Wall clock time and date at job start Mon Mar 30 2020 05:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30931 * 1 3 3 Si 1.86800 * 120.00134 * 2 1 4 4 H 1.48501 * 109.47298 * 239.99938 * 3 2 1 5 5 H 1.48499 * 109.47348 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47384 * 119.99941 * 3 2 1 7 7 C 1.40011 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99967 * 179.72448 * 7 2 1 9 9 C 1.39665 * 120.00224 * 0.02562 * 7 2 1 10 10 S 1.75426 * 124.84481 * 359.42177 * 9 7 2 11 11 C 1.76004 * 91.90890 * 179.91700 * 10 9 7 12 12 C 1.39610 * 130.04590 * 180.02562 * 11 10 9 13 13 C 1.37717 * 120.51518 * 180.33835 * 12 11 10 14 14 C 1.38810 * 120.23377 * 359.97438 * 13 12 11 15 15 C 1.37291 * 120.42351 * 0.02562 * 14 13 12 16 16 F 1.35102 * 119.83869 * 180.02562 * 15 14 13 17 17 C 1.40097 * 110.10994 * 0.34782 * 11 10 9 18 18 C 1.37632 * 124.85182 * 179.72555 * 9 7 2 19 19 O 1.35635 * 122.63032 * 359.97438 * 18 9 7 20 20 H 0.97000 * 119.99525 * 0.02562 * 1 2 3 21 21 H 1.07999 * 119.74084 * 0.32153 * 12 11 10 22 22 H 1.07998 * 119.88421 * 180.02562 * 13 12 11 23 23 H 1.08004 * 119.78870 * 180.02562 * 14 13 12 24 24 H 0.96697 * 113.99796 * 90.01964 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2434 1.6177 0.0000 4 1 3.0971 1.6964 -1.2125 5 1 1.2784 2.7465 -0.0006 6 1 3.0971 1.6964 1.2125 7 6 2.0094 -1.2125 0.0005 8 1 3.0894 -1.2125 -0.0040 9 6 1.3111 -2.4221 0.0005 10 16 -0.4368 -2.5703 0.0144 11 6 -0.3467 -4.3280 0.0027 12 6 -1.3680 -5.2799 0.0049 13 6 -1.0707 -6.6246 0.0010 14 6 0.2512 -7.0481 -0.0056 15 6 1.2745 -6.1328 -0.0079 16 9 2.5568 -6.5581 -0.0150 17 6 0.9918 -4.7417 -0.0033 18 6 1.8960 -3.6679 -0.0044 19 8 3.2408 -3.8445 -0.0103 20 1 -0.4849 0.8401 -0.0004 21 1 -2.3993 -4.9592 0.0099 22 1 -1.8688 -7.3522 0.0024 23 1 0.4762 -8.1044 -0.0090 24 1 3.6344 -3.8977 0.8713 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307171987.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:40 Heat of formation + Delta-G solvation = -75.800835 kcal Electronic energy + Delta-G solvation = -14157.315507 eV Core-core repulsion = 11461.452383 eV Total energy + Delta-G solvation = -2695.863125 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -47.76110 -38.24017 -36.28170 -34.45800 -32.23516 -29.33279 -29.16554 -25.34190 -22.56565 -21.44765 -19.65743 -18.21167 -16.72254 -16.25865 -15.75844 -15.03648 -14.89539 -14.55851 -14.02459 -13.71832 -13.40806 -12.53581 -12.20388 -11.98013 -11.89642 -11.59907 -11.33513 -11.02826 -10.78609 -10.41865 -10.32543 -9.45682 -9.39587 -9.05155 -8.27172 -7.62518 -7.34810 -6.45791 -4.75599 1.84228 2.13700 2.72783 2.77752 2.82900 3.05319 3.31626 3.45735 3.64378 4.43860 4.73923 5.34725 5.63065 5.75027 5.86557 6.11949 6.51813 6.56868 6.65883 6.87950 7.05700 7.21227 7.32621 7.42787 7.72123 7.86398 8.01592 8.23180 9.12096 9.48403 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.039112 B = 0.008815 C = 0.007217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.717889 B = 3175.700225 C = 3878.998645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.049 3.951 3 Si 0.944 3.056 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.258 1.258 7 C -0.358 4.358 8 H 0.105 0.895 9 C 0.027 3.973 10 S 0.172 5.828 11 C -0.246 4.246 12 C -0.062 4.062 13 C -0.171 4.171 14 C -0.145 4.145 15 C 0.061 3.939 16 F -0.150 7.150 17 C -0.027 4.027 18 C -0.156 4.156 19 O -0.465 6.465 20 H 0.305 0.695 21 H 0.110 0.890 22 H 0.114 0.886 23 H 0.115 0.885 24 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.816 -0.541 1.461 2.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.173 4.173 3 Si 0.767 3.233 4 H -0.181 1.181 5 H -0.196 1.196 6 H -0.182 1.182 7 C -0.392 4.392 8 H 0.123 0.877 9 C -0.094 4.094 10 S 0.432 5.568 11 C -0.361 4.361 12 C -0.084 4.084 13 C -0.192 4.192 14 C -0.166 4.166 15 C 0.040 3.960 16 F -0.129 7.129 17 C -0.036 4.036 18 C -0.206 4.206 19 O -0.269 6.269 20 H 0.119 0.881 21 H 0.128 0.872 22 H 0.132 0.868 23 H 0.133 0.867 24 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -3.186 0.652 0.839 3.358 hybrid contribution 1.765 -0.538 0.513 1.915 sum -1.421 0.114 1.352 1.965 Atomic orbital electron populations 1.68634 1.07830 1.31560 1.31695 1.26420 0.95201 1.03339 0.92320 0.85698 0.79651 0.77264 0.80710 1.18135 1.19556 1.18172 1.19269 0.96254 0.88310 1.35344 0.87707 1.21698 0.95736 0.95730 0.96214 1.84822 1.03213 0.90599 1.78137 1.23306 0.95000 1.03220 1.14564 1.20215 0.96778 0.91822 0.99615 1.20292 0.94826 0.94934 1.09144 1.20485 0.92621 0.97906 1.05629 1.17577 0.77985 0.91230 1.09219 1.91373 1.36755 1.90346 1.94442 1.18131 0.93648 0.91533 1.00305 1.16772 0.82786 0.88886 1.32163 1.84915 1.17293 1.94639 1.30055 0.88149 0.87243 0.86793 0.86699 0.81488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.25 10.58 55.55 0.59 -16.66 14 2 C 0.05 1.09 5.50 -17.27 -0.09 0.99 14 3 Si 0.94 16.48 29.56 -169.99 -5.03 11.46 14 4 H -0.26 -4.52 7.11 56.52 0.40 -4.11 14 5 H -0.27 -4.52 7.11 56.52 0.40 -4.12 14 6 H -0.26 -4.44 7.11 56.52 0.40 -4.04 14 7 C -0.36 -8.79 9.08 -38.38 -0.35 -9.14 14 8 H 0.11 2.49 7.71 -52.48 -0.40 2.09 14 9 C 0.03 0.69 6.12 -39.27 -0.24 0.45 14 10 S 0.17 4.10 20.10 -107.50 -2.16 1.94 14 11 C -0.25 -5.83 6.45 -38.37 -0.25 -6.08 14 12 C -0.06 -1.26 10.05 -39.26 -0.39 -1.65 14 13 C -0.17 -3.22 10.04 -39.56 -0.40 -3.61 14 14 C -0.14 -2.91 9.97 -39.71 -0.40 -3.31 14 15 C 0.06 1.42 7.37 -38.50 -0.28 1.14 14 16 F -0.15 -3.53 16.53 2.25 0.04 -3.49 14 17 C -0.03 -0.69 5.87 -106.97 -0.63 -1.32 14 18 C -0.16 -4.10 6.85 -39.00 -0.27 -4.36 14 19 O -0.46 -11.63 12.50 -18.60 -0.23 -11.86 14 20 H 0.31 6.05 8.30 -40.82 -0.34 5.72 14 21 H 0.11 1.92 8.06 -52.49 -0.42 1.50 14 22 H 0.11 1.73 8.06 -52.49 -0.42 1.30 14 23 H 0.11 1.96 8.06 -52.48 -0.42 1.54 14 24 H 0.34 7.07 9.06 45.56 0.41 7.48 14 LS Contribution 237.14 15.07 3.57 3.57 Total: -1.00 -27.67 237.14 -6.91 -34.58 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -0.39 Total: 7.35 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: -3.30 Total: -26.89 kcal Atomic # 7 Polarization: -17.25 SS G_CDS: 0.59 Total: -16.66 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: -0.23 Total: -11.86 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.04 Total: -3.49 kcal Atomic # 14 Polarization: 16.48 SS G_CDS: -5.03 Total: 11.46 kcal Atomic # 16 Polarization: 4.10 SS G_CDS: -2.16 Total: 1.94 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -27.67 -6.91 -34.58 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307171987.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.221 kcal (2) G-P(sol) polarization free energy of solvation -27.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds