Wall clock time and date at job start Mon Mar 30 2020 05:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30926 * 1 3 3 Si 1.86801 * 119.99771 * 2 1 4 4 H 1.48494 * 109.47008 * 240.00087 * 3 2 1 5 5 H 1.48505 * 109.47130 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47115 * 119.99609 * 3 2 1 7 7 C 1.39830 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99908 * 197.94698 * 7 2 1 9 9 C 1.41212 * 120.00192 * 17.95510 * 7 2 1 10 10 C 1.39957 * 120.05302 * 25.06569 * 9 7 2 11 11 C 1.40508 * 120.24716 * 180.02562 * 10 9 7 12 12 C 1.45640 * 129.06374 * 180.02562 * 11 10 9 13 13 C 1.31658 * 114.89928 * 179.97438 * 12 11 10 14 14 S 1.75267 * 111.51689 * 0.02562 * 13 12 11 15 15 C 1.40106 * 119.18673 * 0.02562 * 11 10 9 16 16 C 1.40761 * 120.19342 * 359.78324 * 15 11 10 17 17 O 1.36009 * 119.69483 * 180.28605 * 16 15 11 18 18 C 1.37315 * 120.60444 * 0.41526 * 16 15 11 19 19 F 1.35108 * 120.06477 * 179.79975 * 18 16 15 20 20 H 0.96997 * 120.00119 * 0.02562 * 1 2 3 21 21 H 1.08003 * 119.87307 * 0.02562 * 10 9 7 22 22 H 1.07996 * 122.54596 * 359.94828 * 12 11 10 23 23 H 1.08002 * 124.24409 * 180.02562 * 13 12 11 24 24 H 0.96691 * 114.00366 * 90.00206 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2432 1.6178 0.0000 4 1 3.0969 1.6965 -1.2125 5 1 1.2781 2.7465 -0.0006 6 1 3.0969 1.6965 1.2125 7 6 2.0084 -1.2110 0.0005 8 1 3.0490 -1.2336 0.2888 9 6 1.3540 -2.4043 -0.3759 10 6 0.2390 -2.3558 -1.2204 11 6 -0.4157 -3.5407 -1.5972 12 6 -1.5786 -3.7132 -2.4567 13 6 -1.9635 -4.9611 -2.6246 14 16 -0.9377 -6.0746 -1.7416 15 6 0.0615 -4.7672 -1.1168 16 6 1.1860 -4.8072 -0.2710 17 8 1.6440 -6.0040 0.1847 18 6 1.8230 -3.6488 0.1002 19 9 2.8990 -3.6996 0.9157 20 1 -0.4850 0.8400 -0.0004 21 1 -0.1196 -1.4041 -1.5839 22 1 -2.0868 -2.8809 -2.9207 23 1 -2.8058 -5.2610 -3.2305 24 1 2.3044 -6.4165 -0.3885 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307159838.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:29 Heat of formation + Delta-G solvation = -75.581923 kcal Electronic energy + Delta-G solvation = -14217.379249 eV Core-core repulsion = 11521.525617 eV Total energy + Delta-G solvation = -2695.853632 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.43691 -40.16884 -38.14746 -36.53627 -34.35298 -31.00935 -29.59200 -27.49175 -24.00104 -23.46093 -21.55110 -19.77804 -18.77275 -18.21544 -17.87541 -17.00611 -16.59298 -16.29900 -15.58405 -15.09416 -14.87022 -14.37092 -13.93585 -13.90180 -13.67777 -13.34058 -12.88627 -12.55418 -12.11900 -12.07513 -11.81852 -11.57043 -11.28439 -10.97757 -10.13561 -9.23591 -8.78976 -8.47366 -6.47233 0.00071 0.48909 0.87699 1.30441 1.33659 1.38352 1.50397 1.59520 2.16458 2.49899 3.21905 3.30360 3.82380 4.01809 4.48110 4.52754 4.78896 4.92962 5.08765 5.16867 5.21481 5.38393 5.67732 5.82425 5.86474 6.34915 6.56617 6.66312 6.82080 8.17214 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.030869 B = 0.009139 C = 0.007197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.833096 B = 3063.182318 C = 3889.713675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.040 3.960 3 Si 0.989 3.011 4 H -0.256 1.256 5 H -0.260 1.260 6 H -0.262 1.262 7 C -0.482 4.482 8 H 0.079 0.921 9 C 0.068 3.932 10 C -0.150 4.150 11 C -0.057 4.057 12 C -0.133 4.133 13 C -0.178 4.178 14 S 0.062 5.938 15 C -0.261 4.261 16 C 0.122 3.878 17 O -0.499 6.499 18 C -0.040 4.040 19 F -0.154 7.154 20 H 0.297 0.703 21 H 0.126 0.874 22 H 0.157 0.843 23 H 0.201 0.799 24 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.119 -3.330 -5.540 6.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.178 4.178 3 Si 0.808 3.192 4 H -0.180 1.180 5 H -0.184 1.184 6 H -0.186 1.186 7 C -0.510 4.510 8 H 0.097 0.903 9 C 0.063 3.937 10 C -0.172 4.172 11 C -0.064 4.064 12 C -0.164 4.164 13 C -0.311 4.311 14 S 0.321 5.679 15 C -0.376 4.376 16 C 0.073 3.927 17 O -0.310 6.310 18 C -0.062 4.062 19 F -0.134 7.134 20 H 0.108 0.892 21 H 0.143 0.857 22 H 0.174 0.826 23 H 0.218 0.782 24 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -2.723 -4.648 -4.899 7.282 hybrid contribution 0.989 2.025 -0.010 2.254 sum -1.734 -2.623 -4.910 5.830 Atomic orbital electron populations 1.69851 1.08927 1.31603 1.32776 1.26777 0.95605 1.04544 0.90851 0.85140 0.78838 0.74942 0.80236 1.18032 1.18370 1.18647 1.19669 0.98631 0.92085 1.40622 0.90304 1.17625 0.93452 0.91097 0.91518 1.20985 0.98868 0.96184 1.01168 1.19524 0.96350 0.92448 0.98057 1.21111 0.96323 0.98518 1.00422 1.25290 1.04938 0.95610 1.05246 1.83299 1.26407 1.08153 1.50079 1.22392 1.05480 0.98096 1.11615 1.17291 0.94239 0.83867 0.97337 1.84747 1.62263 1.32292 1.51716 1.18144 0.91492 0.94755 1.01763 1.91272 1.53581 1.97268 1.71236 0.89166 0.85665 0.82594 0.78210 0.74400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.94 10.99 21.81 0.24 -39.70 14 2 C 0.04 1.93 5.12 85.21 0.44 2.36 14 3 Si 0.99 36.40 29.60 68.60 2.03 38.43 14 4 H -0.26 -9.18 7.11 99.48 0.71 -8.47 14 5 H -0.26 -8.82 7.11 99.48 0.71 -8.11 14 6 H -0.26 -9.57 7.11 99.48 0.71 -8.86 14 7 C -0.48 -25.75 8.75 23.39 0.20 -25.55 14 8 H 0.08 4.17 7.73 -2.91 -0.02 4.15 14 9 C 0.07 3.67 5.56 -21.39 -0.12 3.56 14 10 C -0.15 -7.66 8.74 23.24 0.20 -7.46 14 11 C -0.06 -2.62 6.03 -20.36 -0.12 -2.74 14 12 C -0.13 -4.78 10.39 23.53 0.24 -4.54 14 13 C -0.18 -5.39 11.00 67.17 0.74 -4.66 14 14 S 0.06 2.15 23.20 -56.49 -1.31 0.84 14 15 C -0.26 -11.70 6.45 23.34 0.15 -11.55 14 16 C 0.12 5.80 6.71 22.67 0.15 5.95 14 17 O -0.50 -20.36 13.30 -93.65 -1.25 -21.61 14 18 C -0.04 -2.07 7.28 22.80 0.17 -1.91 14 19 F -0.15 -8.04 16.51 44.97 0.74 -7.29 14 20 H 0.30 13.06 8.30 -92.71 -0.77 12.29 14 21 H 0.13 6.46 6.15 -2.91 -0.02 6.44 14 22 H 0.16 4.80 8.06 -2.91 -0.02 4.78 14 23 H 0.20 4.15 8.06 -2.91 -0.02 4.13 14 24 H 0.40 12.02 9.06 -74.06 -0.67 11.35 14 Total: -1.00 -61.27 238.30 3.10 -58.16 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 0.59 Total: 17.70 kcal Atomic # 6 Polarization: -48.58 SS G_CDS: 2.05 Total: -46.53 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.24 Total: -39.70 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -1.25 Total: -21.61 kcal Atomic # 9 Polarization: -8.04 SS G_CDS: 0.74 Total: -7.29 kcal Atomic # 14 Polarization: 36.40 SS G_CDS: 2.03 Total: 38.43 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -1.31 Total: 0.84 kcal Total: -61.27 3.10 -58.16 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307159838.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.417 kcal (2) G-P(sol) polarization free energy of solvation -61.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds