Wall clock time and date at job start Mon Mar 30 2020 05:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30939 * 1 3 3 Si 1.86804 * 119.99881 * 2 1 4 4 H 1.48495 * 109.47201 * 239.99744 * 3 2 1 5 5 H 1.48497 * 109.47079 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46857 * 120.00105 * 3 2 1 7 7 C 1.39781 * 120.00133 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00041 * 163.06356 * 7 2 1 9 9 C 1.40949 * 120.00124 * 343.05503 * 7 2 1 10 10 C 1.40508 * 120.17469 * 334.38465 * 9 7 2 11 11 C 1.38802 * 120.09715 * 180.02562 * 10 9 7 12 12 S 1.76058 * 130.38450 * 179.97438 * 11 10 9 13 13 C 1.75469 * 91.56118 * 180.02562 * 12 11 10 14 14 F 1.35105 * 124.61865 * 179.97438 * 13 12 11 15 15 C 1.33025 * 110.77093 * 359.97438 * 13 12 11 16 16 C 1.40271 * 115.80837 * 359.77222 * 15 13 12 17 17 C 1.42479 * 128.58690 * 179.63277 * 16 15 13 18 18 O 1.35853 * 119.62187 * 0.58733 * 17 16 15 19 19 C 1.35708 * 120.75586 * 180.31276 * 17 16 15 20 20 H 0.97001 * 120.00323 * 0.02562 * 1 2 3 21 21 H 1.07999 * 119.95170 * 0.04322 * 10 9 7 22 22 H 1.08006 * 122.09999 * 180.02562 * 15 13 12 23 23 H 0.96696 * 113.99880 * 269.72725 * 18 17 16 24 24 H 1.08000 * 119.83710 * 180.25928 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3094 0.0000 0.0000 3 14 2.2434 1.6178 0.0000 4 1 3.0972 1.6965 -1.2124 5 1 1.2784 2.7465 0.0006 6 1 3.0971 1.6964 1.2125 7 6 2.0083 -1.2105 -0.0005 8 1 3.0532 -1.2307 -0.2730 9 6 1.3495 -2.4049 0.3547 10 6 0.2240 -2.3676 1.1949 11 6 -0.4232 -3.5448 1.5441 12 16 -1.8340 -3.8119 2.5630 13 6 -1.7500 -5.5458 2.3072 14 9 -2.6057 -6.4431 2.8438 15 6 -0.7291 -5.8566 1.5130 16 6 0.0395 -4.7762 1.0553 17 6 1.1849 -4.7963 0.2083 18 8 1.6473 -5.9816 -0.2679 19 6 1.8161 -3.6443 -0.1328 20 1 -0.4851 0.8400 -0.0004 21 1 -0.1383 -1.4216 1.5694 22 1 -0.5084 -6.8766 1.2346 23 1 2.3064 -6.4035 0.3001 24 1 2.6806 -3.6764 -0.7793 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307299299.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:29 Heat of formation + Delta-G solvation = -57.993662 kcal Electronic energy + Delta-G solvation = -13935.070756 eV Core-core repulsion = 11239.979808 eV Total energy + Delta-G solvation = -2695.090948 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.18874 -38.89225 -36.13961 -35.06082 -32.76015 -28.99398 -28.43582 -25.25967 -22.59542 -21.48264 -19.99843 -18.55460 -17.27192 -16.20940 -15.62970 -15.40230 -15.10378 -15.01601 -14.27441 -13.70005 -13.64467 -13.01139 -12.13255 -12.06989 -11.80560 -11.72209 -11.32108 -10.91217 -10.56067 -10.33103 -10.14821 -9.95205 -9.54427 -9.21455 -8.55574 -7.50413 -7.13306 -6.82410 -4.66951 1.56032 2.09291 2.49178 2.75663 2.80276 2.90277 2.92424 3.24951 3.66746 4.21314 5.01431 5.13987 5.24941 5.97356 6.19025 6.41626 6.53177 6.64738 6.79539 6.90099 7.00653 7.34895 7.46559 7.49479 7.74223 8.10390 8.31474 8.43633 8.57589 9.78259 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.033275 B = 0.007962 C = 0.006545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.271775 B = 3515.736735 C = 4276.901177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.070 3.930 3 Si 0.918 3.082 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.427 4.427 8 H 0.090 0.910 9 C 0.135 3.865 10 C -0.158 4.158 11 C -0.059 4.059 12 S 0.032 5.968 13 C -0.082 4.082 14 F -0.125 7.125 15 C -0.085 4.085 16 C -0.226 4.226 17 C 0.166 3.834 18 O -0.508 6.508 19 C -0.217 4.217 20 H 0.290 0.710 21 H 0.128 0.872 22 H 0.131 0.869 23 H 0.378 0.622 24 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.848 -2.006 2.264 3.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.152 4.152 3 Si 0.742 3.258 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.456 4.456 8 H 0.108 0.892 9 C 0.129 3.871 10 C -0.185 4.185 11 C -0.174 4.174 12 S 0.289 5.711 13 C -0.214 4.214 14 F -0.104 7.104 15 C -0.117 4.117 16 C -0.231 4.231 17 C 0.120 3.880 18 O -0.317 6.317 19 C -0.237 4.237 20 H 0.101 0.899 21 H 0.146 0.854 22 H 0.149 0.851 23 H 0.232 0.768 24 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.184 -0.965 2.638 2.815 hybrid contribution 1.233 -0.545 -0.376 1.400 sum 1.417 -1.510 2.263 3.067 Atomic orbital electron populations 1.69848 1.07810 1.30523 1.30734 1.26086 0.94934 1.02080 0.92124 0.86171 0.80116 0.79156 0.80392 1.18560 1.19915 1.18361 1.19660 0.98185 0.90844 1.36882 0.89237 1.17300 0.90347 0.91695 0.87804 1.20611 1.00049 0.94635 1.03226 1.22025 0.97482 0.97244 1.00653 1.83885 1.32723 0.98692 1.55782 1.21023 0.98836 0.90831 1.10693 1.91369 1.68699 1.65115 1.85217 1.19791 0.94455 1.00119 0.97316 1.17449 1.03658 0.91402 1.10631 1.17770 0.92176 0.84462 0.93584 1.84731 1.61595 1.35258 1.50126 1.20894 1.04107 0.92251 1.06455 0.89850 0.85430 0.85118 0.76828 0.86992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.04 10.96 55.54 0.61 -17.44 14 2 C 0.07 1.56 5.14 -17.36 -0.09 1.47 14 3 Si 0.92 16.59 29.59 -169.99 -5.03 11.56 14 4 H -0.26 -4.65 7.11 56.52 0.40 -4.25 14 5 H -0.27 -4.87 7.11 56.52 0.40 -4.47 14 6 H -0.26 -4.65 7.11 56.52 0.40 -4.25 14 7 C -0.43 -10.05 9.02 -37.98 -0.34 -10.39 14 8 H 0.09 1.95 7.90 -52.49 -0.41 1.54 14 9 C 0.14 3.29 5.56 -106.92 -0.59 2.70 14 10 C -0.16 -3.91 8.70 -38.52 -0.34 -4.24 14 11 C -0.06 -1.39 6.45 -38.58 -0.25 -1.64 14 12 S 0.03 0.67 23.29 -107.50 -2.50 -1.84 14 13 C -0.08 -1.72 8.28 28.92 0.24 -1.48 14 14 F -0.12 -2.47 17.32 2.25 0.04 -2.44 14 15 C -0.09 -1.79 9.98 -40.63 -0.41 -2.19 14 16 C -0.23 -5.15 5.90 -106.71 -0.63 -5.78 14 17 C 0.17 3.63 6.71 -38.86 -0.26 3.37 14 18 O -0.51 -9.46 13.33 -19.28 -0.26 -9.71 14 19 C -0.22 -4.91 9.59 -39.39 -0.38 -5.29 14 20 H 0.29 6.18 8.30 -40.82 -0.34 5.84 14 21 H 0.13 3.22 6.18 -52.49 -0.32 2.89 14 22 H 0.13 2.44 8.06 -52.48 -0.42 2.02 14 23 H 0.38 5.01 9.06 45.56 0.41 5.42 14 24 H 0.11 2.33 8.06 -52.49 -0.42 1.91 14 LS Contribution 238.69 15.07 3.60 3.60 Total: -1.00 -26.19 238.69 -6.90 -33.09 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -0.31 Total: 6.64 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: -3.04 Total: -23.46 kcal Atomic # 7 Polarization: -18.04 SS G_CDS: 0.61 Total: -17.44 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: -0.26 Total: -9.71 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.04 Total: -2.44 kcal Atomic # 14 Polarization: 16.59 SS G_CDS: -5.03 Total: 11.56 kcal Atomic # 16 Polarization: 0.67 SS G_CDS: -2.50 Total: -1.84 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -26.19 -6.90 -33.09 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307299299.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.903 kcal (2) G-P(sol) polarization free energy of solvation -26.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds