Wall clock time and date at job start Mon Mar 30 2020 05:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86797 * 120.00358 * 2 1 4 4 H 1.48500 * 109.47088 * 274.99549 * 3 2 1 5 5 H 1.48500 * 109.47034 * 34.99111 * 3 2 1 6 6 H 1.48499 * 109.47242 * 154.98986 * 3 2 1 7 7 C 1.40100 * 119.99613 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99958 * 186.56254 * 7 2 1 9 9 C 1.39886 * 120.00284 * 6.55753 * 7 2 1 10 10 C 1.36997 * 124.83713 * 173.23820 * 9 7 2 11 11 C 1.39708 * 115.05200 * 180.02562 * 10 9 7 12 12 C 1.42072 * 128.44105 * 180.02562 * 11 10 9 13 13 C 1.35780 * 120.58296 * 179.97438 * 12 11 10 14 14 C 1.39496 * 120.59939 * 0.27094 * 13 12 11 15 15 O 1.35849 * 119.95795 * 179.70421 * 14 13 12 16 16 C 1.38424 * 120.08430 * 359.47031 * 14 13 12 17 17 F 1.35098 * 119.89475 * 180.27052 * 16 14 13 18 18 C 1.39585 * 120.21789 * 0.51166 * 16 14 13 19 19 S 1.75463 * 124.83195 * 353.26131 * 9 7 2 20 20 H 0.97006 * 119.99745 * 359.97438 * 1 2 3 21 21 H 1.07997 * 122.47304 * 0.02562 * 10 9 7 22 22 H 1.07989 * 119.70697 * 359.97438 * 12 11 10 23 23 H 1.08006 * 119.69192 * 180.02562 * 13 12 11 24 24 H 0.96703 * 114.00074 * 89.99740 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3842 2.1073 -1.3948 5 1 1.4965 2.6199 0.8029 6 1 3.5886 1.4119 0.5919 7 6 2.0086 -1.2133 -0.0005 8 1 3.0833 -1.2165 0.1064 9 6 1.3160 -2.4208 -0.1394 10 6 1.9055 -3.6488 -0.2851 11 6 1.0175 -4.7204 -0.4080 12 6 1.3153 -6.1001 -0.5701 13 6 0.3171 -7.0147 -0.6738 14 6 -1.0189 -6.6159 -0.6288 15 8 -2.0072 -7.5413 -0.7398 16 6 -1.3389 -5.2790 -0.4662 17 9 -2.6340 -4.8977 -0.4176 18 6 -0.3277 -4.3228 -0.3574 19 16 -0.4315 -2.5780 -0.1524 20 1 -0.4850 0.8401 0.0004 21 1 2.9774 -3.7789 -0.3036 22 1 2.3446 -6.4242 -0.6112 23 1 0.5598 -8.0600 -0.7963 24 1 -2.2947 -7.9130 0.1053 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307098014.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:19 Heat of formation + Delta-G solvation = -92.800712 kcal Electronic energy + Delta-G solvation = -13925.988801 eV Core-core repulsion = 11229.388506 eV Total energy + Delta-G solvation = -2696.600295 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.81418 -40.21918 -38.16637 -36.53121 -34.33129 -31.22611 -30.36581 -27.01027 -24.40163 -23.24067 -21.34563 -20.03727 -19.37725 -17.84578 -17.77313 -16.99950 -16.57456 -16.43395 -15.58502 -15.23884 -14.97570 -14.39493 -14.02102 -13.92198 -13.64021 -13.14438 -13.01979 -12.50401 -12.37407 -11.97009 -11.91330 -11.49935 -11.06442 -10.98367 -10.21008 -9.24607 -9.00290 -8.36513 -6.64154 0.03280 0.43542 1.21588 1.23897 1.35901 1.55669 1.74297 1.78985 2.10529 2.67052 3.08375 3.28318 3.57826 4.14517 4.37230 4.53906 4.84094 4.90836 5.16966 5.20732 5.34186 5.42557 5.60072 5.83202 5.95500 6.07105 6.35104 6.44765 6.91922 7.87253 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.051310 B = 0.007361 C = 0.006461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.568887 B = 3802.717338 C = 4332.326840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.013 3.987 3 Si 1.018 2.982 4 H -0.258 1.258 5 H -0.260 1.260 6 H -0.247 1.247 7 C -0.396 4.396 8 H 0.114 0.886 9 C 0.028 3.972 10 C -0.382 4.382 11 C 0.015 3.985 12 C -0.145 4.145 13 C -0.093 4.093 14 C -0.008 4.008 15 O -0.493 6.493 16 C 0.110 3.890 17 F -0.152 7.152 18 C -0.328 4.328 19 S 0.126 5.874 20 H 0.315 0.685 21 H 0.120 0.880 22 H 0.143 0.857 23 H 0.161 0.839 24 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.646 -2.493 1.167 3.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.206 4.206 3 Si 0.836 3.164 4 H -0.182 1.182 5 H -0.184 1.184 6 H -0.170 1.170 7 C -0.429 4.429 8 H 0.131 0.869 9 C -0.092 4.092 10 C -0.406 4.406 11 C 0.007 3.993 12 C -0.165 4.165 13 C -0.113 4.113 14 C -0.055 4.055 15 O -0.304 6.304 16 C 0.086 3.914 17 F -0.131 7.131 18 C -0.443 4.443 19 S 0.385 5.615 20 H 0.128 0.872 21 H 0.138 0.862 22 H 0.161 0.839 23 H 0.179 0.821 24 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 0.264 -1.224 0.701 1.436 hybrid contribution 0.826 -0.401 0.377 0.993 sum 1.091 -1.625 1.078 2.235 Atomic orbital electron populations 1.68704 1.09405 1.33016 1.30916 1.27447 0.95839 1.06413 0.90937 0.84595 0.78893 0.73028 0.79913 1.18245 1.18443 1.17043 1.19811 0.97057 0.89181 1.36883 0.86856 1.21884 0.94885 0.97133 0.95282 1.19793 0.98513 0.90660 1.31636 1.18215 0.90435 0.94945 0.95685 1.20839 1.00133 0.90164 1.05372 1.20764 0.89807 1.00981 0.99777 1.17953 0.89152 0.85169 1.13238 1.84808 1.53722 1.55976 1.35900 1.17611 0.76373 0.92815 1.04633 1.91357 1.35346 1.92286 1.94112 1.23685 0.96752 1.02703 1.21137 1.84873 1.05914 0.92746 1.77937 0.87154 0.86167 0.83948 0.82136 0.74872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -36.75 10.62 21.86 0.23 -36.52 14 2 C 0.01 0.58 5.49 85.30 0.47 1.05 14 3 Si 1.02 32.22 29.57 68.60 2.03 34.25 14 4 H -0.26 -7.97 7.11 99.48 0.71 -7.26 14 5 H -0.26 -7.79 7.11 99.48 0.71 -7.09 14 6 H -0.25 -7.48 7.11 99.48 0.71 -6.77 14 7 C -0.40 -19.07 9.26 23.12 0.21 -18.85 14 8 H 0.11 5.03 7.86 -2.91 -0.02 5.00 14 9 C 0.03 1.45 6.11 22.38 0.14 1.59 14 10 C -0.38 -19.09 10.14 22.33 0.23 -18.86 14 11 C 0.02 0.74 5.86 -21.45 -0.13 0.61 14 12 C -0.15 -5.69 10.03 22.65 0.23 -5.46 14 13 C -0.09 -3.29 9.88 22.00 0.22 -3.07 14 14 C -0.01 -0.31 6.71 22.62 0.15 -0.16 14 15 O -0.49 -16.65 13.34 -91.86 -1.23 -17.88 14 16 C 0.11 5.13 7.33 22.64 0.17 5.29 14 17 F -0.15 -7.11 17.09 44.97 0.77 -6.34 14 18 C -0.33 -16.53 6.44 23.11 0.15 -16.39 14 19 S 0.13 6.53 20.16 -56.49 -1.14 5.39 14 20 H 0.31 12.80 8.30 -92.70 -0.77 12.03 14 21 H 0.12 5.58 8.06 -2.91 -0.02 5.55 14 22 H 0.14 4.65 8.06 -2.92 -0.02 4.63 14 23 H 0.16 4.31 8.06 -2.91 -0.02 4.28 14 24 H 0.39 9.15 9.06 -74.05 -0.67 8.47 14 Total: -1.00 -59.58 238.74 3.08 -56.50 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 0.59 Total: 18.85 kcal Atomic # 6 Polarization: -56.08 SS G_CDS: 1.83 Total: -54.25 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.23 Total: -36.52 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -1.23 Total: -17.88 kcal Atomic # 9 Polarization: -7.11 SS G_CDS: 0.77 Total: -6.34 kcal Atomic # 14 Polarization: 32.22 SS G_CDS: 2.03 Total: 34.25 kcal Atomic # 16 Polarization: 6.53 SS G_CDS: -1.14 Total: 5.39 kcal Total: -59.58 3.08 -56.50 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307098014.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.299 kcal (2) G-P(sol) polarization free energy of solvation -59.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds