Wall clock time and date at job start Mon Mar 30 2020 05:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.20755 * 120.00525 * 2 1 4 4 C 1.50705 * 119.99791 * 180.02562 * 2 1 3 5 5 H 1.08998 * 109.47068 * 35.00117 * 4 2 1 6 6 Cl 1.80298 * 109.46870 * 155.00122 * 4 2 1 7 7 C 1.50698 * 109.47006 * 274.99816 * 4 2 1 8 8 C 1.37638 * 120.12629 * 99.45510 * 7 4 2 9 9 C 1.38619 * 120.24995 * 179.73963 * 8 7 4 10 10 C 1.38660 * 120.49945 * 0.51773 * 9 8 7 11 11 C 1.37599 * 120.24595 * 359.76123 * 10 9 8 12 12 C 1.40696 * 120.12904 * 279.72706 * 7 4 2 13 13 C 1.41394 * 120.24842 * 0.02788 * 12 7 4 14 14 H 1.07997 * 119.99441 * 37.45237 * 13 12 7 15 15 C 1.39945 * 120.00242 * 217.45826 * 13 12 7 16 16 N 1.30824 * 120.00148 * 206.61567 * 15 13 12 17 17 Si 1.86800 * 120.00001 * 26.62290 * 15 13 12 18 18 H 1.48494 * 109.47609 * 95.95024 * 17 15 13 19 19 H 1.48502 * 109.47135 * 215.95346 * 17 15 13 20 20 H 1.48505 * 109.46926 * 335.95080 * 17 15 13 21 21 H 1.08996 * 109.46979 * 269.99809 * 1 2 3 22 22 H 1.08996 * 109.46711 * 29.99684 * 1 2 3 23 23 H 1.08999 * 109.47028 * 150.00141 * 1 2 3 24 24 H 1.07995 * 119.87903 * 359.97438 * 8 7 4 25 25 H 1.07996 * 119.75264 * 180.25536 * 9 8 7 26 26 H 1.07996 * 119.87768 * 179.74599 * 10 9 8 27 27 H 1.08005 * 120.12621 * 180.02562 * 11 10 9 28 28 H 0.96996 * 119.99738 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0457 0.0000 4 6 2.2605 -1.3052 -0.0006 5 1 1.7131 -2.0404 -0.5904 6 17 3.8952 -1.0550 -0.7188 7 6 2.4044 -1.8027 1.4146 8 6 1.5544 -2.7724 1.8958 9 6 1.6879 -3.2358 3.1954 10 6 2.6701 -2.7219 4.0283 11 6 3.5273 -1.7479 3.5703 12 6 3.4045 -1.2737 2.2509 13 6 4.2795 -0.2727 1.7696 14 1 3.9092 0.4944 1.1057 15 6 5.6253 -0.2760 2.1535 16 7 6.3023 0.8432 2.1742 17 14 6.4549 -1.8785 2.6360 18 1 7.1761 -2.4353 1.4634 19 1 7.4199 -1.6248 3.7359 20 1 5.4283 -2.8496 3.0924 21 1 -0.3633 0.0000 1.0276 22 1 -0.3632 0.8900 -0.5138 23 1 -0.3633 -0.8900 -0.5138 24 1 0.7828 -3.1766 1.2572 25 1 1.0192 -3.9998 3.5633 26 1 2.7625 -3.0873 5.0404 27 1 4.2920 -1.3492 4.2206 28 1 7.2350 0.8409 2.4407 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307119994.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:57 Heat of formation + Delta-G solvation = -24.470080 kcal Electronic energy + Delta-G solvation = -14919.065421 eV Core-core repulsion = 12346.844764 eV Total energy + Delta-G solvation = -2572.220657 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.08319 -37.58851 -34.87239 -33.54968 -31.88342 -30.40224 -29.52993 -26.52403 -24.73279 -21.36418 -20.52248 -18.84948 -17.40348 -15.85875 -15.37174 -15.01602 -14.88935 -14.13672 -13.83083 -13.56678 -12.76428 -12.40309 -12.25576 -11.97913 -11.86704 -11.64879 -11.47161 -10.97435 -10.93762 -10.26205 -10.07736 -9.96388 -9.71826 -9.20158 -8.95530 -8.92678 -7.62500 -7.35087 -6.85458 -4.28514 2.21298 2.60984 2.71984 3.12571 3.19594 3.26086 3.36236 4.07672 4.45249 4.68199 5.31345 5.38282 5.48511 5.60882 5.74049 5.81001 5.94906 6.14140 6.21700 6.42624 6.69408 6.92060 7.18856 7.34872 7.55384 7.70620 7.92591 8.00430 8.13127 8.59533 8.68421 8.90734 10.12229 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.021415 B = 0.014299 C = 0.010413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.191892 B = 1957.679606 C = 2688.396344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.349 3.651 3 O -0.426 6.426 4 C 0.020 3.980 5 H 0.103 0.897 6 Cl -0.140 7.140 7 C -0.217 4.217 8 C -0.062 4.062 9 C -0.250 4.250 10 C -0.084 4.084 11 C -0.199 4.199 12 C 0.095 3.905 13 C -0.426 4.426 14 H 0.120 0.880 15 C 0.096 3.904 16 N -0.791 5.791 17 Si 0.866 3.134 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.222 1.222 21 H 0.095 0.905 22 H 0.082 0.918 23 H 0.080 0.920 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.096 0.904 28 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.318 -5.086 -2.485 9.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.222 3.778 3 O -0.297 6.297 4 C -0.025 4.025 5 H 0.121 0.879 6 Cl -0.113 7.113 7 C -0.219 4.219 8 C -0.080 4.080 9 C -0.269 4.269 10 C -0.102 4.102 11 C -0.219 4.219 12 C 0.091 3.909 13 C -0.453 4.453 14 H 0.138 0.862 15 C -0.125 4.125 16 N -0.414 5.414 17 Si 0.689 3.311 18 H -0.198 1.198 19 H -0.205 1.205 20 H -0.144 1.144 21 H 0.114 0.886 22 H 0.101 0.899 23 H 0.099 0.901 24 H 0.112 0.888 25 H 0.111 0.889 26 H 0.110 0.890 27 H 0.114 0.886 28 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.622 -4.288 -2.536 8.287 hybrid contribution 0.602 -0.776 0.261 1.016 sum -6.020 -5.063 -2.276 8.189 Atomic orbital electron populations 1.22192 0.94320 1.03964 1.04696 1.24649 0.91535 0.90193 0.71450 1.90434 1.71353 1.34342 1.33580 1.22917 0.86033 0.97219 0.96285 0.87918 1.98712 1.31094 1.97519 1.83932 1.19029 1.06270 1.04633 0.91958 1.20345 0.96812 0.95573 0.95311 1.20266 1.04233 1.06897 0.95509 1.20662 0.95658 0.96242 0.97648 1.21080 1.02065 1.02863 0.95864 1.17474 0.92399 0.90494 0.90539 1.19937 0.92915 1.08570 1.23840 0.86237 1.26026 0.98161 0.97097 0.91189 1.69805 1.10638 1.27891 1.33060 0.86821 0.79993 0.85283 0.78965 1.19768 1.20539 1.14450 0.88625 0.89926 0.90138 0.88771 0.88908 0.89015 0.88577 0.90693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.57 10.25 36.01 0.37 -2.20 15 2 C 0.35 6.52 6.26 -29.03 -0.18 6.34 15 3 O -0.43 -9.73 15.08 6.00 0.09 -9.64 15 4 C 0.02 0.39 3.08 -29.03 -0.09 0.30 15 5 H 0.10 1.58 7.96 -51.93 -0.41 1.17 15 6 Cl -0.14 -3.07 24.14 -51.86 -1.25 -4.33 15 7 C -0.22 -4.67 4.92 -103.91 -0.51 -5.18 15 8 C -0.06 -1.19 9.65 -39.66 -0.38 -1.57 15 9 C -0.25 -4.90 10.05 -39.29 -0.39 -5.30 15 10 C -0.08 -1.76 10.02 -39.66 -0.40 -2.16 15 11 C -0.20 -4.70 6.73 -38.87 -0.26 -4.96 15 12 C 0.09 2.32 4.72 -106.82 -0.50 1.82 15 13 C -0.43 -11.32 6.33 -37.74 -0.24 -11.56 15 14 H 0.12 3.44 4.72 -52.49 -0.25 3.19 15 15 C 0.10 2.52 5.22 -17.34 -0.09 2.43 15 16 N -0.79 -21.42 13.93 55.55 0.77 -20.65 15 17 Si 0.87 20.09 26.46 -169.99 -4.50 15.59 15 18 H -0.27 -6.33 7.11 56.52 0.40 -5.93 15 19 H -0.28 -6.28 7.11 56.52 0.40 -5.87 15 20 H -0.22 -5.14 5.41 56.52 0.31 -4.84 15 21 H 0.10 1.23 8.14 -51.93 -0.42 0.81 15 22 H 0.08 0.99 8.14 -51.93 -0.42 0.57 15 23 H 0.08 0.82 8.08 -51.93 -0.42 0.40 15 24 H 0.09 1.48 8.04 -52.49 -0.42 1.06 15 25 H 0.09 1.58 8.06 -52.49 -0.42 1.16 15 26 H 0.09 1.69 8.06 -52.49 -0.42 1.27 15 27 H 0.10 2.26 6.47 -52.48 -0.34 1.92 15 28 H 0.28 6.97 8.30 -40.82 -0.34 6.63 15 LS Contribution 252.43 15.07 3.80 3.80 Total: -1.00 -29.19 252.43 -6.53 -35.72 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -2.76 Total: 1.53 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: -2.68 Total: -22.03 kcal Atomic # 7 Polarization: -21.42 SS G_CDS: 0.77 Total: -20.65 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.09 Total: -9.64 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.50 Total: 15.59 kcal Atomic # 17 Polarization: -3.07 SS G_CDS: -1.25 Total: -4.33 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -29.19 -6.53 -35.72 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307119994.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.250 kcal (2) G-P(sol) polarization free energy of solvation -29.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds