Wall clock time and date at job start Mon Mar 30 2020 05:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.20759 * 120.00112 * 2 1 4 4 C 1.50700 * 119.99823 * 180.02562 * 2 1 3 5 5 H 1.08999 * 109.47384 * 154.99729 * 4 2 1 6 6 Cl 1.80301 * 109.46966 * 34.99870 * 4 2 1 7 7 C 1.50698 * 109.46938 * 275.00105 * 4 2 1 8 8 C 1.38656 * 119.87786 * 65.00261 * 7 4 2 9 9 C 1.38608 * 120.50012 * 179.97438 * 8 7 4 10 10 C 1.37638 * 120.25321 * 359.97438 * 9 8 7 11 11 C 1.40700 * 119.74093 * 0.02562 * 10 9 8 12 12 C 1.41395 * 120.24289 * 180.02562 * 11 10 9 13 13 H 1.07991 * 120.00340 * 24.27900 * 12 11 10 14 14 C 1.39949 * 119.99882 * 204.28401 * 12 11 10 15 15 N 1.30823 * 120.00117 * 17.70421 * 14 12 11 16 16 Si 1.86800 * 120.00016 * 197.70968 * 14 12 11 17 17 H 1.48500 * 109.46993 * 59.99878 * 16 14 12 18 18 H 1.48494 * 109.47034 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46914 * 299.99822 * 16 14 12 20 20 C 1.37597 * 119.87145 * 244.71942 * 7 4 2 21 21 H 1.08993 * 109.47395 * 269.99758 * 1 2 3 22 22 H 1.09000 * 109.47360 * 149.98960 * 1 2 3 23 23 H 1.09008 * 109.46799 * 29.99537 * 1 2 3 24 24 H 1.08002 * 119.74727 * 359.95458 * 8 7 4 25 25 H 1.08003 * 119.87527 * 180.02562 * 9 8 7 26 26 H 1.07990 * 120.13255 * 180.02562 * 10 9 8 27 27 H 0.96994 * 120.00561 * 180.02562 * 15 14 12 28 28 H 1.07996 * 120.12801 * 0.02562 * 20 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 1 3.2487 -1.1540 -0.4349 6 17 1.3550 -2.5214 -0.9761 7 6 2.4043 -1.8027 1.4146 8 6 1.2779 -2.1660 2.1369 9 6 1.3953 -2.6258 3.4392 10 6 2.6345 -2.7271 4.0298 11 6 3.7844 -2.3612 3.3064 12 6 5.0627 -2.4615 3.9025 13 1 5.2262 -3.1520 4.7166 14 6 6.1160 -1.6659 3.4375 15 7 5.8646 -0.6057 2.7135 16 14 7.8807 -2.1179 3.8507 17 1 8.1853 -3.4675 3.3112 18 1 8.8014 -1.1234 3.2438 19 1 8.0583 -2.1225 5.3250 20 6 3.6536 -1.9002 1.9831 21 1 -0.3634 0.0000 1.0276 22 1 -0.3634 -0.8899 -0.5140 23 1 -0.3633 0.8901 -0.5138 24 1 0.3016 -2.0899 1.6814 25 1 0.5112 -2.9065 3.9924 26 1 2.7237 -3.0860 5.0444 27 1 6.5946 -0.0544 2.3909 28 1 4.5300 -1.6206 1.4173 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307181256.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:04 Heat of formation + Delta-G solvation = -40.779269 kcal Electronic energy + Delta-G solvation = -14399.095012 eV Core-core repulsion = 11826.167135 eV Total energy + Delta-G solvation = -2572.927877 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.30738 -37.60287 -35.66965 -33.84084 -31.87995 -29.76976 -29.58699 -26.33679 -25.34296 -21.14982 -20.65530 -19.13888 -17.26806 -15.70520 -15.60690 -15.32367 -14.88671 -14.62280 -13.75836 -13.61660 -12.84212 -12.55628 -12.32543 -12.00807 -11.85402 -11.71393 -11.21575 -11.14264 -10.83629 -10.62255 -10.56077 -10.29350 -9.77906 -9.67487 -9.29666 -9.15233 -7.59258 -7.52331 -6.84732 -4.46025 1.82396 2.50409 2.76986 2.96581 3.03557 3.05308 3.16733 3.87386 4.23604 4.57221 5.13000 5.29413 5.46741 5.58090 5.67072 5.79891 6.11093 6.21208 6.38858 6.71204 6.94597 7.07338 7.19434 7.37647 7.63919 7.71518 7.85574 7.89904 8.13126 8.46211 8.77274 8.81306 10.09945 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.028707 B = 0.007831 C = 0.007192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.147844 B = 3574.704112 C = 3892.155587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.371 3.629 3 O -0.446 6.446 4 C 0.009 3.991 5 H 0.120 0.880 6 Cl -0.172 7.172 7 C -0.090 4.090 8 C -0.221 4.221 9 C -0.093 4.093 10 C -0.216 4.216 11 C 0.108 3.892 12 C -0.461 4.461 13 H 0.080 0.920 14 C 0.075 3.925 15 N -0.790 5.790 16 Si 0.909 3.091 17 H -0.263 1.263 18 H -0.278 1.278 19 H -0.265 1.265 20 C -0.134 4.134 21 H 0.101 0.899 22 H 0.093 0.907 23 H 0.083 0.917 24 H 0.095 0.905 25 H 0.092 0.908 26 H 0.095 0.905 27 H 0.284 0.716 28 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.525 -1.061 -4.388 7.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C 0.246 3.754 3 O -0.318 6.318 4 C -0.035 4.035 5 H 0.138 0.862 6 Cl -0.146 7.146 7 C -0.091 4.091 8 C -0.241 4.241 9 C -0.112 4.112 10 C -0.236 4.236 11 C 0.105 3.895 12 C -0.490 4.490 13 H 0.098 0.902 14 C -0.143 4.143 15 N -0.415 5.415 16 Si 0.734 3.266 17 H -0.187 1.187 18 H -0.203 1.203 19 H -0.189 1.189 20 C -0.154 4.154 21 H 0.119 0.881 22 H 0.112 0.888 23 H 0.102 0.898 24 H 0.113 0.887 25 H 0.110 0.890 26 H 0.113 0.887 27 H 0.095 0.905 28 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.143 -0.370 -4.586 6.901 hybrid contribution 0.776 -0.268 0.166 0.837 sum -4.368 -0.638 -4.419 6.246 Atomic orbital electron populations 1.22347 0.93906 1.04921 1.05211 1.24485 0.92340 0.88951 0.69638 1.90436 1.72100 1.33783 1.35527 1.23652 0.97670 0.87923 0.94261 0.86161 1.98684 1.78884 1.62350 1.74670 1.18858 0.95490 1.04130 0.90604 1.20165 0.95947 1.11934 0.96039 1.20495 0.96273 0.99759 0.94648 1.21063 0.92393 1.11191 0.98945 1.17548 0.92564 0.88805 0.90563 1.19553 0.93416 1.19757 1.16299 0.90206 1.25941 1.01741 0.93277 0.93346 1.69790 1.35010 1.09966 1.26739 0.86342 0.80970 0.79523 0.79804 1.18722 1.20253 1.18937 1.21218 0.94620 1.03812 0.95732 0.88100 0.88836 0.89842 0.88718 0.88964 0.88714 0.90521 0.86013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.84 9.20 36.01 0.33 -2.51 15 2 C 0.37 6.67 6.19 -29.03 -0.18 6.49 15 3 O -0.45 -9.39 17.84 6.00 0.11 -9.29 15 4 C 0.01 0.17 3.36 -29.04 -0.10 0.07 15 5 H 0.12 2.28 7.87 -51.93 -0.41 1.87 15 6 Cl -0.17 -2.79 26.24 -51.86 -1.36 -4.15 15 7 C -0.09 -1.97 4.83 -104.70 -0.51 -2.48 15 8 C -0.22 -4.59 8.84 -39.29 -0.35 -4.94 15 9 C -0.09 -2.00 10.02 -39.66 -0.40 -2.39 15 10 C -0.22 -5.11 9.80 -38.87 -0.38 -5.49 15 11 C 0.11 2.78 5.57 -106.82 -0.60 2.19 15 12 C -0.46 -11.90 9.05 -37.74 -0.34 -12.24 15 13 H 0.08 1.97 7.91 -52.49 -0.41 1.55 15 14 C 0.08 1.86 5.14 -17.34 -0.09 1.77 15 15 N -0.79 -20.21 10.95 55.55 0.61 -19.60 15 16 Si 0.91 18.33 29.59 -169.99 -5.03 13.30 15 17 H -0.26 -5.25 7.11 56.52 0.40 -4.85 15 18 H -0.28 -5.48 7.11 56.52 0.40 -5.08 15 19 H -0.26 -5.27 7.11 56.52 0.40 -4.87 15 20 C -0.13 -3.35 8.31 -38.87 -0.32 -3.68 15 21 H 0.10 1.34 7.87 -51.93 -0.41 0.93 15 22 H 0.09 1.16 6.30 -51.93 -0.33 0.84 15 23 H 0.08 1.00 8.14 -51.92 -0.42 0.57 15 24 H 0.09 1.71 6.95 -52.49 -0.36 1.35 15 25 H 0.09 1.69 8.06 -52.48 -0.42 1.27 15 26 H 0.09 2.10 8.06 -52.49 -0.42 1.68 15 27 H 0.28 6.67 8.30 -40.82 -0.34 6.33 15 28 H 0.12 3.16 6.05 -52.49 -0.32 2.85 15 LS Contribution 261.76 15.07 3.94 3.94 Total: -1.00 -27.25 261.76 -7.30 -34.55 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -2.64 Total: 4.45 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: -2.93 Total: -23.20 kcal Atomic # 7 Polarization: -20.21 SS G_CDS: 0.61 Total: -19.60 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.11 Total: -9.29 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.03 Total: 13.30 kcal Atomic # 17 Polarization: -2.79 SS G_CDS: -1.36 Total: -4.15 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -27.25 -7.30 -34.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307181256.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.229 kcal (2) G-P(sol) polarization free energy of solvation -27.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds