Wall clock time and date at job start Mon Mar 30 2020 05:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.20758 * 120.00119 * 2 1 4 4 C 1.50703 * 120.00331 * 180.02562 * 2 1 3 5 5 H 1.08997 * 109.47026 * 34.99876 * 4 2 1 6 6 Cl 1.80298 * 109.47387 * 154.99724 * 4 2 1 7 7 C 1.50699 * 109.47091 * 274.99740 * 4 2 1 8 8 C 1.38653 * 119.87754 * 294.72758 * 7 4 2 9 9 C 1.38617 * 120.50388 * 179.72187 * 8 7 4 10 10 C 1.37644 * 120.24404 * 0.55141 * 9 8 7 11 11 C 1.40694 * 119.74201 * 359.72332 * 10 9 8 12 12 C 1.41401 * 120.23872 * 180.02562 * 11 10 9 13 13 H 1.08010 * 119.99504 * 204.36501 * 12 11 10 14 14 C 1.39937 * 120.00309 * 24.36308 * 12 11 10 15 15 N 1.30827 * 119.99883 * 17.87676 * 14 12 11 16 16 Si 1.86801 * 120.00253 * 197.86995 * 14 12 11 17 17 H 1.48491 * 109.47157 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46838 * 120.00280 * 16 14 12 19 19 H 1.48500 * 109.47530 * 239.99985 * 16 14 12 20 20 C 1.37602 * 119.87366 * 114.99816 * 7 4 2 21 21 H 1.09010 * 109.46908 * 239.99736 * 1 2 3 22 22 H 1.08990 * 109.47603 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47065 * 120.00419 * 1 2 3 24 24 H 1.08004 * 119.74569 * 359.97438 * 8 7 4 25 25 H 1.07995 * 119.87800 * 180.25742 * 9 8 7 26 26 H 1.07998 * 120.12385 * 179.70914 * 10 9 8 27 27 H 0.97001 * 120.00321 * 180.02562 * 15 14 12 28 28 H 1.07994 * 120.12677 * 0.02562 * 20 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1107 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 1 1.7132 -2.0404 -0.5903 6 17 3.8952 -1.0549 -0.7189 7 6 2.4045 -1.8026 1.4146 8 6 3.1629 -1.0835 2.3258 9 6 3.2993 -1.5261 3.6322 10 6 2.6911 -2.6930 4.0360 11 6 1.9238 -3.4339 3.1185 12 6 1.2939 -4.6337 3.5221 13 1 1.0511 -5.3891 2.7893 14 6 0.9851 -4.8425 4.8709 15 7 0.9467 -3.8292 5.6976 16 14 0.6276 -6.5679 5.4911 17 1 0.7354 -7.5306 4.3658 18 1 1.6090 -6.9280 6.5459 19 1 -0.7453 -6.6167 6.0551 20 6 1.7875 -2.9718 1.7962 21 1 -0.3633 -0.5139 0.8901 22 1 -0.3634 1.0275 0.0005 23 1 -0.3633 -0.5139 -0.8899 24 1 3.6476 -0.1693 2.0162 25 1 3.8890 -0.9559 4.3347 26 1 2.8025 -3.0385 5.0531 27 1 0.7330 -3.9739 6.6327 28 1 1.2012 -3.5329 1.0836 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307181255.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:01 Heat of formation + Delta-G solvation = -40.535389 kcal Electronic energy + Delta-G solvation = -14241.350110 eV Core-core repulsion = 11668.432809 eV Total energy + Delta-G solvation = -2572.917302 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.32624 -37.58593 -35.49708 -33.91438 -31.80600 -29.97240 -29.59686 -26.25083 -25.30549 -21.01494 -20.81734 -19.27500 -17.18358 -15.70727 -15.52192 -15.38099 -14.97282 -14.55949 -13.75082 -13.64240 -12.77279 -12.51296 -12.32775 -12.13376 -11.89825 -11.70770 -11.29671 -11.19204 -10.76668 -10.58962 -10.48404 -10.24730 -9.85123 -9.52941 -9.35673 -9.20617 -7.63024 -7.48037 -6.86328 -4.46905 1.90489 2.43674 2.70336 2.94540 3.02723 3.07448 3.14121 3.86116 4.24917 4.58357 5.12477 5.22005 5.34374 5.49643 5.57439 5.65597 6.08038 6.22561 6.42297 6.77514 6.92681 7.07519 7.18254 7.38274 7.62497 7.69633 7.89752 7.93887 8.10973 8.49986 8.76865 8.82115 10.08952 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.037248 B = 0.006451 C = 0.006336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.530818 B = 4339.439725 C = 4417.802253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.361 3.639 3 O -0.442 6.442 4 C 0.002 3.998 5 H 0.119 0.881 6 Cl -0.163 7.163 7 C -0.082 4.082 8 C -0.208 4.208 9 C -0.106 4.106 10 C -0.150 4.150 11 C 0.107 3.893 12 C -0.462 4.462 13 H 0.079 0.921 14 C 0.076 3.924 15 N -0.793 5.793 16 Si 0.907 3.093 17 H -0.260 1.260 18 H -0.272 1.272 19 H -0.274 1.274 20 C -0.203 4.203 21 H 0.102 0.898 22 H 0.083 0.917 23 H 0.092 0.908 24 H 0.094 0.906 25 H 0.092 0.908 26 H 0.120 0.880 27 H 0.281 0.719 28 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.842 1.405 -6.053 6.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.235 3.765 3 O -0.314 6.314 4 C -0.042 4.042 5 H 0.137 0.863 6 Cl -0.136 7.136 7 C -0.082 4.082 8 C -0.228 4.228 9 C -0.125 4.125 10 C -0.169 4.169 11 C 0.105 3.895 12 C -0.492 4.492 13 H 0.097 0.903 14 C -0.141 4.141 15 N -0.418 5.418 16 Si 0.732 3.268 17 H -0.183 1.183 18 H -0.197 1.197 19 H -0.200 1.200 20 C -0.222 4.222 21 H 0.121 0.879 22 H 0.102 0.898 23 H 0.110 0.890 24 H 0.112 0.888 25 H 0.110 0.890 26 H 0.138 0.862 27 H 0.092 0.908 28 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.454 2.049 -5.869 6.385 hybrid contribution -0.167 -0.858 0.394 0.959 sum -1.621 1.191 -5.475 5.833 Atomic orbital electron populations 1.22254 0.93140 1.05006 1.05153 1.24577 0.92175 0.89369 0.70377 1.90404 1.71841 1.34361 1.34800 1.23513 0.84811 0.98593 0.97306 0.86328 1.98706 1.31947 1.97644 1.85343 1.18698 1.02246 0.97318 0.89980 1.20273 1.06733 1.01702 0.94091 1.20691 0.99927 0.97107 0.94768 1.21455 0.98838 0.95936 1.00705 1.17542 0.89415 0.92203 0.90373 1.19580 1.34502 1.02144 0.92942 0.90252 1.25904 0.92880 0.98552 0.96808 1.69816 1.34683 1.31751 1.05595 0.86271 0.78571 0.82464 0.79512 1.18338 1.19674 1.19975 1.20790 1.06611 0.96820 0.98017 0.87942 0.89799 0.88970 0.88765 0.88993 0.86173 0.90793 0.88466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.46 10.26 36.00 0.37 -2.09 15 2 C 0.36 5.94 6.17 -29.04 -0.18 5.76 15 3 O -0.44 -8.49 17.00 6.00 0.10 -8.39 15 4 C 0.00 0.04 3.28 -29.03 -0.10 -0.06 15 5 H 0.12 1.71 7.87 -51.93 -0.41 1.30 15 6 Cl -0.16 -2.92 27.48 -51.86 -1.42 -4.34 15 7 C -0.08 -1.71 4.83 -104.70 -0.51 -2.21 15 8 C -0.21 -4.64 8.99 -39.29 -0.35 -4.99 15 9 C -0.11 -2.46 10.02 -39.66 -0.40 -2.86 15 10 C -0.15 -3.75 8.70 -38.87 -0.34 -4.09 15 11 C 0.11 2.69 5.58 -106.82 -0.60 2.09 15 12 C -0.46 -11.58 9.05 -37.74 -0.34 -11.92 15 13 H 0.08 1.91 7.91 -52.48 -0.42 1.49 15 14 C 0.08 1.83 5.14 -17.34 -0.09 1.74 15 15 N -0.79 -19.64 10.95 55.55 0.61 -19.04 15 16 Si 0.91 17.86 29.60 -169.99 -5.03 12.82 15 17 H -0.26 -5.06 7.11 56.52 0.40 -4.66 15 18 H -0.27 -5.30 7.11 56.52 0.40 -4.90 15 19 H -0.27 -5.32 7.11 56.52 0.40 -4.92 15 20 C -0.20 -4.53 9.41 -38.87 -0.37 -4.90 15 21 H 0.10 1.32 8.14 -51.92 -0.42 0.90 15 22 H 0.08 0.96 8.12 -51.93 -0.42 0.54 15 23 H 0.09 0.87 8.14 -51.93 -0.42 0.45 15 24 H 0.09 2.07 7.96 -52.48 -0.42 1.65 15 25 H 0.09 1.92 8.06 -52.49 -0.42 1.50 15 26 H 0.12 3.10 6.16 -52.49 -0.32 2.78 15 27 H 0.28 6.32 8.30 -40.82 -0.34 5.99 15 28 H 0.10 1.97 7.94 -52.49 -0.42 1.55 15 LS Contribution 266.35 15.07 4.01 4.01 Total: -1.00 -27.34 266.35 -7.43 -34.77 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -2.81 Total: 3.67 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: -2.89 Total: -23.51 kcal Atomic # 7 Polarization: -19.64 SS G_CDS: 0.61 Total: -19.04 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.10 Total: -8.39 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.82 kcal Atomic # 17 Polarization: -2.92 SS G_CDS: -1.42 Total: -4.34 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -27.34 -7.43 -34.77 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307181255.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.766 kcal (2) G-P(sol) polarization free energy of solvation -27.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds