Wall clock time and date at job start Mon Mar 30 2020 05:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.20759 * 120.00380 * 2 1 4 4 C 1.50700 * 119.99986 * 179.72101 * 2 1 3 5 5 H 1.08995 * 109.47348 * 155.27726 * 4 2 1 6 6 Cl 1.80299 * 109.47320 * 35.27336 * 4 2 1 7 7 C 1.50711 * 109.47119 * 275.27335 * 4 2 1 8 8 C 1.37643 * 120.12066 * 95.00209 * 7 4 2 9 9 C 1.38616 * 120.24077 * 179.97438 * 8 7 4 10 10 C 1.38660 * 120.50528 * 0.02562 * 9 8 7 11 11 C 1.37590 * 120.24548 * 0.02562 * 10 9 8 12 12 C 1.40690 * 120.12882 * 274.72805 * 7 4 2 13 13 C 1.41395 * 120.24598 * 359.97438 * 12 7 4 14 14 H 1.08007 * 119.99594 * 329.37747 * 13 12 7 15 15 C 1.39940 * 120.00345 * 149.38144 * 13 12 7 16 16 N 1.30825 * 120.00490 * 162.27816 * 15 13 12 17 17 Si 1.86804 * 119.99850 * 342.27725 * 15 13 12 18 18 H 1.48507 * 109.47057 * 95.38587 * 17 15 13 19 19 H 1.48500 * 109.47184 * 215.38478 * 17 15 13 20 20 H 1.48501 * 109.47071 * 335.39025 * 17 15 13 21 21 H 1.09003 * 109.46706 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.46835 * 120.00231 * 1 2 3 23 23 H 1.09005 * 109.46756 * 240.00274 * 1 2 3 24 24 H 1.07993 * 119.88201 * 359.97438 * 8 7 4 25 25 H 1.07999 * 119.74609 * 180.02562 * 9 8 7 26 26 H 1.07997 * 119.87396 * 180.02562 * 10 9 8 27 27 H 1.07999 * 120.12471 * 179.97438 * 11 10 9 28 28 H 0.96995 * 119.99938 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0458 0.0000 4 6 2.2605 -1.3051 0.0064 5 1 3.2506 -1.1552 -0.4242 6 17 1.3592 -2.5243 -0.9693 7 6 2.3986 -1.7986 1.4237 8 6 1.4908 -2.6991 1.9331 9 6 1.6157 -3.1550 3.2361 10 6 2.6537 -2.7104 4.0409 11 6 3.5721 -1.8096 3.5529 12 6 3.4591 -1.3449 2.2292 13 6 4.4013 -0.4248 1.7146 14 1 4.6417 -0.4301 0.6616 15 6 5.0223 0.4927 2.5694 16 7 6.1198 1.0977 2.1938 17 14 4.2842 0.8538 4.2471 18 1 4.9436 0.0043 5.2712 19 1 4.4932 2.2853 4.5821 20 1 2.8290 0.5586 4.2215 21 1 -0.3633 1.0277 -0.0005 22 1 -0.3633 -0.5139 -0.8900 23 1 -0.3633 -0.5138 0.8901 24 1 0.6782 -3.0517 1.3153 25 1 0.8991 -3.8619 3.6275 26 1 2.7416 -3.0727 5.0545 27 1 4.3795 -1.4643 4.1815 28 1 6.5504 1.7333 2.7866 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307119995.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:59 Heat of formation + Delta-G solvation = -51.526842 kcal Electronic energy + Delta-G solvation = -14806.555006 eV Core-core repulsion = 12233.161080 eV Total energy + Delta-G solvation = -2573.393927 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.77605 -39.43359 -37.03939 -35.55521 -33.50866 -32.29735 -30.95884 -28.23934 -26.72896 -23.28730 -22.23559 -20.46922 -19.31804 -17.82376 -17.02385 -16.86628 -16.56347 -15.82438 -15.67756 -15.33907 -14.65695 -14.25507 -13.86076 -13.66822 -13.41625 -13.10059 -13.07842 -12.80647 -12.59999 -12.21618 -12.02526 -11.82486 -11.57522 -11.21953 -11.02380 -10.68008 -9.48950 -9.41633 -8.93100 -6.52743 0.44304 0.80120 0.94063 1.20720 1.29732 1.36244 1.42658 2.06068 2.59784 3.02633 3.47688 3.87563 4.00182 4.28781 4.38350 4.44619 4.63696 4.65430 4.79800 4.87741 5.06028 5.12651 5.28710 5.52685 5.78143 5.81648 5.97734 6.18939 6.37443 6.45177 6.66531 6.78523 8.15323 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.023670 B = 0.011761 C = 0.009420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.636107 B = 2380.252360 C = 2971.693967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.362 3.638 3 O -0.477 6.477 4 C 0.028 3.972 5 H 0.096 0.904 6 Cl -0.151 7.151 7 C -0.214 4.214 8 C -0.056 4.056 9 C -0.226 4.226 10 C -0.074 4.074 11 C -0.252 4.252 12 C 0.084 3.916 13 C -0.468 4.468 14 H 0.058 0.942 15 C 0.048 3.952 16 N -0.846 5.846 17 Si 0.959 3.041 18 H -0.253 1.253 19 H -0.283 1.283 20 H -0.253 1.253 21 H 0.090 0.910 22 H 0.119 0.881 23 H 0.108 0.892 24 H 0.138 0.862 25 H 0.137 0.863 26 H 0.129 0.871 27 H 0.096 0.904 28 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.234 -5.271 0.186 12.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.238 3.762 3 O -0.352 6.352 4 C -0.017 4.017 5 H 0.114 0.886 6 Cl -0.124 7.124 7 C -0.216 4.216 8 C -0.074 4.074 9 C -0.245 4.245 10 C -0.092 4.092 11 C -0.271 4.271 12 C 0.081 3.919 13 C -0.497 4.497 14 H 0.076 0.924 15 C -0.167 4.167 16 N -0.472 5.472 17 Si 0.783 3.217 18 H -0.178 1.178 19 H -0.210 1.210 20 H -0.177 1.177 21 H 0.109 0.891 22 H 0.137 0.863 23 H 0.127 0.873 24 H 0.156 0.844 25 H 0.155 0.845 26 H 0.147 0.853 27 H 0.114 0.886 28 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.745 -4.619 0.084 11.696 hybrid contribution 0.654 0.384 0.301 0.816 sum -10.091 -4.235 0.384 10.950 Atomic orbital electron populations 1.22305 0.90175 1.05883 1.06569 1.25113 0.94059 0.88180 0.68842 1.90456 1.73259 1.34849 1.36644 1.23154 0.97226 0.88489 0.92786 0.88595 1.98653 1.78631 1.61340 1.73763 1.19271 0.99982 1.08361 0.93949 1.21000 0.96908 0.93936 0.95537 1.20960 1.01884 1.06898 0.94748 1.21112 0.93748 0.94871 0.99481 1.21148 1.03393 1.05478 0.97122 1.17652 0.90252 0.91634 0.92359 1.19383 1.19028 1.15029 0.96240 0.92438 1.26783 0.92801 0.94095 1.02978 1.69715 1.14915 1.22812 1.39774 0.85586 0.81155 0.77006 0.77961 1.17760 1.20976 1.17682 0.89139 0.86257 0.87327 0.84444 0.84475 0.85278 0.88573 0.89736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.05 9.59 71.24 0.68 -4.37 15 2 C 0.36 13.78 6.37 29.10 0.19 13.97 15 3 O -0.48 -22.56 17.81 -1.45 -0.03 -22.58 15 4 C 0.03 1.09 2.90 29.11 0.08 1.17 15 5 H 0.10 4.29 6.52 -2.39 -0.02 4.28 15 6 Cl -0.15 -4.52 25.31 -2.72 -0.07 -4.59 15 7 C -0.21 -9.04 5.06 -19.40 -0.10 -9.14 15 8 C -0.06 -1.99 9.15 22.22 0.20 -1.78 15 9 C -0.23 -7.69 10.05 22.46 0.23 -7.47 15 10 C -0.07 -2.79 10.02 22.22 0.22 -2.56 15 11 C -0.25 -11.47 7.16 22.73 0.16 -11.31 15 12 C 0.08 4.13 5.09 -21.29 -0.11 4.02 15 13 C -0.47 -26.05 8.89 23.46 0.21 -25.84 15 14 H 0.06 3.49 6.64 -2.91 -0.02 3.47 15 15 C 0.05 2.65 5.41 85.26 0.46 3.11 15 16 N -0.85 -47.73 13.93 21.83 0.30 -47.43 15 17 Si 0.96 43.71 24.52 68.60 1.68 45.40 15 18 H -0.25 -10.64 6.72 99.48 0.67 -9.97 15 19 H -0.28 -12.38 7.11 99.48 0.71 -11.68 15 20 H -0.25 -11.68 6.85 99.48 0.68 -11.00 15 21 H 0.09 2.19 8.12 -2.39 -0.02 2.17 15 22 H 0.12 2.50 7.36 -2.39 -0.02 2.48 15 23 H 0.11 2.59 8.14 -2.38 -0.02 2.57 15 24 H 0.14 4.04 6.62 -2.91 -0.02 4.02 15 25 H 0.14 3.65 8.06 -2.91 -0.02 3.63 15 26 H 0.13 3.98 8.06 -2.91 -0.02 3.96 15 27 H 0.10 4.44 4.77 -2.91 -0.01 4.42 15 28 H 0.29 14.90 8.30 -92.71 -0.77 14.13 15 Total: -1.00 -62.16 254.51 5.24 -56.92 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 1.12 Total: 12.48 kcal Atomic # 6 Polarization: -42.43 SS G_CDS: 2.23 Total: -40.20 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: 0.30 Total: -47.43 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.03 Total: -22.58 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.68 Total: 45.40 kcal Atomic # 17 Polarization: -4.52 SS G_CDS: -0.07 Total: -4.59 kcal Total: -62.16 5.24 -56.92 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307119995.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.396 kcal (2) G-P(sol) polarization free energy of solvation -62.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds