Wall clock time and date at job start Mon Mar 30 2020 05:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00360 * 2 1 4 4 H 1.48504 * 109.46890 * 270.00120 * 3 2 1 5 5 H 1.48497 * 109.46778 * 29.99928 * 3 2 1 6 6 H 1.48499 * 109.47193 * 150.00386 * 3 2 1 7 7 C 1.37882 * 119.99683 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00262 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99816 * 179.97438 * 7 2 1 10 10 H 1.09002 * 109.48161 * 299.99899 * 9 7 2 11 11 C 1.53093 * 109.47903 * 179.97438 * 9 7 2 12 12 C 1.53178 * 109.16255 * 182.39629 * 11 9 7 13 13 C 1.53178 * 109.03511 * 56.98447 * 12 11 9 14 14 C 1.53096 * 109.16278 * 303.01594 * 13 12 11 15 15 H 1.08992 * 109.48175 * 297.62679 * 14 13 12 16 16 C 1.50697 * 109.48058 * 177.60246 * 14 13 12 17 17 C 1.38422 * 122.54021 * 100.00073 * 16 14 13 18 18 C 1.33389 * 114.92326 * 179.97438 * 17 16 14 19 19 S 1.75887 * 109.59400 * 0.02562 * 18 17 16 20 20 C 1.33396 * 122.54225 * 279.70957 * 16 14 13 21 21 O 1.42904 * 109.47876 * 60.02369 * 9 7 2 22 22 H 0.97003 * 119.99956 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.52228 * 302.30610 * 11 9 7 24 24 H 1.08998 * 109.52401 * 62.49459 * 11 9 7 25 25 H 1.09002 * 109.54461 * 176.84793 * 12 11 9 26 26 H 1.08992 * 109.54753 * 297.02597 * 12 11 9 27 27 H 1.08999 * 109.52488 * 62.92180 * 13 12 11 28 28 H 1.09004 * 109.52654 * 183.11392 * 13 12 11 29 29 H 1.08005 * 122.53773 * 359.95891 * 17 16 14 30 30 H 1.08000 * 125.20534 * 180.02562 * 18 17 16 31 31 H 1.08001 * 125.19714 * 0.02672 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 -0.0011 10 1 3.8746 -0.6802 -0.8911 11 6 4.0219 -2.6375 -0.0010 12 6 5.5525 -2.6295 0.0589 13 6 5.9998 -1.8546 1.3023 14 6 5.4129 -0.4415 1.2518 15 1 5.8010 0.0823 0.3783 16 6 5.7999 0.3083 2.5004 17 6 6.8426 1.2183 2.5295 18 6 7.0528 1.7947 3.7139 19 16 5.8913 1.1806 4.8832 20 6 5.1601 0.1495 3.6601 21 8 3.9884 -0.5213 1.1659 22 1 -0.4850 0.8401 0.0004 23 1 3.6261 -3.1638 0.8676 24 1 3.6957 -3.1393 -0.9119 25 1 5.9206 -3.6539 0.1158 26 1 5.9499 -2.1483 -0.8347 27 1 5.6439 -2.3651 2.1972 28 1 7.0880 -1.7965 1.3234 29 1 7.4408 1.4443 1.6590 30 1 7.8190 2.5266 3.9229 31 1 4.3228 -0.5128 3.8236 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307093380.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:23 Heat of formation + Delta-G solvation = -36.484708 kcal Electronic energy + Delta-G solvation = -15160.332265 eV Core-core repulsion = 12725.467415 eV Total energy + Delta-G solvation = -2434.864850 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.57299 -38.35732 -34.88452 -34.29646 -32.52422 -30.01128 -27.94296 -25.97604 -23.77891 -23.06948 -20.95066 -19.70058 -19.02524 -18.40075 -17.21339 -16.83976 -15.96848 -15.65784 -15.40903 -14.96751 -14.32259 -14.31367 -13.86563 -13.59193 -13.37568 -13.28042 -12.94108 -12.62987 -12.34852 -12.02947 -11.98460 -11.76669 -11.56454 -11.28810 -10.98092 -10.72533 -9.93965 -9.63749 -9.22916 -8.36730 -6.48839 0.13093 0.78123 1.09213 1.34791 1.39245 1.66364 1.78037 2.41755 2.86102 3.45584 4.01125 4.07089 4.09805 4.22633 4.36219 4.39588 4.41564 4.60967 4.72397 4.79098 4.94664 5.03912 5.08367 5.16192 5.20129 5.26331 5.46303 5.51931 5.58262 5.67289 6.22791 6.55546 6.90274 7.28641 8.77248 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.023154 B = 0.009961 C = 0.007914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.981747 B = 2810.213773 C = 3537.373241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.028 3.972 3 Si 0.934 3.066 4 H -0.277 1.277 5 H -0.298 1.298 6 H -0.207 1.207 7 C -0.526 4.526 8 H 0.041 0.959 9 C 0.188 3.812 10 H 0.014 0.986 11 C -0.132 4.132 12 C -0.115 4.115 13 C -0.129 4.129 14 C 0.129 3.871 15 H 0.058 0.942 16 C -0.108 4.108 17 C -0.139 4.139 18 C -0.204 4.204 19 S 0.095 5.905 20 C -0.207 4.207 21 O -0.392 6.392 22 H 0.267 0.733 23 H 0.047 0.953 24 H 0.063 0.937 25 H 0.083 0.917 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.091 0.909 29 H 0.160 0.840 30 H 0.197 0.803 31 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.345 2.120 5.941 19.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.204 1.204 5 H -0.225 1.225 6 H -0.129 1.129 7 C -0.563 4.563 8 H 0.059 0.941 9 C 0.132 3.868 10 H 0.032 0.968 11 C -0.170 4.170 12 C -0.152 4.152 13 C -0.167 4.167 14 C 0.069 3.931 15 H 0.076 0.924 16 C -0.120 4.120 17 C -0.169 4.169 18 C -0.339 4.339 19 S 0.358 5.642 20 C -0.342 4.342 21 O -0.313 6.313 22 H 0.076 0.924 23 H 0.066 0.934 24 H 0.082 0.918 25 H 0.102 0.898 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.109 0.891 29 H 0.177 0.823 30 H 0.214 0.786 31 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 17.817 2.553 7.647 19.557 hybrid contribution -0.429 0.142 -1.712 1.771 sum 17.389 2.696 5.935 18.570 Atomic orbital electron populations 1.70061 1.08428 1.28365 1.51036 1.25920 0.95332 1.03608 0.92279 0.86064 0.82226 0.77491 0.78468 1.20354 1.22521 1.12874 1.21248 0.90446 0.93292 1.51319 0.94099 1.19922 0.92098 0.90312 0.84458 0.96831 1.21978 0.96342 0.97410 1.01251 1.21628 0.94259 1.01290 0.98028 1.22066 1.01329 0.94651 0.98660 1.20645 0.83719 0.95000 0.93723 0.92373 1.18994 0.97956 1.00116 0.94914 1.20184 0.99083 0.97795 0.99796 1.25896 1.05152 1.07041 0.95794 1.83996 1.27906 1.38327 1.13965 1.25519 1.05334 1.06506 0.96848 1.88331 1.18900 1.77723 1.46364 0.92430 0.93436 0.91843 0.89816 0.91122 0.92307 0.89053 0.82255 0.78602 0.83292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.31 13.96 21.45 0.30 -60.01 16 2 C 0.03 1.70 5.47 84.66 0.46 2.16 16 3 Si 0.93 46.64 26.99 68.60 1.85 48.49 16 4 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 5 H -0.30 -15.01 7.11 99.48 0.71 -14.30 16 6 H -0.21 -9.79 5.16 99.48 0.51 -9.28 16 7 C -0.53 -31.07 9.38 25.60 0.24 -30.83 16 8 H 0.04 2.64 7.99 -2.91 -0.02 2.61 16 9 C 0.19 8.95 1.99 29.88 0.06 9.01 16 10 H 0.01 0.66 7.57 -2.39 -0.02 0.64 16 11 C -0.13 -5.20 5.36 30.68 0.16 -5.04 16 12 C -0.11 -3.37 6.03 30.71 0.19 -3.19 16 13 C -0.13 -3.79 5.40 30.69 0.17 -3.63 16 14 C 0.13 4.55 2.76 29.88 0.08 4.64 16 15 H 0.06 1.96 8.08 -2.39 -0.02 1.94 16 16 C -0.11 -3.46 4.88 -20.92 -0.10 -3.56 16 17 C -0.14 -3.52 9.95 21.22 0.21 -3.31 16 18 C -0.20 -4.44 11.23 66.72 0.75 -3.69 16 19 S 0.09 2.38 23.34 -56.49 -1.32 1.06 16 20 C -0.21 -6.77 10.56 66.72 0.70 -6.07 16 21 O -0.39 -17.94 6.54 -148.98 -0.97 -18.92 16 22 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16 23 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 25 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.16 3.25 8.06 -2.91 -0.02 3.23 16 30 H 0.20 2.79 8.06 -2.91 -0.02 2.77 16 31 H 0.15 5.37 8.05 -2.91 -0.02 5.34 16 Total: -1.00 -68.67 268.17 3.69 -64.98 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: 0.91 Total: 7.89 kcal Atomic # 6 Polarization: -46.42 SS G_CDS: 2.92 Total: -43.50 kcal Atomic # 7 Polarization: -60.31 SS G_CDS: 0.30 Total: -60.01 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.97 Total: -18.92 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 1.85 Total: 48.49 kcal Atomic # 16 Polarization: 2.38 SS G_CDS: -1.32 Total: 1.06 kcal Total: -68.67 3.69 -64.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307093380.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.494 kcal (2) G-P(sol) polarization free energy of solvation -68.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds