Wall clock time and date at job start Mon Mar 30 2020 05:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30915 * 1 3 3 Si 1.86799 * 120.00229 * 2 1 4 4 H 1.48504 * 109.46702 * 269.99599 * 3 2 1 5 5 H 1.48496 * 109.47346 * 29.99613 * 3 2 1 6 6 H 1.48495 * 109.47192 * 150.00245 * 3 2 1 7 7 C 1.39874 * 119.99962 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00151 * 163.96790 * 7 2 1 9 9 C 1.40525 * 119.99925 * 343.96963 * 7 2 1 10 10 C 1.40413 * 120.37443 * 333.05620 * 9 7 2 11 11 C 1.37500 * 120.16096 * 179.97438 * 10 9 7 12 12 C 1.38484 * 121.05473 * 0.21338 * 11 10 9 13 13 F 1.35099 * 119.30627 * 179.71316 * 12 11 10 14 14 C 1.39857 * 121.38636 * 359.55793 * 12 11 10 15 15 S 1.76051 * 130.54966 * 180.12849 * 14 12 11 16 16 C 1.75504 * 91.56824 * 180.28297 * 15 14 12 17 17 C 1.33139 * 110.64221 * 0.02562 * 16 15 14 18 18 O 1.36122 * 122.15967 * 179.97438 * 17 16 15 19 19 C 1.39679 * 120.04022 * 0.44092 * 14 12 11 20 20 H 0.97006 * 119.99508 * 0.02562 * 1 2 3 21 21 H 1.08003 * 119.91700 * 359.95288 * 10 9 7 22 22 H 1.08004 * 119.47605 * 180.02562 * 11 10 9 23 23 H 1.07994 * 124.68035 * 180.02562 * 16 15 14 24 24 H 0.96705 * 113.99718 * 89.97724 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 2.4908 2.0462 -1.4002 5 1 1.4407 2.6527 0.6999 6 1 3.5407 1.4401 0.7000 7 6 2.0085 -1.2113 0.0005 8 1 3.0570 -1.2297 -0.2578 9 6 1.3468 -2.4045 0.3371 10 6 0.2268 -2.3808 1.1836 11 6 -0.4176 -3.5508 1.5097 12 6 0.0216 -4.7690 1.0189 13 9 -0.6346 -5.8975 1.3668 14 6 1.1284 -4.8553 0.1682 15 16 1.8835 -6.2537 -0.5892 16 6 3.0926 -5.2429 -1.3616 17 6 2.9051 -3.9629 -1.0465 18 8 3.7129 -2.9746 -1.5193 19 6 1.8218 -3.6989 -0.1965 20 1 -0.4850 0.8401 -0.0004 21 1 -0.1292 -1.4412 1.5798 22 1 -1.2784 -3.5197 2.1613 23 1 3.8800 -5.6086 -2.0039 24 1 3.4187 -2.5937 -2.3581 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307176594.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:02 Heat of formation + Delta-G solvation = -57.028337 kcal Electronic energy + Delta-G solvation = -14269.945487 eV Core-core repulsion = 11574.896399 eV Total energy + Delta-G solvation = -2695.049088 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -47.53154 -38.61789 -36.36359 -34.22302 -32.45538 -29.66029 -28.15379 -25.23516 -22.67297 -21.30691 -19.92074 -18.09970 -17.03821 -16.23330 -15.68501 -14.99511 -14.86431 -14.38197 -14.31838 -13.77171 -13.42306 -12.37912 -12.26258 -11.88014 -11.69223 -11.44323 -11.39395 -10.98378 -10.82657 -10.42845 -9.94482 -9.77952 -9.56600 -9.37377 -8.17470 -7.55895 -7.21636 -6.79710 -4.61536 1.66795 2.41203 2.46399 2.85663 2.88107 2.89595 2.96929 3.26260 3.63797 4.18437 5.11060 5.28211 5.70817 5.77244 5.99718 6.31601 6.57722 6.65492 6.79298 6.97300 7.06070 7.29464 7.62551 7.63368 7.80266 8.21264 8.34081 8.42872 8.51820 9.69405 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.028659 B = 0.010077 C = 0.007619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.769875 B = 2777.850393 C = 3674.200755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.068 3.932 3 Si 0.920 3.080 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.255 1.255 7 C -0.411 4.411 8 H 0.104 0.896 9 C 0.151 3.849 10 C -0.170 4.170 11 C -0.084 4.084 12 C -0.039 4.039 13 F -0.168 7.168 14 C -0.094 4.094 15 S 0.047 5.953 16 C -0.316 4.316 17 C 0.169 3.831 18 O -0.484 6.484 19 C -0.203 4.203 20 H 0.291 0.709 21 H 0.131 0.869 22 H 0.109 0.891 23 H 0.153 0.847 24 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.864 -0.262 -1.660 2.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.155 4.155 3 Si 0.743 3.257 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.178 1.178 7 C -0.437 4.437 8 H 0.122 0.878 9 C 0.145 3.855 10 C -0.192 4.192 11 C -0.105 4.105 12 C -0.066 4.066 13 F -0.148 7.148 14 C -0.209 4.209 15 S 0.306 5.694 16 C -0.450 4.450 17 C 0.113 3.887 18 O -0.294 6.294 19 C -0.209 4.209 20 H 0.102 0.898 21 H 0.148 0.852 22 H 0.127 0.873 23 H 0.170 0.830 24 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 1.770 -1.792 -1.226 2.801 hybrid contribution 0.151 2.070 -0.464 2.126 sum 1.921 0.278 -1.690 2.574 Atomic orbital electron populations 1.69857 1.07938 1.30604 1.30135 1.26223 0.94934 1.02317 0.91994 0.86078 0.80705 0.79098 0.79784 1.18937 1.19686 1.17841 1.19963 0.98752 0.90232 1.34784 0.87771 1.18448 0.90211 0.89386 0.87475 1.20931 0.99480 0.96560 1.02193 1.20499 0.99252 0.91208 0.99544 1.16251 0.98109 0.82146 1.10079 1.91293 1.80876 1.50660 1.91930 1.22011 0.99749 0.96376 1.02807 1.83534 1.26047 1.09365 1.50446 1.24686 1.08869 0.96447 1.15002 1.16943 0.89820 0.86692 0.95246 1.84786 1.49672 1.52274 1.42647 1.19053 1.00460 0.93757 1.07654 0.89826 0.85167 0.87287 0.82972 0.76239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.35 11.01 55.54 0.61 -16.74 14 2 C 0.07 1.50 5.15 -17.33 -0.09 1.41 14 3 Si 0.92 16.52 29.59 -169.99 -5.03 11.49 14 4 H -0.26 -4.67 7.11 56.52 0.40 -4.27 14 5 H -0.27 -4.77 7.11 56.52 0.40 -4.37 14 6 H -0.25 -4.64 7.11 56.52 0.40 -4.24 14 7 C -0.41 -9.78 8.49 -38.11 -0.32 -10.11 14 8 H 0.10 2.43 6.31 -52.49 -0.33 2.10 14 9 C 0.15 3.78 5.73 -104.29 -0.60 3.18 14 10 C -0.17 -4.13 8.64 -39.03 -0.34 -4.47 14 11 C -0.08 -1.94 9.92 -39.76 -0.39 -2.33 14 12 C -0.04 -0.94 7.31 -38.89 -0.28 -1.23 14 13 F -0.17 -3.90 17.24 2.25 0.04 -3.86 14 14 C -0.09 -2.26 6.45 -38.44 -0.25 -2.51 14 15 S 0.05 0.96 23.29 -107.50 -2.50 -1.54 14 16 C -0.32 -6.37 11.08 28.96 0.32 -6.05 14 17 C 0.17 3.72 6.68 -40.62 -0.27 3.45 14 18 O -0.48 -9.62 11.41 -20.13 -0.23 -9.85 14 19 C -0.20 -4.98 6.03 -104.69 -0.63 -5.61 14 20 H 0.29 5.91 8.30 -40.82 -0.34 5.57 14 21 H 0.13 3.13 6.26 -52.48 -0.33 2.80 14 22 H 0.11 2.22 8.06 -52.48 -0.42 1.80 14 23 H 0.15 2.63 8.06 -52.49 -0.42 2.20 14 24 H 0.38 5.98 9.07 45.56 0.41 6.39 14 LS Contribution 235.38 15.07 3.55 3.55 Total: -1.00 -26.58 235.38 -6.65 -33.22 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -0.23 Total: 7.99 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: -2.86 Total: -24.25 kcal Atomic # 7 Polarization: -17.35 SS G_CDS: 0.61 Total: -16.74 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: -0.23 Total: -9.85 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.04 Total: -3.86 kcal Atomic # 14 Polarization: 16.52 SS G_CDS: -5.03 Total: 11.49 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.50 Total: -1.54 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -26.58 -6.65 -33.22 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307176594.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.804 kcal (2) G-P(sol) polarization free energy of solvation -26.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds