Wall clock time and date at job start Mon Mar 30 2020 05:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20758 * 119.99878 * 2 1 4 4 C 1.50699 * 119.99990 * 180.02562 * 2 1 3 5 5 C 1.50703 * 109.47059 * 179.97438 * 4 2 1 6 6 C 1.38635 * 119.87233 * 89.99376 * 5 4 2 7 7 C 1.38728 * 120.48820 * 179.97438 * 6 5 4 8 8 Cl 1.73598 * 119.88938 * 180.02562 * 7 6 5 9 9 C 1.37757 * 120.22131 * 0.02562 * 7 6 5 10 10 C 1.40669 * 119.73363 * 359.97438 * 9 7 6 11 11 C 1.41396 * 120.23870 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00432 * 204.34972 * 11 10 9 13 13 C 1.39950 * 119.99966 * 24.35095 * 11 10 9 14 14 N 1.30819 * 119.99516 * 17.82036 * 13 11 10 15 15 Si 1.86794 * 120.00111 * 197.82007 * 13 11 10 16 16 H 1.48500 * 109.47346 * 59.99882 * 15 13 11 17 17 H 1.48493 * 109.47424 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47082 * 300.00211 * 15 13 11 19 19 C 1.37602 * 119.86444 * 270.01543 * 5 4 2 20 20 H 1.09001 * 109.46774 * 239.99950 * 1 2 3 21 21 H 1.08996 * 109.47078 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47188 * 120.00236 * 1 2 3 23 23 H 1.08997 * 109.47681 * 59.99775 * 4 2 1 24 24 H 1.09006 * 109.46958 * 299.99147 * 4 2 1 25 25 H 1.08002 * 119.75280 * 0.02562 * 6 5 4 26 26 H 1.08002 * 120.13507 * 179.72270 * 9 7 6 27 27 H 0.97005 * 119.99434 * 179.97438 * 14 13 11 28 28 H 1.07999 * 120.11655 * 359.97438 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 6 3.7422 -1.0297 -0.0011 6 6 4.4215 -0.9037 1.2008 7 6 5.7854 -0.6507 1.2153 8 17 6.6207 -0.4964 2.7293 9 6 6.4792 -0.5215 0.0322 10 6 5.7992 -0.6477 -1.1927 11 6 6.5007 -0.5165 -2.4134 12 1 5.9749 -0.2219 -3.3095 13 6 7.8766 -0.7686 -2.4604 14 7 8.4503 -1.4471 -1.5003 15 14 8.8936 -0.1361 -3.8938 16 1 8.7979 1.3446 -3.9535 17 1 10.3123 -0.5327 -3.7074 18 1 8.3790 -0.7167 -5.1601 19 6 4.4153 -0.9039 -1.1946 20 1 -0.3633 -0.5139 0.8900 21 1 -0.3633 1.0276 0.0005 22 1 -0.3633 -0.5139 -0.8900 23 1 1.9972 -1.8763 -0.8907 24 1 1.9973 -1.8770 0.8893 25 1 3.8850 -1.0040 2.1328 26 1 7.5402 -0.3201 0.0451 27 1 9.4039 -1.6222 -1.5330 28 1 3.8837 -1.0026 -2.1296 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307118166.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:19 Heat of formation + Delta-G solvation = -59.878801 kcal Electronic energy + Delta-G solvation = -14141.794698 eV Core-core repulsion = 11568.038603 eV Total energy + Delta-G solvation = -2573.756095 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.60020 -39.22672 -37.16454 -35.76704 -33.27463 -31.64724 -31.03888 -27.71385 -27.24668 -22.72715 -22.49297 -20.50082 -18.93394 -17.41592 -16.68215 -16.57936 -16.32679 -16.12153 -15.44506 -15.36630 -14.56368 -14.02399 -13.62314 -13.29725 -13.14716 -13.05824 -12.91397 -12.72040 -12.70228 -12.26744 -12.05925 -11.82910 -11.66868 -11.40004 -11.03976 -10.52964 -9.38764 -9.16177 -8.68396 -6.42195 0.81431 0.92297 1.18698 1.36867 1.47490 1.50028 1.51394 2.18193 2.61533 3.35297 3.67936 3.99223 4.37806 4.42055 4.56732 4.77197 4.79821 4.82581 4.85474 5.01359 5.14197 5.29465 5.33204 5.46722 5.80545 5.93584 6.01347 6.21548 6.52706 6.77174 6.85503 6.89183 8.27690 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.021063 B = 0.008303 C = 0.006311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.021613 B = 3371.437715 C = 4435.672730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.351 3.649 3 O -0.505 6.505 4 C -0.127 4.127 5 C -0.041 4.041 6 C -0.230 4.230 7 C -0.013 4.013 8 Cl -0.105 7.105 9 C -0.187 4.187 10 C 0.088 3.912 11 C -0.495 4.495 12 H 0.081 0.919 13 C 0.036 3.964 14 N -0.819 5.819 15 Si 0.983 3.017 16 H -0.264 1.264 17 H -0.267 1.267 18 H -0.255 1.255 19 C -0.227 4.227 20 H 0.119 0.881 21 H 0.073 0.927 22 H 0.117 0.883 23 H 0.125 0.875 24 H 0.130 0.870 25 H 0.119 0.881 26 H 0.109 0.891 27 H 0.290 0.710 28 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.173 -1.592 1.460 10.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.230 3.770 3 O -0.382 6.382 4 C -0.164 4.164 5 C -0.041 4.041 6 C -0.250 4.250 7 C -0.039 4.039 8 Cl -0.077 7.077 9 C -0.207 4.207 10 C 0.086 3.914 11 C -0.524 4.524 12 H 0.099 0.901 13 C -0.180 4.180 14 N -0.444 5.444 15 Si 0.803 3.197 16 H -0.188 1.188 17 H -0.191 1.191 18 H -0.179 1.179 19 C -0.247 4.247 20 H 0.137 0.863 21 H 0.092 0.908 22 H 0.135 0.865 23 H 0.143 0.857 24 H 0.148 0.852 25 H 0.137 0.863 26 H 0.126 0.874 27 H 0.101 0.899 28 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -9.563 -1.148 1.677 9.777 hybrid contribution 1.024 0.204 -0.297 1.085 sum -8.539 -0.944 1.380 8.701 Atomic orbital electron populations 1.22303 0.90400 1.05219 1.06851 1.25282 0.93685 0.89389 0.68672 1.90452 1.73571 1.36722 1.37440 1.21260 0.89922 0.98128 1.07046 1.19321 0.95265 0.97553 0.91970 1.20357 0.91806 1.15102 0.97747 1.20873 0.93096 1.04796 0.85120 1.98240 1.79415 1.96717 1.33302 1.21141 1.00007 1.08866 0.90713 1.17840 0.92306 0.88323 0.92969 1.19797 0.94061 1.42686 0.95813 0.90136 1.26793 0.99052 0.91970 1.00158 1.69864 1.13490 1.27557 1.33527 0.85244 0.76931 0.79562 0.77981 1.18805 1.19106 1.17856 1.21111 0.94860 1.11943 0.96774 0.86274 0.90762 0.86501 0.85661 0.85217 0.86282 0.87353 0.89922 0.87762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.09 10.26 71.24 0.73 -2.36 15 2 C 0.35 10.05 7.26 29.10 0.21 10.26 15 3 O -0.51 -20.64 16.76 -1.44 -0.02 -20.67 15 4 C -0.13 -3.58 5.76 29.10 0.17 -3.41 15 5 C -0.04 -1.72 4.37 -19.92 -0.09 -1.81 15 6 C -0.23 -10.28 9.49 22.48 0.21 -10.06 15 7 C -0.01 -0.62 6.31 22.27 0.14 -0.48 15 8 Cl -0.11 -4.49 28.95 -2.72 -0.08 -4.57 15 9 C -0.19 -10.29 8.47 22.75 0.19 -10.10 15 10 C 0.09 4.88 5.58 -21.29 -0.12 4.76 15 11 C -0.49 -26.94 9.05 23.46 0.21 -26.73 15 12 H 0.08 4.19 7.91 -2.91 -0.02 4.17 15 13 C 0.04 1.84 5.14 85.26 0.44 2.28 15 14 N -0.82 -43.42 10.95 21.83 0.24 -43.19 15 15 Si 0.98 38.52 29.59 68.60 2.03 40.55 15 16 H -0.26 -10.28 7.11 99.48 0.71 -9.58 15 17 H -0.27 -9.88 7.11 99.48 0.71 -9.18 15 18 H -0.25 -9.49 7.11 99.48 0.71 -8.78 15 19 C -0.23 -11.09 9.44 22.73 0.21 -10.88 15 20 H 0.12 1.25 8.14 -2.39 -0.02 1.23 15 21 H 0.07 1.30 8.12 -2.39 -0.02 1.28 15 22 H 0.12 1.30 8.14 -2.39 -0.02 1.28 15 23 H 0.13 2.89 8.08 -2.39 -0.02 2.87 15 24 H 0.13 2.80 8.08 -2.38 -0.02 2.78 15 25 H 0.12 4.65 8.06 -2.91 -0.02 4.63 15 26 H 0.11 6.28 6.16 -2.91 -0.02 6.26 15 27 H 0.29 13.94 8.30 -92.70 -0.77 13.17 15 28 H 0.10 4.72 8.06 -2.91 -0.02 4.70 15 Total: -1.00 -67.21 267.72 5.65 -61.56 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 1.17 Total: 14.83 kcal Atomic # 6 Polarization: -50.84 SS G_CDS: 2.32 Total: -48.53 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: 0.24 Total: -43.19 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.02 Total: -20.67 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 2.03 Total: 40.55 kcal Atomic # 17 Polarization: -4.49 SS G_CDS: -0.08 Total: -4.57 kcal Total: -67.21 5.65 -61.56 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307118166.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.682 kcal (2) G-P(sol) polarization free energy of solvation -67.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds