Wall clock time and date at job start Mon Mar 30 2020 05:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30870 * 1 3 3 Si 1.86798 * 119.99865 * 2 1 4 4 H 1.48503 * 109.46923 * 239.99772 * 3 2 1 5 5 H 1.48497 * 109.47354 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47353 * 119.99729 * 3 2 1 7 7 C 1.39920 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00429 * 195.35420 * 7 2 1 9 9 C 1.40565 * 120.00246 * 15.35462 * 7 2 1 10 10 C 1.40267 * 120.36105 * 25.83991 * 9 7 2 11 11 C 1.38040 * 120.09182 * 179.97438 * 10 9 7 12 12 O 1.35915 * 119.51294 * 179.97438 * 11 10 9 13 13 C 1.38712 * 120.97286 * 0.02562 * 11 10 9 14 14 C 1.39502 * 121.40042 * 359.97438 * 13 11 10 15 15 S 1.76072 * 130.55079 * 180.32841 * 14 13 11 16 16 C 1.75503 * 91.54248 * 180.02562 * 15 14 13 17 17 C 1.32916 * 110.67525 * 359.65427 * 16 15 14 18 18 F 1.35091 * 122.11535 * 180.24584 * 17 16 15 19 19 C 1.39838 * 120.10953 * 0.02562 * 14 13 11 20 20 H 0.97005 * 119.99859 * 0.02562 * 1 2 3 21 21 H 1.08000 * 119.95544 * 0.02849 * 10 9 7 22 22 H 0.96702 * 113.99959 * 270.02146 * 12 11 10 23 23 H 1.07998 * 119.29785 * 180.02562 * 13 11 10 24 24 H 1.08000 * 124.66235 * 179.91374 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.0964 1.6964 -1.2125 5 1 1.2777 2.7465 -0.0006 6 1 3.0964 1.6965 1.2126 7 6 2.0083 -1.2117 0.0005 8 1 3.0594 -1.2284 0.2482 9 6 1.3432 -2.4075 -0.3213 10 6 0.2021 -2.3868 -1.1368 11 6 -0.4464 -3.5645 -1.4497 12 8 -1.5513 -3.5307 -2.2405 13 6 0.0123 -4.7818 -0.9682 14 6 1.1418 -4.8620 -0.1534 15 16 1.9302 -6.2572 0.5761 16 6 3.1482 -5.2380 1.3230 17 6 2.9444 -3.9610 1.0155 18 9 3.7521 -2.9762 1.4657 19 6 1.8386 -3.7011 0.1961 20 1 -0.4850 0.8401 -0.0004 21 1 -0.1690 -1.4482 -1.5211 22 1 -2.3806 -3.4302 -1.7534 23 1 -0.5157 -5.6867 -1.2303 24 1 3.9550 -5.5992 1.9435 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307205681.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:57 Heat of formation + Delta-G solvation = -57.758628 kcal Electronic energy + Delta-G solvation = -14254.934031 eV Core-core repulsion = 11559.853275 eV Total energy + Delta-G solvation = -2695.080756 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -47.95341 -38.42101 -36.34250 -34.54102 -32.43129 -29.94308 -27.62395 -25.53471 -22.56881 -21.41678 -19.70120 -18.38703 -16.78848 -16.45284 -15.67633 -15.18616 -15.01197 -14.74884 -14.19646 -13.72078 -13.13648 -12.69216 -12.21873 -12.00981 -11.63422 -11.51325 -11.32579 -11.24139 -10.66109 -10.32094 -10.20592 -9.81207 -9.45922 -9.31826 -8.31831 -7.41032 -7.18414 -6.83593 -4.70646 1.62603 2.42942 2.50063 2.81508 2.88234 2.91679 2.98623 3.20272 3.65171 4.15948 5.07182 5.32997 5.46388 5.73325 6.11339 6.36562 6.64560 6.65671 6.70472 6.94828 7.00754 7.43255 7.51009 7.59157 7.76871 8.06058 8.35829 8.39161 8.69049 9.69384 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.023328 B = 0.011160 C = 0.007708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.994398 B = 2508.363369 C = 3631.602162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.761 5.761 2 C 0.070 3.930 3 Si 0.922 3.078 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.259 1.259 7 C -0.414 4.414 8 H 0.097 0.903 9 C 0.166 3.834 10 C -0.209 4.209 11 C 0.160 3.840 12 O -0.511 6.511 13 C -0.256 4.256 14 C -0.042 4.042 15 S 0.045 5.955 16 C -0.338 4.338 17 C 0.169 3.831 18 F -0.134 7.134 19 C -0.239 4.239 20 H 0.291 0.709 21 H 0.134 0.866 22 H 0.380 0.620 23 H 0.102 0.898 24 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.260 -1.840 0.726 1.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.382 5.382 2 C -0.153 4.153 3 Si 0.745 3.255 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.183 1.183 7 C -0.440 4.440 8 H 0.115 0.885 9 C 0.160 3.840 10 C -0.231 4.231 11 C 0.113 3.887 12 O -0.321 6.321 13 C -0.283 4.283 14 C -0.157 4.157 15 S 0.305 5.695 16 C -0.471 4.471 17 C 0.139 3.861 18 F -0.113 7.113 19 C -0.245 4.245 20 H 0.103 0.897 21 H 0.151 0.849 22 H 0.234 0.766 23 H 0.120 0.880 24 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.322 -3.245 0.375 3.282 hybrid contribution 0.348 2.306 0.589 2.405 sum 0.670 -0.939 0.964 1.504 Atomic orbital electron populations 1.69816 1.07940 1.30705 1.29787 1.26180 0.94990 1.02320 0.91790 0.86097 0.80142 0.78539 0.80738 1.18143 1.19751 1.18266 1.19886 0.98279 0.90498 1.35347 0.88520 1.18186 0.89781 0.89076 0.86936 1.21274 1.01083 0.96903 1.03888 1.18059 0.87946 0.92129 0.90561 1.84698 1.15812 1.96035 1.35509 1.19631 1.01691 0.96872 1.10105 1.21713 0.98746 0.94337 1.00892 1.83390 1.24680 1.09228 1.52244 1.24259 1.09801 0.95388 1.17692 1.16250 0.89670 0.84138 0.96089 1.91404 1.71321 1.61305 1.87249 1.18931 1.00893 0.95068 1.09583 0.89730 0.84886 0.76617 0.87958 0.82632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.82 10.89 55.55 0.61 -17.21 14 2 C 0.07 1.62 5.18 -17.33 -0.09 1.53 14 3 Si 0.92 17.27 29.59 -169.99 -5.03 12.24 14 4 H -0.26 -4.80 7.11 56.52 0.40 -4.39 14 5 H -0.27 -4.89 7.11 56.52 0.40 -4.49 14 6 H -0.26 -4.84 7.11 56.52 0.40 -4.44 14 7 C -0.41 -10.41 8.59 -38.08 -0.33 -10.74 14 8 H 0.10 2.40 6.42 -52.49 -0.34 2.06 14 9 C 0.17 4.31 5.75 -104.32 -0.60 3.71 14 10 C -0.21 -5.23 8.57 -38.89 -0.33 -5.57 14 11 C 0.16 3.69 6.66 -39.48 -0.26 3.42 14 12 O -0.51 -10.22 13.47 -19.47 -0.26 -10.48 14 13 C -0.26 -5.81 9.94 -38.94 -0.39 -6.20 14 14 C -0.04 -0.97 6.48 -38.51 -0.25 -1.22 14 15 S 0.05 0.89 23.29 -107.50 -2.50 -1.62 14 16 C -0.34 -6.88 11.11 28.89 0.32 -6.56 14 17 C 0.17 3.94 7.27 -40.74 -0.30 3.64 14 18 F -0.13 -3.10 15.37 2.25 0.03 -3.06 14 19 C -0.24 -5.97 6.03 -104.67 -0.63 -6.60 14 20 H 0.29 6.10 8.30 -40.82 -0.34 5.76 14 21 H 0.13 3.37 6.14 -52.49 -0.32 3.05 14 22 H 0.38 5.69 9.06 45.56 0.41 6.10 14 23 H 0.10 2.11 8.06 -52.49 -0.42 1.69 14 24 H 0.16 2.71 8.06 -52.49 -0.42 2.29 14 LS Contribution 235.53 15.07 3.55 3.55 Total: -1.00 -26.86 235.53 -6.69 -33.55 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -0.23 Total: 7.63 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: -2.86 Total: -24.59 kcal Atomic # 7 Polarization: -17.82 SS G_CDS: 0.61 Total: -17.21 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: -0.26 Total: -10.48 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.03 Total: -3.06 kcal Atomic # 14 Polarization: 17.27 SS G_CDS: -5.03 Total: 12.24 kcal Atomic # 16 Polarization: 0.89 SS G_CDS: -2.50 Total: -1.62 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -26.86 -6.69 -33.55 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307205681.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.212 kcal (2) G-P(sol) polarization free energy of solvation -26.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds