Wall clock time and date at job start Mon Mar 30 2020 05:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30926 * 1 3 3 Si 1.86801 * 119.99771 * 2 1 4 4 H 1.48494 * 109.47008 * 240.00087 * 3 2 1 5 5 H 1.48505 * 109.47130 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47115 * 119.99609 * 3 2 1 7 7 C 1.39830 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99908 * 197.94698 * 7 2 1 9 9 C 1.41212 * 120.00192 * 17.95510 * 7 2 1 10 10 C 1.39957 * 120.05302 * 25.06569 * 9 7 2 11 11 C 1.40508 * 120.24716 * 180.02562 * 10 9 7 12 12 C 1.45640 * 129.06374 * 180.02562 * 11 10 9 13 13 C 1.31658 * 114.89928 * 179.97438 * 12 11 10 14 14 S 1.75267 * 111.51689 * 0.02562 * 13 12 11 15 15 C 1.40106 * 119.18673 * 0.02562 * 11 10 9 16 16 C 1.40761 * 120.19342 * 359.78324 * 15 11 10 17 17 O 1.36009 * 119.69483 * 180.28605 * 16 15 11 18 18 C 1.37315 * 120.60444 * 0.41526 * 16 15 11 19 19 F 1.35108 * 120.06477 * 179.79975 * 18 16 15 20 20 H 0.96997 * 120.00119 * 0.02562 * 1 2 3 21 21 H 1.08003 * 119.87307 * 0.02562 * 10 9 7 22 22 H 1.07996 * 122.54596 * 359.94828 * 12 11 10 23 23 H 1.08002 * 124.24409 * 180.02562 * 13 12 11 24 24 H 0.96691 * 114.00366 * 90.00206 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2432 1.6178 0.0000 4 1 3.0969 1.6965 -1.2125 5 1 1.2781 2.7465 -0.0006 6 1 3.0969 1.6965 1.2125 7 6 2.0084 -1.2110 0.0005 8 1 3.0490 -1.2336 0.2888 9 6 1.3540 -2.4043 -0.3759 10 6 0.2390 -2.3558 -1.2204 11 6 -0.4157 -3.5407 -1.5972 12 6 -1.5786 -3.7132 -2.4567 13 6 -1.9635 -4.9611 -2.6246 14 16 -0.9377 -6.0746 -1.7416 15 6 0.0615 -4.7672 -1.1168 16 6 1.1860 -4.8072 -0.2710 17 8 1.6440 -6.0040 0.1847 18 6 1.8230 -3.6488 0.1002 19 9 2.8990 -3.6996 0.9157 20 1 -0.4850 0.8400 -0.0004 21 1 -0.1196 -1.4041 -1.5839 22 1 -2.0868 -2.8809 -2.9207 23 1 -2.8058 -5.2610 -3.2305 24 1 2.3044 -6.4165 -0.3885 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307159838.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:29 Heat of formation + Delta-G solvation = -58.247313 kcal Electronic energy + Delta-G solvation = -14216.627564 eV Core-core repulsion = 11521.525617 eV Total energy + Delta-G solvation = -2695.101947 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -47.52083 -38.42641 -36.45917 -34.81366 -32.62445 -29.23908 -27.84155 -25.66568 -22.32435 -21.69186 -19.88102 -18.07352 -17.00982 -16.43927 -16.07640 -15.32331 -14.83039 -14.53951 -13.82983 -13.54564 -13.18249 -12.60400 -12.26779 -12.15969 -12.00788 -11.66021 -11.30891 -10.87194 -10.54000 -10.35150 -10.17552 -9.85978 -9.58038 -9.25266 -8.42726 -7.46448 -7.02016 -6.81657 -4.58926 1.67808 2.27931 2.43876 2.88293 2.92413 2.96257 2.99456 3.18866 3.76657 4.26398 4.90776 5.16641 5.40246 5.68618 5.98427 6.25824 6.41239 6.56143 6.83576 6.88538 6.91321 7.13649 7.41430 7.62184 7.71052 8.16328 8.33481 8.51181 8.56167 9.91514 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.030869 B = 0.009139 C = 0.007197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.833096 B = 3063.182318 C = 3889.713675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.075 3.925 3 Si 0.917 3.083 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.444 4.444 8 H 0.088 0.912 9 C 0.091 3.909 10 C -0.127 4.127 11 C -0.051 4.051 12 C -0.107 4.107 13 C -0.207 4.207 14 S 0.024 5.976 15 C -0.234 4.234 16 C 0.116 3.884 17 O -0.496 6.496 18 C -0.001 4.001 19 F -0.147 7.147 20 H 0.287 0.713 21 H 0.134 0.866 22 H 0.133 0.867 23 H 0.152 0.848 24 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.856 -2.863 -4.375 5.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.145 4.145 3 Si 0.741 3.259 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.473 4.473 8 H 0.106 0.894 9 C 0.086 3.914 10 C -0.149 4.149 11 C -0.057 4.057 12 C -0.138 4.138 13 C -0.340 4.340 14 S 0.283 5.717 15 C -0.349 4.349 16 C 0.066 3.934 17 O -0.304 6.304 18 C -0.024 4.024 19 F -0.126 7.126 20 H 0.098 0.902 21 H 0.152 0.848 22 H 0.151 0.849 23 H 0.170 0.830 24 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -1.463 -4.146 -3.726 5.763 hybrid contribution 0.691 2.097 -0.330 2.233 sum -0.772 -2.049 -4.056 4.609 Atomic orbital electron populations 1.69827 1.07672 1.30143 1.32804 1.25952 0.94847 1.01725 0.91973 0.86196 0.80097 0.79272 0.80353 1.18481 1.20026 1.18654 1.19469 0.98626 0.90714 1.38474 0.89436 1.17297 0.92633 0.90500 0.90973 1.21030 0.98191 0.95601 1.00126 1.19071 0.95528 0.92982 0.98122 1.20978 0.96682 0.96638 0.99513 1.24720 1.05163 0.96952 1.07202 1.83433 1.27584 1.09904 1.50826 1.21968 1.05139 0.96008 1.11751 1.17226 0.94306 0.83651 0.98174 1.84833 1.61415 1.33365 1.50802 1.17880 0.90473 0.93866 1.00140 1.91315 1.53224 1.97199 1.70864 0.90152 0.84802 0.84913 0.82993 0.77150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.94 10.99 55.54 0.61 -18.33 14 2 C 0.08 1.78 5.12 -17.34 -0.09 1.69 14 3 Si 0.92 17.65 29.60 -169.99 -5.03 12.62 14 4 H -0.26 -4.95 7.11 56.52 0.40 -4.55 14 5 H -0.28 -5.12 7.11 56.52 0.40 -4.72 14 6 H -0.26 -5.04 7.11 56.52 0.40 -4.64 14 7 C -0.44 -11.36 8.75 -37.86 -0.33 -11.69 14 8 H 0.09 2.19 7.73 -52.49 -0.41 1.78 14 9 C 0.09 2.35 5.56 -106.98 -0.59 1.76 14 10 C -0.13 -3.15 8.74 -38.08 -0.33 -3.49 14 11 C -0.05 -1.18 6.03 -105.39 -0.64 -1.81 14 12 C -0.11 -2.05 10.39 -38.50 -0.40 -2.45 14 13 C -0.21 -3.59 11.00 28.86 0.32 -3.27 14 14 S 0.02 0.46 23.20 -107.50 -2.49 -2.04 14 15 C -0.23 -5.33 6.45 -37.93 -0.24 -5.58 14 16 C 0.12 2.73 6.71 -38.96 -0.26 2.47 14 17 O -0.50 -10.29 13.30 -19.77 -0.26 -10.55 14 18 C 0.00 -0.04 7.28 -38.77 -0.28 -0.32 14 19 F -0.15 -3.67 16.51 2.25 0.04 -3.63 14 20 H 0.29 6.29 8.30 -40.82 -0.34 5.95 14 21 H 0.13 3.33 6.15 -52.48 -0.32 3.00 14 22 H 0.13 2.22 8.06 -52.49 -0.42 1.80 14 23 H 0.15 2.07 8.06 -52.49 -0.42 1.65 14 24 H 0.37 5.87 9.06 45.56 0.41 6.28 14 LS Contribution 238.30 15.07 3.59 3.59 Total: -1.00 -27.78 238.30 -6.70 -34.48 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -0.30 Total: 6.55 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: -2.85 Total: -22.69 kcal Atomic # 7 Polarization: -18.94 SS G_CDS: 0.61 Total: -18.33 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: -0.26 Total: -10.55 kcal Atomic # 9 Polarization: -3.67 SS G_CDS: 0.04 Total: -3.63 kcal Atomic # 14 Polarization: 17.65 SS G_CDS: -5.03 Total: 12.62 kcal Atomic # 16 Polarization: 0.46 SS G_CDS: -2.49 Total: -2.04 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -27.78 -6.70 -34.48 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307159838.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.769 kcal (2) G-P(sol) polarization free energy of solvation -27.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds