Wall clock time and date at job start Mon Mar 30 2020 05:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.20758 * 120.00119 * 2 1 4 4 C 1.50703 * 120.00331 * 180.02562 * 2 1 3 5 5 H 1.08997 * 109.47026 * 34.99876 * 4 2 1 6 6 Cl 1.80298 * 109.47387 * 154.99724 * 4 2 1 7 7 C 1.50699 * 109.47091 * 274.99740 * 4 2 1 8 8 C 1.38653 * 119.87754 * 294.72758 * 7 4 2 9 9 C 1.38617 * 120.50388 * 179.72187 * 8 7 4 10 10 C 1.37644 * 120.24404 * 0.55141 * 9 8 7 11 11 C 1.40694 * 119.74201 * 359.72332 * 10 9 8 12 12 C 1.41401 * 120.23872 * 180.02562 * 11 10 9 13 13 H 1.08010 * 119.99504 * 204.36501 * 12 11 10 14 14 C 1.39937 * 120.00309 * 24.36308 * 12 11 10 15 15 N 1.30827 * 119.99883 * 17.87676 * 14 12 11 16 16 Si 1.86801 * 120.00253 * 197.86995 * 14 12 11 17 17 H 1.48491 * 109.47157 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46838 * 120.00280 * 16 14 12 19 19 H 1.48500 * 109.47530 * 239.99985 * 16 14 12 20 20 C 1.37602 * 119.87366 * 114.99816 * 7 4 2 21 21 H 1.09010 * 109.46908 * 239.99736 * 1 2 3 22 22 H 1.08990 * 109.47603 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47065 * 120.00419 * 1 2 3 24 24 H 1.08004 * 119.74569 * 359.97438 * 8 7 4 25 25 H 1.07995 * 119.87800 * 180.25742 * 9 8 7 26 26 H 1.07998 * 120.12385 * 179.70914 * 10 9 8 27 27 H 0.97001 * 120.00321 * 180.02562 * 15 14 12 28 28 H 1.07994 * 120.12677 * 0.02562 * 20 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1107 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 1 1.7132 -2.0404 -0.5903 6 17 3.8952 -1.0549 -0.7189 7 6 2.4045 -1.8026 1.4146 8 6 3.1629 -1.0835 2.3258 9 6 3.2993 -1.5261 3.6322 10 6 2.6911 -2.6930 4.0360 11 6 1.9238 -3.4339 3.1185 12 6 1.2939 -4.6337 3.5221 13 1 1.0511 -5.3891 2.7893 14 6 0.9851 -4.8425 4.8709 15 7 0.9467 -3.8292 5.6976 16 14 0.6276 -6.5679 5.4911 17 1 0.7354 -7.5306 4.3658 18 1 1.6090 -6.9280 6.5459 19 1 -0.7453 -6.6167 6.0551 20 6 1.7875 -2.9718 1.7962 21 1 -0.3633 -0.5139 0.8901 22 1 -0.3634 1.0275 0.0005 23 1 -0.3633 -0.5139 -0.8899 24 1 3.6476 -0.1693 2.0162 25 1 3.8890 -0.9559 4.3347 26 1 2.8025 -3.0385 5.0531 27 1 0.7330 -3.9739 6.6327 28 1 1.2012 -3.5329 1.0836 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307181255.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:01 Heat of formation + Delta-G solvation = -53.995188 kcal Electronic energy + Delta-G solvation = -14241.933771 eV Core-core repulsion = 11668.432809 eV Total energy + Delta-G solvation = -2573.500962 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.73168 -39.29322 -36.93119 -35.67195 -33.34845 -31.79382 -30.88684 -27.75940 -27.10303 -22.75854 -22.52592 -20.70203 -18.91706 -17.33036 -17.00259 -16.76427 -16.47357 -16.22918 -15.34411 -15.20742 -14.40911 -14.03106 -13.72222 -13.54184 -13.27064 -13.04571 -12.98753 -12.77810 -12.48229 -12.18350 -12.01609 -11.79363 -11.47291 -11.24764 -11.04601 -10.69517 -9.44538 -9.27449 -8.64767 -6.34912 0.45993 0.92764 1.03461 1.37161 1.42295 1.54199 1.57132 2.22080 2.67762 3.05664 3.72753 3.73611 3.96789 4.07852 4.48004 4.58861 4.63712 4.65698 5.00977 5.08903 5.12943 5.24820 5.38771 5.59816 5.89912 6.06047 6.10443 6.26920 6.37324 6.65640 6.92062 6.98515 8.32883 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.037248 B = 0.006451 C = 0.006336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.530818 B = 4339.439725 C = 4417.802253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.361 3.639 3 O -0.474 6.474 4 C -0.002 4.002 5 H 0.154 0.846 6 Cl -0.169 7.169 7 C -0.071 4.071 8 C -0.217 4.217 9 C -0.111 4.111 10 C -0.178 4.178 11 C 0.079 3.921 12 C -0.492 4.492 13 H 0.083 0.917 14 C 0.037 3.963 15 N -0.825 5.825 16 Si 0.979 3.021 17 H -0.255 1.255 18 H -0.269 1.269 19 H -0.267 1.267 20 C -0.204 4.204 21 H 0.099 0.901 22 H 0.093 0.907 23 H 0.129 0.871 24 H 0.096 0.904 25 H 0.105 0.895 26 H 0.103 0.897 27 H 0.288 0.712 28 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.899 0.754 -7.149 7.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.237 3.763 3 O -0.349 6.349 4 C -0.046 4.046 5 H 0.171 0.829 6 Cl -0.142 7.142 7 C -0.072 4.072 8 C -0.237 4.237 9 C -0.130 4.130 10 C -0.198 4.198 11 C 0.077 3.923 12 C -0.521 4.521 13 H 0.101 0.899 14 C -0.178 4.178 15 N -0.451 5.451 16 Si 0.800 3.200 17 H -0.179 1.179 18 H -0.194 1.194 19 H -0.191 1.191 20 C -0.224 4.224 21 H 0.118 0.882 22 H 0.112 0.888 23 H 0.147 0.853 24 H 0.114 0.886 25 H 0.123 0.877 26 H 0.121 0.879 27 H 0.099 0.901 28 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.513 1.406 -6.976 7.546 hybrid contribution 0.187 -0.584 0.687 0.921 sum -2.325 0.821 -6.289 6.755 Atomic orbital electron populations 1.22293 0.89615 1.06292 1.06660 1.25061 0.93924 0.88250 0.69016 1.90403 1.72816 1.35199 1.36438 1.23737 0.84950 1.00345 0.95519 0.82864 1.98709 1.32637 1.97694 1.85147 1.18902 1.00373 0.96260 0.91647 1.20411 1.07214 1.01965 0.94068 1.20885 0.99708 0.96692 0.95667 1.21381 1.00781 0.97316 1.00305 1.17918 0.89840 0.92782 0.91757 1.19856 1.35615 1.02621 0.94002 0.89890 1.26727 0.92223 1.02289 0.96571 1.69873 1.35207 1.33811 1.06172 0.85193 0.78547 0.77396 0.78827 1.17867 1.19439 1.19146 1.21027 1.06644 0.97304 0.97411 0.88218 0.88809 0.85282 0.88600 0.87650 0.87944 0.90138 0.86258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.11 10.26 71.23 0.73 -3.38 15 2 C 0.36 11.03 6.17 29.10 0.18 11.21 15 3 O -0.47 -17.51 17.00 -1.44 -0.02 -17.53 15 4 C 0.00 -0.05 3.28 29.10 0.10 0.05 15 5 H 0.15 3.82 7.87 -2.39 -0.02 3.80 15 6 Cl -0.17 -5.75 27.48 -2.72 -0.07 -5.82 15 7 C -0.07 -2.87 4.83 -19.92 -0.10 -2.97 15 8 C -0.22 -9.56 8.99 22.46 0.20 -9.35 15 9 C -0.11 -5.20 10.02 22.22 0.22 -4.97 15 10 C -0.18 -9.13 8.70 22.73 0.20 -8.93 15 11 C 0.08 4.01 5.58 -21.29 -0.12 3.89 15 12 C -0.49 -24.71 9.05 23.46 0.21 -24.50 15 13 H 0.08 3.96 7.91 -2.91 -0.02 3.93 15 14 C 0.04 1.77 5.14 85.25 0.44 2.21 15 15 N -0.82 -41.43 10.95 21.82 0.24 -41.20 15 16 Si 0.98 36.27 29.60 68.60 2.03 38.30 15 17 H -0.26 -9.17 7.11 99.48 0.71 -8.47 15 18 H -0.27 -9.80 7.11 99.48 0.71 -9.09 15 19 H -0.27 -9.47 7.11 99.48 0.71 -8.76 15 20 C -0.20 -8.90 9.41 22.73 0.21 -8.69 15 21 H 0.10 2.28 8.14 -2.38 -0.02 2.26 15 22 H 0.09 1.86 8.12 -2.39 -0.02 1.84 15 23 H 0.13 1.83 8.14 -2.39 -0.02 1.81 15 24 H 0.10 4.16 7.96 -2.91 -0.02 4.14 15 25 H 0.11 4.47 8.06 -2.91 -0.02 4.45 15 26 H 0.10 5.52 6.16 -2.91 -0.02 5.50 15 27 H 0.29 13.09 8.30 -92.71 -0.77 12.32 15 28 H 0.12 4.56 7.94 -2.91 -0.02 4.54 15 Total: -1.00 -59.01 266.35 5.61 -53.40 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 1.16 Total: 18.28 kcal Atomic # 6 Polarization: -47.71 SS G_CDS: 2.28 Total: -45.43 kcal Atomic # 7 Polarization: -41.43 SS G_CDS: 0.24 Total: -41.20 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -0.02 Total: -17.53 kcal Atomic # 14 Polarization: 36.27 SS G_CDS: 2.03 Total: 38.30 kcal Atomic # 17 Polarization: -5.75 SS G_CDS: -0.07 Total: -5.82 kcal Total: -59.01 5.61 -53.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307181255.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.592 kcal (2) G-P(sol) polarization free energy of solvation -59.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds