Wall clock time and date at job start Mon Mar 30 2020 05:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.20755 * 120.00525 * 2 1 4 4 C 1.50705 * 119.99791 * 180.02562 * 2 1 3 5 5 H 1.08998 * 109.47068 * 35.00117 * 4 2 1 6 6 Cl 1.80298 * 109.46870 * 155.00122 * 4 2 1 7 7 C 1.50698 * 109.47006 * 274.99816 * 4 2 1 8 8 C 1.37638 * 120.12629 * 99.45510 * 7 4 2 9 9 C 1.38619 * 120.24995 * 179.73963 * 8 7 4 10 10 C 1.38660 * 120.49945 * 0.51773 * 9 8 7 11 11 C 1.37599 * 120.24595 * 359.76123 * 10 9 8 12 12 C 1.40696 * 120.12904 * 279.72706 * 7 4 2 13 13 C 1.41394 * 120.24842 * 0.02788 * 12 7 4 14 14 H 1.07997 * 119.99441 * 37.45237 * 13 12 7 15 15 C 1.39945 * 120.00242 * 217.45826 * 13 12 7 16 16 N 1.30824 * 120.00148 * 206.61567 * 15 13 12 17 17 Si 1.86800 * 120.00001 * 26.62290 * 15 13 12 18 18 H 1.48494 * 109.47609 * 95.95024 * 17 15 13 19 19 H 1.48502 * 109.47135 * 215.95346 * 17 15 13 20 20 H 1.48505 * 109.46926 * 335.95080 * 17 15 13 21 21 H 1.08996 * 109.46979 * 269.99809 * 1 2 3 22 22 H 1.08996 * 109.46711 * 29.99684 * 1 2 3 23 23 H 1.08999 * 109.47028 * 150.00141 * 1 2 3 24 24 H 1.07995 * 119.87903 * 359.97438 * 8 7 4 25 25 H 1.07996 * 119.75264 * 180.25536 * 9 8 7 26 26 H 1.07996 * 119.87768 * 179.74599 * 10 9 8 27 27 H 1.08005 * 120.12621 * 180.02562 * 11 10 9 28 28 H 0.96996 * 119.99738 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0457 0.0000 4 6 2.2605 -1.3052 -0.0006 5 1 1.7131 -2.0404 -0.5904 6 17 3.8952 -1.0550 -0.7188 7 6 2.4044 -1.8027 1.4146 8 6 1.5544 -2.7724 1.8958 9 6 1.6879 -3.2358 3.1954 10 6 2.6701 -2.7219 4.0283 11 6 3.5273 -1.7479 3.5703 12 6 3.4045 -1.2737 2.2509 13 6 4.2795 -0.2727 1.7696 14 1 3.9092 0.4944 1.1057 15 6 5.6253 -0.2760 2.1535 16 7 6.3023 0.8432 2.1742 17 14 6.4549 -1.8785 2.6360 18 1 7.1761 -2.4353 1.4634 19 1 7.4199 -1.6248 3.7359 20 1 5.4283 -2.8496 3.0924 21 1 -0.3633 0.0000 1.0276 22 1 -0.3632 0.8900 -0.5138 23 1 -0.3633 -0.8900 -0.5138 24 1 0.7828 -3.1766 1.2572 25 1 1.0192 -3.9998 3.5633 26 1 2.7625 -3.0873 5.0404 27 1 4.2920 -1.3492 4.2206 28 1 7.2350 0.8409 2.4407 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307119994.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:56 Heat of formation + Delta-G solvation = -41.927254 kcal Electronic energy + Delta-G solvation = -14919.822421 eV Core-core repulsion = 12346.844764 eV Total energy + Delta-G solvation = -2572.977657 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.64530 -39.24926 -36.47096 -35.37481 -33.46010 -32.14206 -30.86451 -28.04661 -26.47254 -23.06939 -22.14106 -20.34174 -19.21910 -17.50466 -16.89582 -16.59465 -16.50114 -15.75010 -15.44491 -15.11806 -14.61441 -13.95846 -13.75009 -13.48956 -13.30854 -13.05015 -12.92596 -12.76862 -12.68923 -11.96263 -11.78661 -11.58071 -11.43981 -10.97114 -10.72079 -10.49139 -9.27012 -9.09727 -8.72695 -6.18973 0.61322 0.90873 1.15649 1.29873 1.41170 1.48956 1.69585 2.20541 2.72704 3.18195 3.65050 4.03275 4.12042 4.25058 4.50587 4.54105 4.70728 4.71754 4.87545 5.01507 5.18227 5.20788 5.43817 5.64826 5.88467 6.03534 6.18065 6.39016 6.58110 6.75126 6.87485 7.02252 8.30963 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.021415 B = 0.014299 C = 0.010413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.191892 B = 1957.679606 C = 2688.396344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.345 3.655 3 O -0.480 6.480 4 C 0.013 3.987 5 H 0.152 0.848 6 Cl -0.172 7.172 7 C -0.214 4.214 8 C -0.060 4.060 9 C -0.228 4.228 10 C -0.090 4.090 11 C -0.225 4.225 12 C 0.075 3.925 13 C -0.453 4.453 14 H 0.088 0.912 15 C 0.059 3.941 16 N -0.849 5.849 17 Si 0.912 3.088 18 H -0.278 1.278 19 H -0.274 1.274 20 H -0.220 1.220 21 H 0.104 0.896 22 H 0.093 0.907 23 H 0.122 0.878 24 H 0.146 0.854 25 H 0.133 0.867 26 H 0.118 0.882 27 H 0.082 0.918 28 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.762 -8.250 -2.311 13.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.221 3.779 3 O -0.354 6.354 4 C -0.031 4.031 5 H 0.170 0.830 6 Cl -0.145 7.145 7 C -0.216 4.216 8 C -0.078 4.078 9 C -0.247 4.247 10 C -0.109 4.109 11 C -0.244 4.244 12 C 0.072 3.928 13 C -0.482 4.482 14 H 0.106 0.894 15 C -0.155 4.155 16 N -0.476 5.476 17 Si 0.735 3.265 18 H -0.204 1.204 19 H -0.199 1.199 20 H -0.142 1.142 21 H 0.123 0.877 22 H 0.112 0.888 23 H 0.140 0.860 24 H 0.164 0.836 25 H 0.151 0.849 26 H 0.136 0.864 27 H 0.100 0.900 28 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.093 -7.481 -2.354 12.782 hybrid contribution 1.320 -0.004 0.233 1.340 sum -8.773 -7.485 -2.121 11.726 Atomic orbital electron populations 1.22222 0.89299 1.06683 1.05899 1.25442 0.94114 0.88981 0.69347 1.90442 1.72963 1.35959 1.36074 1.23405 0.84799 0.99147 0.95785 0.83046 1.98716 1.33700 1.97674 1.84425 1.19416 1.05133 1.04350 0.92692 1.20875 0.96968 0.94026 0.95947 1.20877 1.02862 1.05838 0.95137 1.21059 0.95107 0.95321 0.99372 1.21167 1.03115 1.04464 0.95669 1.17719 0.93178 0.90509 0.91365 1.19743 0.93785 1.09730 1.24986 0.89423 1.26548 0.98581 0.98882 0.91462 1.69863 1.11164 1.29272 1.37275 0.86129 0.79209 0.82736 0.78466 1.20423 1.19882 1.14175 0.87745 0.88840 0.85985 0.83626 0.84891 0.86357 0.89989 0.90544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.06 10.25 71.24 0.73 -3.33 15 2 C 0.35 12.29 6.26 29.10 0.18 12.47 15 3 O -0.48 -22.41 15.08 -1.44 -0.02 -22.43 15 4 C 0.01 0.45 3.08 29.10 0.09 0.54 15 5 H 0.15 3.85 7.96 -2.39 -0.02 3.83 15 6 Cl -0.17 -7.64 24.14 -2.72 -0.07 -7.71 15 7 C -0.21 -8.56 4.92 -19.41 -0.10 -8.65 15 8 C -0.06 -1.94 9.65 22.22 0.21 -1.73 15 9 C -0.23 -7.51 10.05 22.46 0.23 -7.29 15 10 C -0.09 -3.44 10.02 22.22 0.22 -3.22 15 11 C -0.22 -10.35 6.73 22.73 0.15 -10.20 15 12 C 0.08 3.66 4.72 -21.29 -0.10 3.56 15 13 C -0.45 -25.09 6.33 23.46 0.15 -24.94 15 14 H 0.09 5.36 4.72 -2.91 -0.01 5.35 15 15 C 0.06 3.27 5.22 85.26 0.45 3.72 15 16 N -0.85 -49.20 13.93 21.83 0.30 -48.90 15 17 Si 0.91 42.85 26.46 68.60 1.82 44.67 15 18 H -0.28 -13.06 7.11 99.48 0.71 -12.35 15 19 H -0.27 -12.30 7.11 99.48 0.71 -11.59 15 20 H -0.22 -10.00 5.41 99.48 0.54 -9.46 15 21 H 0.10 2.21 8.14 -2.39 -0.02 2.19 15 22 H 0.09 1.91 8.14 -2.39 -0.02 1.89 15 23 H 0.12 1.68 8.08 -2.39 -0.02 1.66 15 24 H 0.15 3.28 8.04 -2.91 -0.02 3.26 15 25 H 0.13 3.43 8.06 -2.91 -0.02 3.40 15 26 H 0.12 3.84 8.06 -2.91 -0.02 3.81 15 27 H 0.08 3.92 6.47 -2.91 -0.02 3.90 15 28 H 0.28 15.09 8.30 -92.71 -0.77 14.32 15 Total: -1.00 -68.48 252.43 5.25 -63.23 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 1.00 Total: 10.21 kcal Atomic # 6 Polarization: -41.29 SS G_CDS: 2.22 Total: -39.07 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: 0.30 Total: -48.90 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.02 Total: -22.43 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 1.82 Total: 44.67 kcal Atomic # 17 Polarization: -7.64 SS G_CDS: -0.07 Total: -7.71 kcal Total: -68.48 5.25 -63.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307119994.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.303 kcal (2) G-P(sol) polarization free energy of solvation -68.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds