Wall clock time and date at job start Mon Mar 30 2020 05:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.20759 * 120.00112 * 2 1 4 4 C 1.50700 * 119.99823 * 180.02562 * 2 1 3 5 5 H 1.08999 * 109.47384 * 154.99729 * 4 2 1 6 6 Cl 1.80301 * 109.46966 * 34.99870 * 4 2 1 7 7 C 1.50698 * 109.46938 * 275.00105 * 4 2 1 8 8 C 1.38656 * 119.87786 * 65.00261 * 7 4 2 9 9 C 1.38608 * 120.50012 * 179.97438 * 8 7 4 10 10 C 1.37638 * 120.25321 * 359.97438 * 9 8 7 11 11 C 1.40700 * 119.74093 * 0.02562 * 10 9 8 12 12 C 1.41395 * 120.24289 * 180.02562 * 11 10 9 13 13 H 1.07991 * 120.00340 * 24.27900 * 12 11 10 14 14 C 1.39949 * 119.99882 * 204.28401 * 12 11 10 15 15 N 1.30823 * 120.00117 * 17.70421 * 14 12 11 16 16 Si 1.86800 * 120.00016 * 197.70968 * 14 12 11 17 17 H 1.48500 * 109.46993 * 59.99878 * 16 14 12 18 18 H 1.48494 * 109.47034 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46914 * 299.99822 * 16 14 12 20 20 C 1.37597 * 119.87145 * 244.71942 * 7 4 2 21 21 H 1.08993 * 109.47395 * 269.99758 * 1 2 3 22 22 H 1.09000 * 109.47360 * 149.98960 * 1 2 3 23 23 H 1.09008 * 109.46799 * 29.99537 * 1 2 3 24 24 H 1.08002 * 119.74727 * 359.95458 * 8 7 4 25 25 H 1.08003 * 119.87527 * 180.02562 * 9 8 7 26 26 H 1.07990 * 120.13255 * 180.02562 * 10 9 8 27 27 H 0.96994 * 120.00561 * 180.02562 * 15 14 12 28 28 H 1.07996 * 120.12801 * 0.02562 * 20 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 1 3.2487 -1.1540 -0.4349 6 17 1.3550 -2.5214 -0.9761 7 6 2.4043 -1.8027 1.4146 8 6 1.2779 -2.1660 2.1369 9 6 1.3953 -2.6258 3.4392 10 6 2.6345 -2.7271 4.0298 11 6 3.7844 -2.3612 3.3064 12 6 5.0627 -2.4615 3.9025 13 1 5.2262 -3.1520 4.7166 14 6 6.1160 -1.6659 3.4375 15 7 5.8646 -0.6057 2.7135 16 14 7.8807 -2.1179 3.8507 17 1 8.1853 -3.4675 3.3112 18 1 8.8014 -1.1234 3.2438 19 1 8.0583 -2.1225 5.3250 20 6 3.6536 -1.9002 1.9831 21 1 -0.3634 0.0000 1.0276 22 1 -0.3634 -0.8899 -0.5140 23 1 -0.3633 0.8901 -0.5138 24 1 0.3016 -2.0899 1.6814 25 1 0.5112 -2.9065 3.9924 26 1 2.7237 -3.0860 5.0444 27 1 6.5946 -0.0544 2.3909 28 1 4.5300 -1.6206 1.4173 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307181256.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:03 Heat of formation + Delta-G solvation = -54.636342 kcal Electronic energy + Delta-G solvation = -14399.695900 eV Core-core repulsion = 11826.167135 eV Total energy + Delta-G solvation = -2573.528765 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.83340 -39.33481 -37.13452 -35.64246 -33.51637 -31.45524 -31.05281 -27.89812 -27.18267 -22.94600 -22.31348 -20.67643 -19.06905 -17.42066 -17.05804 -16.80759 -16.53911 -16.27938 -15.34580 -15.27263 -14.49023 -14.12100 -13.90829 -13.48972 -13.19675 -13.18854 -12.89552 -12.81377 -12.55133 -12.20103 -12.03868 -11.85444 -11.50382 -11.32655 -11.06815 -10.68099 -9.37578 -9.33766 -8.66891 -6.38247 0.30485 0.92379 1.06070 1.31251 1.36788 1.48087 1.53573 2.18577 2.64256 2.97282 3.66076 3.69255 3.81306 4.19938 4.51466 4.60277 4.62953 4.70389 4.92666 5.08132 5.11573 5.24836 5.38746 5.57410 5.92429 6.04036 6.05607 6.25619 6.32770 6.60452 6.89890 6.96386 8.29429 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.028707 B = 0.007831 C = 0.007192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.147844 B = 3574.704112 C = 3892.155587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.373 3.627 3 O -0.484 6.484 4 C 0.004 3.996 5 H 0.107 0.893 6 Cl -0.142 7.142 7 C -0.089 4.089 8 C -0.211 4.211 9 C -0.093 4.093 10 C -0.232 4.232 11 C 0.074 3.926 12 C -0.499 4.499 13 H 0.078 0.922 14 C 0.035 3.965 15 N -0.827 5.827 16 Si 0.980 3.020 17 H -0.259 1.259 18 H -0.270 1.270 19 H -0.258 1.258 20 C -0.165 4.165 21 H 0.113 0.887 22 H 0.110 0.890 23 H 0.105 0.895 24 H 0.131 0.869 25 H 0.130 0.870 26 H 0.101 0.899 27 H 0.287 0.713 28 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.272 -1.554 -4.714 8.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.250 3.750 3 O -0.360 6.360 4 C -0.040 4.040 5 H 0.125 0.875 6 Cl -0.115 7.115 7 C -0.089 4.089 8 C -0.230 4.230 9 C -0.111 4.111 10 C -0.252 4.252 11 C 0.072 3.928 12 C -0.529 4.529 13 H 0.097 0.903 14 C -0.179 4.179 15 N -0.453 5.453 16 Si 0.801 3.199 17 H -0.184 1.184 18 H -0.195 1.195 19 H -0.182 1.182 20 C -0.185 4.185 21 H 0.132 0.868 22 H 0.128 0.872 23 H 0.124 0.876 24 H 0.149 0.851 25 H 0.148 0.852 26 H 0.119 0.881 27 H 0.098 0.902 28 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.918 -0.883 -4.912 8.530 hybrid contribution 1.130 -0.170 0.198 1.160 sum -5.788 -1.053 -4.714 7.539 Atomic orbital electron populations 1.22388 0.89829 1.06914 1.06452 1.25002 0.94331 0.87619 0.68047 1.90432 1.73281 1.34797 1.37465 1.23494 0.98238 0.89376 0.92924 0.87521 1.98682 1.77983 1.61200 1.73629 1.19102 0.94799 1.02889 0.92142 1.20607 0.96950 1.09673 0.95737 1.20928 0.96630 0.98465 0.95078 1.21303 0.92949 1.11485 0.99433 1.17935 0.93611 0.89874 0.91361 1.19812 0.94671 1.20957 1.17420 0.90350 1.26759 1.05652 0.92649 0.92884 1.69869 1.36276 1.11009 1.28121 0.85277 0.75649 0.79225 0.79763 1.18373 1.19469 1.18212 1.21151 0.95395 1.06116 0.95868 0.86846 0.87174 0.87642 0.85132 0.85170 0.88085 0.90211 0.88259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.73 9.20 71.24 0.66 -4.07 15 2 C 0.37 12.84 6.19 29.10 0.18 13.02 15 3 O -0.48 -20.33 17.84 -1.45 -0.03 -20.35 15 4 C 0.00 0.16 3.36 29.10 0.10 0.25 15 5 H 0.11 4.16 7.87 -2.39 -0.02 4.14 15 6 Cl -0.14 -4.24 26.24 -2.72 -0.07 -4.31 15 7 C -0.09 -3.84 4.83 -19.92 -0.10 -3.93 15 8 C -0.21 -8.17 8.84 22.46 0.20 -7.98 15 9 C -0.09 -3.75 10.02 22.22 0.22 -3.52 15 10 C -0.23 -10.94 9.80 22.73 0.22 -10.72 15 11 C 0.07 3.96 5.57 -21.29 -0.12 3.84 15 12 C -0.50 -26.77 9.05 23.46 0.21 -26.56 15 13 H 0.08 4.03 7.91 -2.92 -0.02 4.00 15 14 C 0.04 1.80 5.14 85.26 0.44 2.23 15 15 N -0.83 -44.12 10.95 21.83 0.24 -43.88 15 16 Si 0.98 38.47 29.59 68.60 2.03 40.50 15 17 H -0.26 -9.93 7.11 99.48 0.71 -9.22 15 18 H -0.27 -10.15 7.11 99.48 0.71 -9.44 15 19 H -0.26 -9.74 7.11 99.48 0.71 -9.03 15 20 C -0.17 -8.54 8.31 22.73 0.19 -8.35 15 21 H 0.11 2.51 7.87 -2.39 -0.02 2.49 15 22 H 0.11 2.24 6.30 -2.39 -0.02 2.23 15 23 H 0.10 2.10 8.14 -2.38 -0.02 2.08 15 24 H 0.13 4.10 6.95 -2.91 -0.02 4.08 15 25 H 0.13 4.22 8.06 -2.91 -0.02 4.20 15 26 H 0.10 4.49 8.06 -2.92 -0.02 4.46 15 27 H 0.29 14.07 8.30 -92.71 -0.77 13.30 15 28 H 0.10 5.48 6.05 -2.91 -0.02 5.46 15 Total: -1.00 -60.61 261.76 5.55 -55.06 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: 1.17 Total: 18.76 kcal Atomic # 6 Polarization: -47.98 SS G_CDS: 2.20 Total: -45.78 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: 0.24 Total: -43.88 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.03 Total: -20.35 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 2.03 Total: 40.50 kcal Atomic # 17 Polarization: -4.24 SS G_CDS: -0.07 Total: -4.31 kcal Total: -60.61 5.55 -55.06 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307181256.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.427 kcal (2) G-P(sol) polarization free energy of solvation -60.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds