Wall clock time and date at job start Mon Mar 30 2020 05:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30924 * 1 3 3 Si 1.86796 * 120.00189 * 2 1 4 4 H 1.48491 * 109.47363 * 239.99674 * 3 2 1 5 5 H 1.48504 * 109.47028 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47295 * 119.99725 * 3 2 1 7 7 C 1.39849 * 119.99882 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00210 * 162.60842 * 7 2 1 9 9 C 1.41198 * 120.00064 * 342.60495 * 7 2 1 10 10 C 1.39968 * 120.07969 * 334.47057 * 9 7 2 11 11 C 1.40374 * 120.02220 * 179.74630 * 10 9 7 12 12 C 1.45847 * 129.16337 * 180.02562 * 11 10 9 13 13 O 1.36189 * 122.59987 * 359.95178 * 12 11 10 14 14 C 1.31893 * 114.80099 * 179.97438 * 12 11 10 15 15 S 1.75244 * 111.54572 * 359.97438 * 14 12 11 16 16 C 1.40233 * 119.09890 * 359.97438 * 11 10 9 17 17 C 1.40395 * 120.18219 * 0.02562 * 16 11 10 18 18 C 1.35919 * 120.80958 * 0.02562 * 17 16 11 19 19 F 1.35103 * 119.97871 * 180.02562 * 18 17 16 20 20 H 0.96993 * 120.00104 * 0.02562 * 1 2 3 21 21 H 1.08005 * 119.98539 * 359.72205 * 10 9 7 22 22 H 0.96698 * 114.00029 * 90.00262 * 13 12 11 23 23 H 1.07998 * 124.23026 * 180.02562 * 14 12 11 24 24 H 1.08000 * 119.59685 * 180.02562 * 17 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2433 1.6177 0.0000 4 1 3.0971 1.6963 -1.2124 5 1 1.2783 2.7464 -0.0006 6 1 3.0970 1.6964 1.2126 7 6 2.0085 -1.2111 0.0005 8 1 3.0514 -1.2327 -0.2790 9 6 1.3509 -2.4058 0.3666 10 6 0.2345 -2.3621 1.2097 11 6 -0.4216 -3.5501 1.5686 12 6 -1.5887 -3.7357 2.4234 13 8 -2.2315 -2.6958 3.0235 14 6 -1.9730 -4.9888 2.5705 15 16 -0.9435 -6.0872 1.6734 16 6 0.0573 -4.7706 1.0712 17 6 1.1784 -4.7975 0.2265 18 6 1.8156 -3.6484 -0.1214 19 9 2.8926 -3.6937 -0.9358 20 1 -0.4850 0.8400 -0.0004 21 1 -0.1221 -1.4140 1.5846 22 1 -2.9452 -2.3158 2.4931 23 1 -2.8171 -5.2991 3.1683 24 1 1.5389 -5.7428 -0.1516 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307122314.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:53 Heat of formation + Delta-G solvation = -58.239129 kcal Electronic energy + Delta-G solvation = -14143.631517 eV Core-core repulsion = 11448.529925 eV Total energy + Delta-G solvation = -2695.101592 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -47.56659 -38.63893 -36.70449 -34.19488 -32.32712 -29.82458 -28.20744 -25.53010 -22.23928 -21.75792 -20.04639 -17.73270 -17.05850 -16.66226 -15.70097 -15.36838 -14.98905 -14.39245 -14.21379 -13.82241 -12.83899 -12.65341 -12.38506 -12.03839 -11.89312 -11.67805 -11.30785 -10.97315 -10.65184 -10.51909 -9.93439 -9.88629 -9.57817 -9.28819 -8.43613 -7.48554 -7.00101 -6.87235 -4.55558 1.61769 2.34319 2.40490 2.80658 2.94064 2.97631 3.01103 3.10716 3.78523 4.29438 4.88662 5.20955 5.38429 5.70477 5.82041 6.26588 6.39948 6.60672 6.79290 6.92139 6.96605 7.20826 7.43155 7.72778 7.77379 8.11615 8.28303 8.51947 8.55823 9.93636 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.028626 B = 0.009288 C = 0.007160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.911090 B = 3013.985179 C = 3909.940957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.075 3.925 3 Si 0.917 3.083 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.445 4.445 8 H 0.087 0.913 9 C 0.082 3.918 10 C -0.114 4.114 11 C -0.079 4.079 12 C 0.118 3.882 13 O -0.486 6.486 14 C -0.245 4.245 15 S 0.037 5.963 16 C -0.210 4.210 17 C -0.098 4.098 18 C 0.025 3.975 19 F -0.154 7.154 20 H 0.287 0.713 21 H 0.135 0.865 22 H 0.384 0.616 23 H 0.157 0.843 24 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.020 -2.827 1.880 4.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.145 4.145 3 Si 0.741 3.259 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.474 4.474 8 H 0.105 0.895 9 C 0.077 3.923 10 C -0.137 4.137 11 C -0.085 4.085 12 C 0.060 3.940 13 O -0.295 6.295 14 C -0.378 4.378 15 S 0.294 5.706 16 C -0.325 4.325 17 C -0.122 4.122 18 C 0.003 3.997 19 F -0.133 7.133 20 H 0.098 0.902 21 H 0.152 0.848 22 H 0.239 0.761 23 H 0.174 0.826 24 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.833 -4.303 2.144 5.580 hybrid contribution 0.022 2.283 -0.343 2.309 sum -2.811 -2.020 1.801 3.902 Atomic orbital electron populations 1.69810 1.07679 1.30061 1.33090 1.25949 0.94860 1.01712 0.91995 0.86203 0.80101 0.79328 0.80313 1.18704 1.20048 1.18492 1.19494 0.98400 0.90774 1.38701 0.89475 1.17440 0.92800 0.90967 0.91076 1.20959 0.97808 0.95523 0.99401 1.19213 0.96303 0.94163 0.98797 1.18252 0.93379 0.86597 0.95748 1.84832 1.51651 1.48390 1.44652 1.24698 1.06708 0.96634 1.09798 1.83304 1.27604 1.09483 1.50205 1.21322 1.04420 0.94790 1.11956 1.19462 0.95857 0.96615 1.00227 1.17374 0.89578 0.94601 0.98104 1.91327 1.53495 1.97307 1.71154 0.90236 0.84783 0.76050 0.82581 0.87191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.04 10.99 55.54 0.61 -18.43 14 2 C 0.07 1.78 5.13 -17.34 -0.09 1.70 14 3 Si 0.92 17.89 29.59 -169.99 -5.03 12.86 14 4 H -0.26 -5.08 7.11 56.52 0.40 -4.68 14 5 H -0.28 -5.19 7.11 56.52 0.40 -4.79 14 6 H -0.26 -5.07 7.11 56.52 0.40 -4.67 14 7 C -0.44 -11.45 8.75 -37.86 -0.33 -11.78 14 8 H 0.09 2.19 7.74 -52.49 -0.41 1.78 14 9 C 0.08 2.13 5.56 -106.94 -0.59 1.53 14 10 C -0.11 -2.90 8.72 -38.13 -0.33 -3.23 14 11 C -0.08 -1.85 6.04 -105.30 -0.64 -2.49 14 12 C 0.12 2.41 6.90 -38.45 -0.27 2.14 14 13 O -0.49 -8.94 13.61 -20.34 -0.28 -9.21 14 14 C -0.24 -4.42 10.96 28.83 0.32 -4.10 14 15 S 0.04 0.68 23.23 -107.50 -2.50 -1.82 14 16 C -0.21 -4.71 6.51 -38.02 -0.25 -4.96 14 17 C -0.10 -2.22 9.95 -39.60 -0.39 -2.62 14 18 C 0.03 0.62 7.23 -39.23 -0.28 0.34 14 19 F -0.15 -3.70 16.69 2.25 0.04 -3.66 14 20 H 0.29 6.30 8.30 -40.82 -0.34 5.96 14 21 H 0.13 3.48 6.19 -52.48 -0.32 3.15 14 22 H 0.38 5.29 9.07 45.56 0.41 5.70 14 23 H 0.16 2.32 8.06 -52.49 -0.42 1.90 14 24 H 0.11 2.20 8.06 -52.49 -0.42 1.77 14 LS Contribution 238.58 15.07 3.60 3.60 Total: -1.00 -27.29 238.58 -6.72 -34.01 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -0.30 Total: 6.13 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: -2.86 Total: -23.47 kcal Atomic # 7 Polarization: -19.04 SS G_CDS: 0.61 Total: -18.43 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -0.28 Total: -9.21 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.04 Total: -3.66 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.03 Total: 12.86 kcal Atomic # 16 Polarization: 0.68 SS G_CDS: -2.50 Total: -1.82 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -27.29 -6.72 -34.01 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307122314.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.230 kcal (2) G-P(sol) polarization free energy of solvation -27.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds