Wall clock time and date at job start Mon Mar 30 2020 05:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30926 * 1 3 3 Si 1.86801 * 120.00573 * 2 1 4 4 H 1.48501 * 109.46869 * 240.00063 * 3 2 1 5 5 H 1.48502 * 109.46997 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47501 * 119.99618 * 3 2 1 7 7 C 1.39802 * 119.99524 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00075 * 198.03001 * 7 2 1 9 9 C 1.40983 * 120.00094 * 18.04111 * 7 2 1 10 10 C 1.40477 * 120.17244 * 24.77350 * 9 7 2 11 11 C 1.38889 * 120.07582 * 179.97438 * 10 9 7 12 12 S 1.76061 * 130.40844 * 180.30858 * 11 10 9 13 13 C 1.75472 * 91.56179 * 180.02562 * 12 11 10 14 14 C 1.32778 * 110.80684 * 359.64941 * 13 12 11 15 15 F 1.35095 * 122.08509 * 180.24500 * 14 13 12 16 16 C 1.40307 * 120.18651 * 0.02562 * 11 10 9 17 17 C 1.42443 * 118.98502 * 359.97438 * 16 11 10 18 18 O 1.35828 * 119.61677 * 179.97438 * 17 16 11 19 19 C 1.35715 * 120.75895 * 0.04583 * 17 16 11 20 20 H 0.97005 * 119.99197 * 0.02562 * 1 2 3 21 21 H 1.07998 * 119.95882 * 359.96768 * 10 9 7 22 22 H 1.08000 * 124.59920 * 179.90984 * 13 12 11 23 23 H 0.96701 * 113.99825 * 90.00519 * 18 17 16 24 24 H 1.07998 * 119.82770 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2434 1.6177 0.0000 4 1 3.0972 1.6962 -1.2125 5 1 1.2785 2.7465 -0.0006 6 1 3.0971 1.6964 1.2125 7 6 2.0082 -1.2108 0.0005 8 1 3.0484 -1.2337 0.2900 9 6 1.3552 -2.4018 -0.3770 10 6 0.2332 -2.3549 -1.2211 11 6 -0.4083 -3.5295 -1.5922 12 16 -1.8098 -3.7869 -2.6263 13 6 -1.7235 -5.5238 -2.3923 14 6 -0.7057 -5.8432 -1.6017 15 9 -0.4260 -7.1236 -1.2740 16 6 0.0606 -4.7670 -1.1259 17 6 1.1995 -4.7960 -0.2709 18 8 1.6639 -5.9869 0.1884 19 6 1.8249 -3.6473 0.0912 20 1 -0.4849 0.8402 -0.0004 21 1 -0.1310 -1.4042 -1.5816 22 1 -2.4034 -6.2367 -2.8349 23 1 2.3263 -6.3979 -0.3839 24 1 2.6870 -3.6867 0.7405 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307263330.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:26 Heat of formation + Delta-G solvation = -75.401897 kcal Electronic energy + Delta-G solvation = -14128.883122 eV Core-core repulsion = 11433.037296 eV Total energy + Delta-G solvation = -2695.845825 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.76623 -40.46684 -37.79549 -36.63088 -34.43864 -30.85201 -30.24884 -27.35726 -24.13839 -23.32451 -21.51950 -20.20534 -18.75003 -17.86270 -17.40733 -17.14945 -16.66024 -16.42336 -15.97016 -15.40032 -15.05386 -14.44721 -13.93070 -13.76128 -13.37082 -13.18518 -12.81512 -12.68528 -12.33327 -12.05347 -11.79780 -11.67747 -11.24042 -10.95025 -10.12376 -9.40645 -8.85141 -8.40616 -6.49546 -0.08322 0.70017 0.79607 1.15928 1.24859 1.41324 1.54080 1.60963 2.15131 2.48168 3.35910 3.49577 3.61710 3.99245 4.37664 4.67457 4.79272 4.90765 5.06106 5.18832 5.30180 5.56118 5.71548 5.78881 5.92657 6.34596 6.62424 6.65014 6.95809 8.10496 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.034308 B = 0.008364 C = 0.006861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.933153 B = 3346.711860 C = 4080.189196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.034 3.966 3 Si 0.992 3.008 4 H -0.256 1.256 5 H -0.267 1.267 6 H -0.254 1.254 7 C -0.452 4.452 8 H 0.099 0.901 9 C 0.113 3.887 10 C -0.187 4.187 11 C -0.077 4.077 12 S 0.089 5.911 13 C -0.305 4.305 14 C 0.132 3.868 15 F -0.137 7.137 16 C -0.289 4.289 17 C 0.171 3.829 18 O -0.507 6.507 19 C -0.234 4.234 20 H 0.299 0.701 21 H 0.117 0.883 22 H 0.191 0.809 23 H 0.401 0.599 24 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.926 -1.480 -3.416 3.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.186 4.186 3 Si 0.811 3.189 4 H -0.180 1.180 5 H -0.191 1.191 6 H -0.178 1.178 7 C -0.479 4.479 8 H 0.117 0.883 9 C 0.107 3.893 10 C -0.214 4.214 11 C -0.192 4.192 12 S 0.348 5.652 13 C -0.439 4.439 14 C 0.101 3.899 15 F -0.116 7.116 16 C -0.295 4.295 17 C 0.125 3.875 18 O -0.319 6.319 19 C -0.253 4.253 20 H 0.110 0.890 21 H 0.135 0.865 22 H 0.208 0.792 23 H 0.259 0.741 24 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.679 -0.478 -3.756 3.847 hybrid contribution 1.380 -0.761 0.627 1.696 sum 0.701 -1.240 -3.130 3.438 Atomic orbital electron populations 1.69900 1.09408 1.31959 1.30616 1.26991 0.95537 1.05207 0.90862 0.85075 0.78739 0.74498 0.80550 1.17977 1.19110 1.17820 1.20033 0.99185 0.91672 1.37034 0.88321 1.17669 0.90760 0.92685 0.88193 1.20555 1.01434 0.94601 1.04769 1.22255 0.99541 0.96164 1.01221 1.83427 1.30114 0.99062 1.52602 1.24802 1.06426 1.00599 1.12080 1.16328 0.96495 0.78148 0.98977 1.91403 1.93486 1.35204 1.91514 1.18096 1.05769 0.92301 1.13347 1.17842 0.91865 0.85249 0.92553 1.84660 1.62136 1.33896 1.51225 1.21022 1.04939 0.92010 1.07372 0.89011 0.86543 0.79213 0.74124 0.85817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.89 10.97 21.80 0.24 -37.65 14 2 C 0.03 1.51 5.12 85.21 0.44 1.94 14 3 Si 0.99 33.42 29.60 68.60 2.03 35.45 14 4 H -0.26 -8.42 7.11 99.48 0.71 -7.72 14 5 H -0.27 -8.59 7.11 99.48 0.71 -7.88 14 6 H -0.25 -8.24 7.11 99.48 0.71 -7.53 14 7 C -0.45 -21.71 9.02 23.32 0.21 -21.50 14 8 H 0.10 4.38 7.91 -2.91 -0.02 4.36 14 9 C 0.11 5.74 5.56 -21.36 -0.12 5.62 14 10 C -0.19 -9.51 8.72 22.97 0.20 -9.31 14 11 C -0.08 -3.67 6.46 22.93 0.15 -3.52 14 12 S 0.09 3.46 23.29 -56.49 -1.32 2.14 14 13 C -0.31 -11.40 11.09 66.64 0.74 -10.66 14 14 C 0.13 5.59 7.31 21.63 0.16 5.75 14 15 F -0.14 -5.56 16.58 44.97 0.75 -4.81 14 16 C -0.29 -13.63 5.90 -21.20 -0.13 -13.76 14 17 C 0.17 7.88 6.71 22.73 0.15 8.03 14 18 O -0.51 -20.10 12.71 -91.62 -1.16 -21.27 14 19 C -0.23 -11.03 9.59 22.39 0.21 -10.82 14 20 H 0.30 12.71 8.30 -92.70 -0.77 11.94 14 21 H 0.12 6.07 6.15 -2.91 -0.02 6.06 14 22 H 0.19 5.67 8.06 -2.91 -0.02 5.64 14 23 H 0.40 11.65 9.06 -74.06 -0.67 10.98 14 24 H 0.12 5.35 8.06 -2.91 -0.02 5.33 14 Total: -1.00 -56.32 237.48 3.14 -53.18 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: 0.59 Total: 21.17 kcal Atomic # 6 Polarization: -50.23 SS G_CDS: 2.02 Total: -48.22 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.24 Total: -37.65 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -1.16 Total: -21.27 kcal Atomic # 9 Polarization: -5.56 SS G_CDS: 0.75 Total: -4.81 kcal Atomic # 14 Polarization: 33.42 SS G_CDS: 2.03 Total: 35.45 kcal Atomic # 16 Polarization: 3.46 SS G_CDS: -1.32 Total: 2.14 kcal Total: -56.32 3.14 -53.18 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307263330.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.222 kcal (2) G-P(sol) polarization free energy of solvation -56.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds