 O 1.42904 * 109.47876 * 60.02369 * 9 7 2 22 22 H 0.97003 * 119.99956 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.52228 * 302.30610 * 11 9 7 24 24 H 1.08998 * 109.52401 * 62.49459 * 11 9 7 25 25 H 1.09002 * 109.54461 * 176.84793 * 12 11 9 26 26 H 1.08992 * 109.54753 * 297.02597 * 12 11 9 27 27 H 1.08999 * 109.52488 * 62.92180 * 13 12 11 28 28 H 1.09004 * 109.52654 * 183.11392 * 13 12 11 29 29 H 1.08005 * 122.53773 * 359.95891 * 17 16 14 30 30 H 1.08000 * 125.20534 * 180.02562 * 18 17 16 31 31 H 1.08001 * 125.19714 * 0.02672 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 -0.0011 10 1 3.8746 -0.6802 -0.8911 11 6 4.0219 -2.6375 -0.0010 12 6 5.5525 -2.6295 0.0589 13 6 5.9998 -1.8546 1.3023 14 6 5.4129 -0.4415 1.2518 15 1 5.8010 0.0823 0.3783 16 6 5.7999 0.3083 2.5004 17 6 6.8426 1.2183 2.5295 18 6 7.0528 1.7947 3.7139 19 16 5.8913 1.1806 4.8832 20 6 5.1601 0.1495 3.6601 21 8 3.9884 -0.5213 1.1659 22 1 -0.4850 0.8401 0.0004 23 1 3.6261 -3.1638 0.8676 24 1 3.6957 -3.1393 -0.9119 25 1 5.9206 -3.6539 0.1158 26 1 5.9499 -2.1483 -0.8347 27 1 5.6439 -2.3651 2.1972 28 1 7.0880 -1.7965 1.3234 29 1 7.4408 1.4443 1.6590 30 1 7.8190 2.5266 3.9229 31 1 4.3228 -0.5128 3.8236 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307093380.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:23 Heat of formation + Delta-G solvation = -18.013752 kcal Electronic energy + Delta-G solvation = -15159.531305 eV Core-core repulsion = 12725.467415 eV Total energy + Delta-G solvation = -2434.063889 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.10836 -37.01937 -32.92540 -32.63461 -30.89677 -28.67860 -26.18051 -24.50914 -22.38069 -21.46463 -19.42054 -18.47363 -17.41598 -16.70289 -15.73787 -15.07627 -14.37394 -14.12135 -13.90819 -13.38350 -12.90862 -12.57141 -12.49752 -12.22716 -12.14929 -11.88220 -11.11450 -11.01804 -10.75118 -10.55502 -10.49043 -9.99820 -9.90840 -9.59784 -9.10706 -8.56633 -8.55517 -8.30943 -7.95037 -6.10537 -4.18714 1.26403 1.88627 2.20227 2.93941 3.40025 3.48391 3.71838 4.55286 4.64371 5.16488 5.30527 5.40589 5.41686 5.54151 5.58663 5.72107 5.90556 5.95016 5.96314 6.18526 6.24260 6.33883 6.51527 6.58026 6.62860 6.67638 6.68925 6.86874 7.20897 7.64936 8.43331 8.55013 8.92511 9.53991 10.99581 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.023154 B = 0.009961 C = 0.007914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.981747 B = 2810.213773 C = 3537.373241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.085 3.915 3 Si 0.869 3.131 4 H -0.288 1.288 5 H -0.293 1.293 6 H -0.221 1.221 7 C -0.516 4.516 8 H 0.079 0.921 9 C 0.184 3.816 10 H 0.012 0.988 11 C -0.134 4.134 12 C -0.123 4.123 13 C -0.136 4.136 14 C 0.140 3.860 15 H 0.051 0.949 16 C -0.096 4.096 17 C -0.121 4.121 18 C -0.222 4.222 19 S 0.066 5.934 20 C -0.171 4.171 21 O -0.368 6.368 22 H 0.265 0.735 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.137 0.863 30 H 0.160 0.840 31 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.790 0.930 5.604 15.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.120 4.120 3 Si 0.696 3.304 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.143 1.143 7 C -0.552 4.552 8 H 0.097 0.903 9 C 0.129 3.871 10 H 0.030 0.970 11 C -0.172 4.172 12 C -0.160 4.160 13 C -0.174 4.174 14 C 0.079 3.921 15 H 0.069 0.931 16 C -0.108 4.108 17 C -0.152 4.152 18 C -0.357 4.357 19 S 0.329 5.671 20 C -0.306 4.306 21 O -0.289 6.289 22 H 0.075 0.925 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.155 0.845 30 H 0.178 0.822 31 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 14.241 1.379 7.306 16.065 hybrid contribution 0.665 0.565 -1.683 1.895 sum 14.906 1.944 5.624 16.049 Atomic orbital electron populations 1.69929 1.06723 1.27473 1.48692 1.25047 0.94638 0.99905 0.92412 0.87059 0.83223 0.82103 0.78053 1.21438 1.21991 1.14306 1.20921 0.87392 0.94802 1.52096 0.90282 1.20168 0.94985 0.87757 0.84194 0.97023 1.22065 0.93053 1.00206 1.01859 1.21660 0.97791 0.99277 0.97310 1.22112 0.99611 0.96521 0.99153 1.20334 0.86455 0.92917 0.92420 0.93117 1.18875 0.96834 0.99355 0.95727 1.20032 0.99126 0.97841 0.98228 1.25417 1.05613 1.07778 0.96870 1.84098 1.28339 1.39687 1.15013 1.25520 1.04866 1.05106 0.95152 1.88474 1.15462 1.77652 1.47269 0.92526 0.91914 0.91925 0.92606 0.92560 0.91439 0.92267 0.84514 0.82204 0.81240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.54 13.96 55.43 0.77 -26.77 16 2 C 0.08 2.49 5.47 -17.82 -0.10 2.39 16 3 Si 0.87 22.25 26.99 -169.99 -4.59 17.66 16 4 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 5 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 6 H -0.22 -5.46 5.16 56.52 0.29 -5.17 16 7 C -0.52 -14.69 9.38 -34.44 -0.32 -15.01 16 8 H 0.08 2.40 7.99 -52.49 -0.42 1.98 16 9 C 0.18 4.39 1.99 -27.84 -0.06 4.33 16 10 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 11 C -0.13 -2.67 5.36 -26.59 -0.14 -2.81 16 12 C -0.12 -1.99 6.03 -26.55 -0.16 -2.15 16 13 C -0.14 -2.19 5.40 -26.59 -0.14 -2.33 16 14 C 0.14 2.61 2.76 -27.83 -0.08 2.53 16 15 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 16 C -0.10 -1.66 4.88 -106.25 -0.52 -2.18 16 17 C -0.12 -1.77 9.95 -41.21 -0.41 -2.18 16 18 C -0.22 -2.89 11.23 29.04 0.33 -2.57 16 19 S 0.07 0.91 23.34 -107.50 -2.51 -1.60 16 20 C -0.17 -2.89 10.56 29.04 0.31 -2.58 16 21 O -0.37 -8.51 6.54 -35.23 -0.23 -8.74 16 22 H 0.27 7.71 8.31 -40.82 -0.34 7.37 16 23 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 24 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.14 1.71 8.06 -52.48 -0.42 1.29 16 30 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 31 H 0.17 2.96 8.05 -52.49 -0.42 2.54 16 LS Contribution 268.17 15.07 4.04 4.04 Total: -1.00 -30.78 268.17 -8.09 -38.87 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -4.28 Total: -0.91 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: -1.29 Total: -22.55 kcal Atomic # 7 Polarization: -27.54 SS G_CDS: 0.77 Total: -26.77 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: -0.23 Total: -8.74 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.59 Total: 17.66 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -2.51 Total: -1.60 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -30.78 -8.09 -38.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307093380.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.854 kcal (2) G-P(sol) polarization free energy of solvation -30.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds