Wall clock time and date at job start Mon Mar 30 2020 05:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46847 * 2 1 4 4 Cl 1.80297 * 109.47306 * 119.99757 * 2 1 3 5 5 C 1.50699 * 109.47338 * 240.00145 * 2 1 3 6 6 O 1.21337 * 120.00316 * 92.06043 * 5 2 1 7 7 C 1.46600 * 119.99809 * 272.33532 * 5 2 1 8 8 C 1.39679 * 120.59257 * 101.98948 * 7 5 2 9 9 C 1.38021 * 120.02282 * 179.74299 * 8 7 5 10 10 C 1.38719 * 121.30461 * 0.57353 * 9 8 7 11 11 C 1.37508 * 121.22753 * 359.68194 * 10 9 8 12 12 C 1.40825 * 119.86331 * 0.03007 * 11 10 9 13 13 C 1.40723 * 120.61963 * 180.02562 * 12 11 10 14 14 H 1.07999 * 119.99775 * 151.49879 * 13 12 11 15 15 C 1.40394 * 120.00043 * 331.50125 * 13 12 11 16 16 N 1.30558 * 120.00223 * 349.02175 * 15 13 12 17 17 Si 1.86801 * 119.99987 * 169.02059 * 15 13 12 18 18 H 1.48506 * 109.47189 * 59.99888 * 17 15 13 19 19 H 1.48495 * 109.47408 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47043 * 299.99996 * 17 15 13 21 21 H 1.09002 * 109.46847 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47365 * 300.00276 * 1 2 3 23 23 H 1.09002 * 109.47091 * 60.00501 * 1 2 3 24 24 H 1.07999 * 119.99175 * 0.02562 * 8 7 5 25 25 H 1.08001 * 119.35151 * 180.27753 * 9 8 7 26 26 H 1.08001 * 119.38911 * 179.71770 * 10 9 8 27 27 H 1.08005 * 120.06759 * 180.02562 * 11 10 9 28 28 H 0.97005 * 120.00203 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 17 2.1310 -0.8499 1.4721 5 6 2.0324 -0.7104 -1.2305 6 8 2.2703 -0.0806 -2.2400 7 6 2.2279 -2.1631 -1.2096 8 6 1.2917 -3.0150 -1.8003 9 6 1.4903 -4.3807 -1.7784 10 6 2.6041 -4.9374 -1.1670 11 6 3.5559 -4.1484 -0.5651 12 6 3.4068 -2.7481 -0.5629 13 6 4.3714 -1.9255 0.0479 14 1 4.5303 -0.9201 -0.3130 15 6 5.1273 -2.4118 1.1265 16 7 4.7961 -3.5363 1.7012 17 14 6.6068 -1.4500 1.7392 18 1 6.1709 -0.1023 2.1853 19 1 7.2286 -2.1710 2.8787 20 1 7.5966 -1.3117 0.6409 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 0.4145 -2.6047 -2.2782 25 1 0.7617 -5.0290 -2.2423 26 1 2.7263 -6.0105 -1.1642 27 1 4.4161 -4.6017 -0.0949 28 1 5.3181 -3.8722 2.4467 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307098050.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:47 Heat of formation + Delta-G solvation = -47.915926 kcal Electronic energy + Delta-G solvation = -14834.943481 eV Core-core repulsion = 12261.706136 eV Total energy + Delta-G solvation = -2573.237346 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.59661 -38.49955 -36.78769 -35.56448 -33.40851 -31.68452 -31.22476 -27.40872 -25.96910 -23.32276 -22.67398 -20.32519 -19.10893 -17.64513 -17.02965 -16.86769 -15.99481 -15.93713 -15.33209 -14.62218 -14.42808 -14.27337 -13.62315 -13.44451 -13.23585 -13.07953 -12.82833 -12.56565 -12.53160 -12.19192 -11.83106 -11.60031 -11.45455 -11.20554 -10.91108 -10.29091 -9.33586 -9.14291 -8.62297 -6.29902 0.63695 0.95190 1.13544 1.37983 1.45910 1.54114 1.58792 2.19432 2.77845 3.12465 3.70585 3.86590 3.89061 4.38964 4.51073 4.61920 4.73728 4.75403 4.93206 5.09894 5.12533 5.30308 5.37093 5.64124 5.95716 6.04528 6.20455 6.29549 6.44161 6.67165 6.88243 7.01170 8.31054 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.020622 B = 0.013392 C = 0.009909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.415933 B = 2090.328548 C = 2824.992313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.056 4.056 3 H 0.125 0.875 4 Cl -0.140 7.140 5 C 0.445 3.555 6 O -0.497 6.497 7 C -0.305 4.305 8 C -0.059 4.059 9 C -0.250 4.250 10 C -0.093 4.093 11 C -0.194 4.194 12 C 0.136 3.864 13 C -0.449 4.449 14 H 0.061 0.939 15 C 0.056 3.944 16 N -0.800 5.800 17 Si 0.954 3.046 18 H -0.259 1.259 19 H -0.264 1.264 20 H -0.263 1.263 21 H 0.067 0.933 22 H 0.099 0.901 23 H 0.086 0.914 24 H 0.112 0.888 25 H 0.118 0.882 26 H 0.110 0.890 27 H 0.109 0.891 28 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.566 3.666 1.567 6.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.100 4.100 3 H 0.143 0.857 4 Cl -0.113 7.113 5 C 0.324 3.676 6 O -0.374 6.374 7 C -0.308 4.308 8 C -0.077 4.077 9 C -0.269 4.269 10 C -0.111 4.111 11 C -0.213 4.213 12 C 0.133 3.867 13 C -0.477 4.477 14 H 0.080 0.920 15 C -0.162 4.162 16 N -0.425 5.425 17 Si 0.776 3.224 18 H -0.184 1.184 19 H -0.188 1.188 20 H -0.187 1.187 21 H 0.086 0.914 22 H 0.118 0.882 23 H 0.105 0.895 24 H 0.130 0.870 25 H 0.136 0.864 26 H 0.128 0.872 27 H 0.127 0.873 28 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.338 3.765 1.365 5.904 hybrid contribution 0.797 0.130 0.459 0.929 sum -3.541 3.894 1.824 5.571 Atomic orbital electron populations 1.21981 0.88391 1.04314 1.05066 1.24634 1.00330 0.98728 0.86333 0.85695 1.98786 1.89661 1.80971 1.41896 1.22483 0.68950 0.89373 0.86779 1.90459 1.40970 1.70103 1.35879 1.21047 1.00340 0.92829 1.16535 1.20713 0.96763 0.93585 0.96615 1.20460 1.01385 0.94361 1.10731 1.20986 0.94598 0.98709 0.96809 1.21317 1.00859 0.93946 1.05202 1.18535 0.88882 0.92283 0.86984 1.19366 1.16199 0.99392 1.12778 0.92039 1.26411 0.99104 0.95395 0.95312 1.69694 1.36003 1.19060 1.17725 0.85644 0.78384 0.79715 0.78694 1.18365 1.18834 1.18709 0.91354 0.88197 0.89543 0.86995 0.86394 0.87216 0.87288 0.89934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.73 9.30 71.98 0.67 -3.06 15 2 C -0.06 -1.94 3.76 29.85 0.11 -1.83 15 3 H 0.13 3.91 8.14 -2.39 -0.02 3.90 15 4 Cl -0.14 -5.62 24.52 -2.72 -0.07 -5.68 15 5 C 0.44 19.27 4.83 27.87 0.13 19.40 15 6 O -0.50 -23.32 17.86 -3.21 -0.06 -23.38 15 7 C -0.31 -14.43 5.08 -18.56 -0.09 -14.52 15 8 C -0.06 -2.53 9.80 22.57 0.22 -2.31 15 9 C -0.25 -10.54 9.98 22.33 0.22 -10.32 15 10 C -0.09 -4.16 9.97 22.21 0.22 -3.93 15 11 C -0.19 -9.79 8.67 22.73 0.20 -9.60 15 12 C 0.14 6.98 5.05 -19.85 -0.10 6.88 15 13 C -0.45 -22.73 6.02 23.40 0.14 -22.59 15 14 H 0.06 3.17 7.44 -2.91 -0.02 3.15 15 15 C 0.06 2.66 5.26 85.41 0.45 3.11 15 16 N -0.80 -38.90 10.85 21.90 0.24 -38.66 15 17 Si 0.95 37.04 29.58 68.60 2.03 39.07 15 18 H -0.26 -9.93 7.11 99.48 0.71 -9.22 15 19 H -0.26 -9.65 7.11 99.48 0.71 -8.94 15 20 H -0.26 -10.15 7.11 99.48 0.71 -9.44 15 21 H 0.07 1.92 8.14 -2.39 -0.02 1.90 15 22 H 0.10 2.13 8.14 -2.39 -0.02 2.11 15 23 H 0.09 2.01 8.14 -2.39 -0.02 1.99 15 24 H 0.11 4.20 8.06 -2.91 -0.02 4.18 15 25 H 0.12 4.20 8.06 -2.91 -0.02 4.18 15 26 H 0.11 4.30 8.06 -2.91 -0.02 4.28 15 27 H 0.11 5.70 6.24 -2.91 -0.02 5.68 15 28 H 0.29 12.88 8.29 -92.70 -0.77 12.11 15 Total: -1.00 -57.04 260.56 5.48 -51.56 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 1.16 Total: 15.87 kcal Atomic # 6 Polarization: -40.95 SS G_CDS: 2.17 Total: -38.78 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.24 Total: -38.66 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.06 Total: -23.38 kcal Atomic # 14 Polarization: 37.04 SS G_CDS: 2.03 Total: 39.07 kcal Atomic # 17 Polarization: -5.62 SS G_CDS: -0.07 Total: -5.68 kcal Total: -57.04 5.48 -51.56 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307098050.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.647 kcal (2) G-P(sol) polarization free energy of solvation -57.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds