Wall clock time and date at job start Mon Mar 30 2020 05:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08995 * 109.47433 * 2 1 4 4 Cl 1.80303 * 109.47052 * 240.00342 * 2 1 3 5 5 C 1.50706 * 109.47529 * 120.00348 * 2 1 3 6 6 O 1.21339 * 120.00217 * 94.99351 * 5 2 1 7 7 C 1.46597 * 119.99575 * 275.00526 * 5 2 1 8 8 C 1.39689 * 120.59271 * 354.46206 * 7 5 2 9 9 C 1.38013 * 120.01895 * 180.02562 * 8 7 5 10 10 C 1.38724 * 121.31075 * 0.02562 * 9 8 7 11 11 C 1.37506 * 121.22839 * 359.97053 * 10 9 8 12 12 C 1.40829 * 119.85951 * 0.28201 * 11 10 9 13 13 C 1.40722 * 120.61926 * 179.72524 * 12 11 10 14 14 H 1.07998 * 120.00324 * 147.72734 * 13 12 11 15 15 C 1.40400 * 119.99691 * 327.72468 * 13 12 11 16 16 N 1.30566 * 120.00055 * 350.31994 * 15 13 12 17 17 Si 1.86794 * 119.99851 * 170.32567 * 15 13 12 18 18 H 1.48504 * 109.47558 * 89.99879 * 17 15 13 19 19 H 1.48499 * 109.47223 * 209.99922 * 17 15 13 20 20 H 1.48500 * 109.46983 * 329.99756 * 17 15 13 21 21 H 1.09007 * 109.47132 * 299.99569 * 1 2 3 22 22 H 1.08993 * 109.47731 * 59.99972 * 1 2 3 23 23 H 1.09005 * 109.47321 * 179.97438 * 1 2 3 24 24 H 1.07999 * 119.98767 * 359.97438 * 8 7 5 25 25 H 1.07999 * 119.34570 * 180.02562 * 9 8 7 26 26 H 1.07999 * 119.38670 * 179.97438 * 10 9 8 27 27 H 1.07997 * 120.06607 * 179.97438 * 11 10 9 28 28 H 0.96997 * 119.99750 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 17 2.1309 -0.8499 -1.4722 5 6 2.0324 -0.7105 1.2304 6 8 2.3209 -1.8878 1.1759 7 6 2.1723 0.0208 2.4932 8 6 1.9543 1.3997 2.5442 9 6 2.0898 2.0764 3.7393 10 6 2.4420 1.4147 4.9066 11 6 2.6687 0.0585 4.9166 12 6 2.5498 -0.6811 3.7241 13 6 2.7839 -2.0687 3.7149 14 1 2.2357 -2.7043 3.0353 15 6 3.7302 -2.6267 4.5892 16 7 4.5251 -1.8491 5.2734 17 14 3.8519 -4.4816 4.7733 18 1 4.8205 -5.0150 3.7820 19 1 4.3141 -4.8136 6.1449 20 1 2.5180 -5.0908 4.5394 21 1 -0.3634 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 1.6805 1.9363 1.6479 25 1 1.9183 3.1424 3.7664 26 1 2.5397 1.9751 5.8246 27 1 2.9424 -0.4376 5.8361 28 1 5.1786 -2.2347 5.8777 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307098052.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:49 Heat of formation + Delta-G solvation = -52.416100 kcal Electronic energy + Delta-G solvation = -14514.791536 eV Core-core repulsion = 11941.359048 eV Total energy + Delta-G solvation = -2573.432488 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.37917 -38.38396 -36.88694 -35.74280 -33.69389 -31.65210 -31.13521 -27.58755 -25.68364 -23.52434 -22.56533 -20.18995 -19.38530 -17.52670 -17.10468 -16.50437 -15.96244 -15.71866 -15.43908 -14.74982 -14.52090 -14.08499 -13.78441 -13.39041 -13.15569 -12.90550 -12.84271 -12.57457 -12.54717 -12.26992 -11.91374 -11.75557 -11.49682 -11.31785 -11.22019 -10.03315 -9.43116 -9.24411 -8.79374 -6.46968 0.22542 0.99602 1.17252 1.31879 1.44693 1.49777 1.97563 2.14550 2.68640 3.21134 3.61581 3.96952 3.98392 4.39327 4.50074 4.63620 4.73282 4.77937 5.02022 5.09276 5.14941 5.19377 5.23885 5.60661 5.83785 6.00273 6.11924 6.26755 6.60355 6.74978 6.90226 7.10419 8.15201 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.021163 B = 0.009984 C = 0.007216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.721544 B = 2803.796686 C = 3879.406487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.037 4.037 3 H 0.140 0.860 4 Cl -0.181 7.181 5 C 0.379 3.621 6 O -0.492 6.492 7 C -0.318 4.318 8 C -0.038 4.038 9 C -0.247 4.247 10 C -0.083 4.083 11 C -0.189 4.189 12 C 0.114 3.886 13 C -0.446 4.446 14 H 0.086 0.914 15 C 0.032 3.968 16 N -0.806 5.806 17 Si 0.981 3.019 18 H -0.268 1.268 19 H -0.254 1.254 20 H -0.261 1.261 21 H 0.089 0.911 22 H 0.102 0.898 23 H 0.056 0.944 24 H 0.139 0.861 25 H 0.130 0.870 26 H 0.117 0.883 27 H 0.102 0.898 28 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.071 4.925 -4.421 8.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.081 4.081 3 H 0.158 0.842 4 Cl -0.154 7.154 5 C 0.263 3.737 6 O -0.373 6.373 7 C -0.321 4.321 8 C -0.056 4.056 9 C -0.266 4.266 10 C -0.101 4.101 11 C -0.208 4.208 12 C 0.110 3.890 13 C -0.473 4.473 14 H 0.103 0.897 15 C -0.185 4.185 16 N -0.431 5.431 17 Si 0.801 3.199 18 H -0.193 1.193 19 H -0.177 1.177 20 H -0.184 1.184 21 H 0.108 0.892 22 H 0.121 0.879 23 H 0.075 0.925 24 H 0.157 0.843 25 H 0.148 0.852 26 H 0.135 0.865 27 H 0.120 0.880 28 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.685 4.267 -4.396 7.712 hybrid contribution 0.478 -0.831 0.238 0.988 sum -4.207 3.436 -4.157 6.840 Atomic orbital electron populations 1.21987 0.88833 1.03727 1.05293 1.24726 0.99936 0.99469 0.84003 0.84198 1.98699 1.90531 1.82543 1.43676 1.22242 0.74735 0.87965 0.88773 1.90469 1.41288 1.18842 1.86691 1.21163 1.22904 0.94825 0.93196 1.21236 0.94480 0.91844 0.98074 1.20704 1.13078 0.99838 0.93006 1.21128 0.96605 0.93964 0.98425 1.21315 1.07370 0.94564 0.97532 1.19033 0.86423 0.93109 0.90428 1.20248 1.17432 0.93833 1.15834 0.89657 1.26929 0.93617 1.05625 0.92348 1.69703 1.14240 1.39834 1.19279 0.85219 0.79775 0.75974 0.78917 1.19326 1.17746 1.18443 0.89201 0.87924 0.92517 0.84320 0.85184 0.86540 0.88033 0.89434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.58 9.30 71.98 0.67 -2.91 15 2 C -0.04 -1.18 3.17 29.85 0.09 -1.09 15 3 H 0.14 3.68 6.56 -2.39 -0.02 3.66 15 4 Cl -0.18 -6.08 28.00 -2.72 -0.08 -6.16 15 5 C 0.38 16.64 6.24 27.87 0.17 16.82 15 6 O -0.49 -25.54 13.68 -3.21 -0.04 -25.58 15 7 C -0.32 -14.75 6.06 -18.55 -0.11 -14.86 15 8 C -0.04 -1.45 9.39 22.57 0.21 -1.23 15 9 C -0.25 -9.26 9.98 22.33 0.22 -9.04 15 10 C -0.08 -3.48 9.97 22.21 0.22 -3.26 15 11 C -0.19 -9.45 8.65 22.73 0.20 -9.26 15 12 C 0.11 6.07 5.67 -19.85 -0.11 5.96 15 13 C -0.45 -24.79 7.88 23.40 0.18 -24.60 15 14 H 0.09 4.94 5.94 -2.91 -0.02 4.92 15 15 C 0.03 1.66 5.26 85.41 0.45 2.11 15 16 N -0.81 -41.51 11.05 21.90 0.24 -41.27 15 17 Si 0.98 39.93 29.57 68.60 2.03 41.96 15 18 H -0.27 -10.95 7.11 99.48 0.71 -10.24 15 19 H -0.25 -9.33 7.11 99.48 0.71 -8.62 15 20 H -0.26 -10.60 7.11 99.48 0.71 -9.90 15 21 H 0.09 2.13 8.14 -2.38 -0.02 2.11 15 22 H 0.10 1.93 8.14 -2.39 -0.02 1.91 15 23 H 0.06 1.59 8.14 -2.38 -0.02 1.57 15 24 H 0.14 3.93 6.39 -2.91 -0.02 3.91 15 25 H 0.13 3.88 8.06 -2.91 -0.02 3.86 15 26 H 0.12 4.19 8.06 -2.91 -0.02 4.17 15 27 H 0.10 5.32 6.49 -2.91 -0.02 5.30 15 28 H 0.29 13.58 8.29 -92.71 -0.77 12.81 15 Total: -1.00 -62.49 259.40 5.53 -56.97 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 1.18 Total: 15.46 kcal Atomic # 6 Polarization: -43.57 SS G_CDS: 2.20 Total: -41.37 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: 0.24 Total: -41.27 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -0.04 Total: -25.58 kcal Atomic # 14 Polarization: 39.93 SS G_CDS: 2.03 Total: 41.96 kcal Atomic # 17 Polarization: -6.08 SS G_CDS: -0.08 Total: -6.16 kcal Total: -62.49 5.53 -56.97 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307098052.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.551 kcal (2) G-P(sol) polarization free energy of solvation -62.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds