Wall clock time and date at job start Mon Mar 30 2020 05:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30964 * 1 3 3 Si 1.86798 * 119.99885 * 2 1 4 4 H 1.48508 * 109.46921 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47218 * 299.99719 * 3 2 1 6 6 H 1.48505 * 109.47179 * 60.00326 * 3 2 1 7 7 C 1.39844 * 119.99875 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00019 * 201.12442 * 7 2 1 9 9 C 1.40773 * 119.99650 * 21.12302 * 7 2 1 10 10 C 1.42123 * 120.14071 * 38.73847 * 9 7 2 11 11 S 1.75914 * 130.40986 * 359.97438 * 10 9 7 12 12 C 1.75297 * 92.18947 * 180.02562 * 11 10 9 13 13 F 1.35100 * 124.35932 * 179.97438 * 12 11 10 14 14 C 1.32184 * 111.26761 * 359.97438 * 12 11 10 15 15 C 1.39231 * 119.75169 * 179.97438 * 10 9 7 16 16 C 1.41596 * 119.11089 * 359.97438 * 15 10 9 17 17 C 1.37410 * 121.03296 * 359.97438 * 16 15 10 18 18 C 1.38643 * 120.67131 * 0.29786 * 17 16 15 19 19 O 1.35654 * 120.14946 * 179.72192 * 18 17 16 20 20 H 0.97004 * 119.99550 * 0.02562 * 1 2 3 21 21 H 1.08005 * 122.58450 * 179.97438 * 14 12 11 22 22 H 1.08006 * 119.48103 * 179.97438 * 16 15 10 23 23 H 1.08005 * 119.66796 * 180.02562 * 17 16 15 24 24 H 0.96709 * 113.99959 * 91.12537 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3096 0.0000 0.0000 3 14 2.2436 1.6177 0.0000 4 1 3.7037 1.3463 0.0006 5 1 1.8849 2.3964 -1.2125 6 1 1.8849 2.3964 1.2126 7 6 2.0088 -1.2111 -0.0005 8 1 3.0344 -1.2427 0.3365 9 6 1.3758 -2.3890 -0.4404 10 6 0.4926 -2.3517 -1.5533 11 16 -0.0033 -1.0051 -2.5709 12 6 -1.0320 -2.0348 -3.5479 13 9 -1.7694 -1.6032 -4.5944 14 6 -0.9930 -3.2878 -3.1286 15 6 -0.1287 -3.5216 -1.9818 16 6 0.1342 -4.7322 -1.2961 17 6 0.9893 -4.7661 -0.2210 18 6 1.6127 -3.6102 0.2235 19 8 2.4506 -3.6548 1.2894 20 1 -0.4850 0.8401 -0.0004 21 1 -1.5597 -4.0769 -3.6005 22 1 -0.3449 -5.6433 -1.6232 23 1 1.1744 -5.7018 0.2857 24 1 3.3763 -3.8093 1.0559 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307103652.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:31 Heat of formation + Delta-G solvation = -70.957442 kcal Electronic energy + Delta-G solvation = -14280.784958 eV Core-core repulsion = 11585.131859 eV Total energy + Delta-G solvation = -2695.653099 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.94882 -40.19629 -37.84980 -35.96402 -34.31784 -31.77579 -28.87268 -27.23566 -24.23041 -23.04319 -21.62866 -19.88781 -18.90064 -18.21747 -17.38660 -16.81013 -16.70113 -16.34181 -15.96028 -15.32642 -15.00413 -14.40002 -14.10143 -13.74458 -13.45051 -13.18794 -12.85455 -12.58926 -12.34887 -11.95331 -11.64317 -11.41827 -11.04818 -10.64181 -10.17317 -8.97405 -8.87826 -8.19290 -6.44728 -0.07314 0.49873 0.77100 1.26778 1.36675 1.44954 1.49526 1.54243 2.17262 2.63361 3.27035 3.35117 3.86069 4.30759 4.40967 4.61758 4.69484 4.93029 5.08606 5.29267 5.31356 5.56663 5.69961 5.88303 6.13327 6.33570 6.60516 6.78363 7.34168 8.22557 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.019508 B = 0.014650 C = 0.008740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.930895 B = 1910.813643 C = 3202.979631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.036 3.964 3 Si 0.959 3.041 4 H -0.254 1.254 5 H -0.261 1.261 6 H -0.266 1.266 7 C -0.487 4.487 8 H 0.085 0.915 9 C 0.096 3.904 10 C -0.182 4.182 11 S 0.120 5.880 12 C -0.038 4.038 13 F -0.115 7.115 14 C -0.155 4.155 15 C -0.067 4.067 16 C -0.175 4.175 17 C -0.105 4.105 18 C -0.012 4.012 19 O -0.496 6.496 20 H 0.293 0.707 21 H 0.169 0.831 22 H 0.139 0.861 23 H 0.138 0.862 24 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.183 -2.596 -3.821 4.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.181 4.181 3 Si 0.779 3.221 4 H -0.177 1.177 5 H -0.186 1.186 6 H -0.191 1.191 7 C -0.516 4.516 8 H 0.103 0.897 9 C 0.090 3.910 10 C -0.299 4.299 11 S 0.383 5.617 12 C -0.171 4.171 13 F -0.094 7.094 14 C -0.189 4.189 15 C -0.074 4.074 16 C -0.196 4.196 17 C -0.125 4.125 18 C -0.061 4.061 19 O -0.305 6.305 20 H 0.104 0.896 21 H 0.186 0.814 22 H 0.157 0.843 23 H 0.155 0.845 24 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 0.712 -0.757 -3.634 3.780 hybrid contribution 0.106 -0.624 -0.247 0.679 sum 0.818 -1.381 -3.881 4.199 Atomic orbital electron populations 1.69879 1.08735 1.31205 1.32824 1.26536 0.95262 1.03908 0.92383 0.85458 0.80139 0.77224 0.79242 1.17718 1.18573 1.19084 1.19419 1.00066 0.92227 1.39927 0.89750 1.17503 0.90680 0.94193 0.88613 1.22501 1.09832 0.94561 1.02957 1.84139 1.45075 1.10109 1.22418 1.22207 1.03250 0.98166 0.93508 1.91421 1.74507 1.89860 1.53593 1.21222 1.02996 0.96013 0.98628 1.18958 0.97945 0.94397 0.96121 1.20474 1.04605 0.95641 0.98892 1.21005 0.98145 0.97209 0.96165 1.18654 1.02290 0.92748 0.92408 1.84711 1.20999 1.94699 1.30110 0.89602 0.81383 0.84296 0.84472 0.76562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.81 10.68 21.82 0.23 -40.58 14 2 C 0.04 1.74 4.25 85.21 0.36 2.11 14 3 Si 0.96 37.53 29.61 68.60 2.03 39.56 14 4 H -0.25 -9.65 7.11 99.48 0.71 -8.95 14 5 H -0.26 -9.89 7.11 99.48 0.71 -9.19 14 6 H -0.27 -10.07 7.11 99.48 0.71 -9.37 14 7 C -0.49 -25.12 8.43 23.28 0.20 -24.92 14 8 H 0.08 4.21 7.91 -2.91 -0.02 4.19 14 9 C 0.10 4.96 5.38 -21.02 -0.11 4.84 14 10 C -0.18 -9.00 5.73 23.47 0.13 -8.87 14 11 S 0.12 5.50 19.84 -56.49 -1.12 4.38 14 12 C -0.04 -1.55 8.20 66.81 0.55 -1.00 14 13 F -0.11 -4.36 17.32 44.97 0.78 -3.58 14 14 C -0.16 -6.08 10.41 23.13 0.24 -5.84 14 15 C -0.07 -2.97 6.03 -20.34 -0.12 -3.09 14 16 C -0.17 -6.90 10.08 22.90 0.23 -6.67 14 17 C -0.11 -4.25 9.91 22.17 0.22 -4.03 14 18 C -0.01 -0.56 6.73 23.05 0.16 -0.41 14 19 O -0.50 -21.04 12.92 -89.70 -1.16 -22.20 14 20 H 0.29 13.68 8.30 -92.71 -0.77 12.91 14 21 H 0.17 5.29 8.06 -2.91 -0.02 5.27 14 22 H 0.14 4.40 8.06 -2.91 -0.02 4.38 14 23 H 0.14 4.56 8.06 -2.91 -0.02 4.54 14 24 H 0.38 12.20 9.06 -74.05 -0.67 11.53 14 Total: -1.00 -58.18 236.30 3.20 -54.98 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 0.59 Total: 15.32 kcal Atomic # 6 Polarization: -49.73 SS G_CDS: 1.85 Total: -47.88 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 0.23 Total: -40.58 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -1.16 Total: -22.20 kcal Atomic # 9 Polarization: -4.36 SS G_CDS: 0.78 Total: -3.58 kcal Atomic # 14 Polarization: 37.53 SS G_CDS: 2.03 Total: 39.56 kcal Atomic # 16 Polarization: 5.50 SS G_CDS: -1.12 Total: 4.38 kcal Total: -58.18 3.20 -54.98 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307103652.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.975 kcal (2) G-P(sol) polarization free energy of solvation -58.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds