Wall clock time and date at job start Mon Mar 30 2020 05:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30939 * 1 3 3 Si 1.86804 * 119.99881 * 2 1 4 4 H 1.48495 * 109.47201 * 239.99744 * 3 2 1 5 5 H 1.48497 * 109.47079 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46857 * 120.00105 * 3 2 1 7 7 C 1.39781 * 120.00133 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00041 * 163.06356 * 7 2 1 9 9 C 1.40949 * 120.00124 * 343.05503 * 7 2 1 10 10 C 1.40508 * 120.17469 * 334.38465 * 9 7 2 11 11 C 1.38802 * 120.09715 * 180.02562 * 10 9 7 12 12 S 1.76058 * 130.38450 * 179.97438 * 11 10 9 13 13 C 1.75469 * 91.56118 * 180.02562 * 12 11 10 14 14 F 1.35105 * 124.61865 * 179.97438 * 13 12 11 15 15 C 1.33025 * 110.77093 * 359.97438 * 13 12 11 16 16 C 1.40271 * 115.80837 * 359.77222 * 15 13 12 17 17 C 1.42479 * 128.58690 * 179.63277 * 16 15 13 18 18 O 1.35853 * 119.62187 * 0.58733 * 17 16 15 19 19 C 1.35708 * 120.75586 * 180.31276 * 17 16 15 20 20 H 0.97001 * 120.00323 * 0.02562 * 1 2 3 21 21 H 1.07999 * 119.95170 * 0.04322 * 10 9 7 22 22 H 1.08006 * 122.09999 * 180.02562 * 15 13 12 23 23 H 0.96696 * 113.99880 * 269.72725 * 18 17 16 24 24 H 1.08000 * 119.83710 * 180.25928 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3094 0.0000 0.0000 3 14 2.2434 1.6178 0.0000 4 1 3.0972 1.6965 -1.2124 5 1 1.2784 2.7465 0.0006 6 1 3.0971 1.6964 1.2125 7 6 2.0083 -1.2105 -0.0005 8 1 3.0532 -1.2307 -0.2730 9 6 1.3495 -2.4049 0.3547 10 6 0.2240 -2.3676 1.1949 11 6 -0.4232 -3.5448 1.5441 12 16 -1.8340 -3.8119 2.5630 13 6 -1.7500 -5.5458 2.3072 14 9 -2.6057 -6.4431 2.8438 15 6 -0.7291 -5.8566 1.5130 16 6 0.0395 -4.7762 1.0553 17 6 1.1849 -4.7963 0.2083 18 8 1.6473 -5.9816 -0.2679 19 6 1.8161 -3.6443 -0.1328 20 1 -0.4851 0.8400 -0.0004 21 1 -0.1383 -1.4216 1.5694 22 1 -0.5084 -6.8766 1.2346 23 1 2.3064 -6.4035 0.3001 24 1 2.6806 -3.6764 -0.7793 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307299299.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:28 Heat of formation + Delta-G solvation = -73.159526 kcal Electronic energy + Delta-G solvation = -13935.728397 eV Core-core repulsion = 11239.979808 eV Total energy + Delta-G solvation = -2695.748589 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.81577 -40.57363 -37.73567 -36.76140 -34.46829 -30.73751 -30.14941 -26.99149 -24.31852 -23.19974 -21.69293 -20.19582 -18.97758 -17.85103 -17.27148 -17.06728 -16.76049 -16.66387 -15.86670 -15.35088 -15.31430 -14.60055 -13.83317 -13.76051 -13.46414 -13.34968 -12.82153 -12.54531 -12.07998 -12.03088 -11.80957 -11.61031 -11.20543 -10.89740 -10.27370 -9.25481 -8.81618 -8.53322 -6.45722 -0.13046 0.40419 0.73321 1.02729 1.27142 1.42087 1.54614 1.64922 2.16001 2.53274 3.39927 3.46118 3.55564 4.34514 4.48786 4.72026 4.79337 4.92348 5.09550 5.20389 5.28293 5.65710 5.72759 5.79920 5.94951 6.37169 6.66317 6.67544 7.03718 8.12992 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.033275 B = 0.007962 C = 0.006545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.271775 B = 3515.736735 C = 4276.901177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.032 3.968 3 Si 0.991 3.009 4 H -0.254 1.254 5 H -0.269 1.269 6 H -0.256 1.256 7 C -0.453 4.453 8 H 0.100 0.900 9 C 0.113 3.887 10 C -0.184 4.184 11 C -0.078 4.078 12 S 0.050 5.950 13 C -0.082 4.082 14 F -0.116 7.116 15 C -0.086 4.086 16 C -0.242 4.242 17 C 0.176 3.824 18 O -0.506 6.506 19 C -0.231 4.231 20 H 0.297 0.703 21 H 0.112 0.888 22 H 0.156 0.844 23 H 0.405 0.595 24 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.449 -2.340 2.190 4.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.187 4.187 3 Si 0.811 3.189 4 H -0.177 1.177 5 H -0.194 1.194 6 H -0.180 1.180 7 C -0.481 4.481 8 H 0.118 0.882 9 C 0.107 3.893 10 C -0.211 4.211 11 C -0.194 4.194 12 S 0.308 5.692 13 C -0.214 4.214 14 F -0.096 7.096 15 C -0.117 4.117 16 C -0.247 4.247 17 C 0.129 3.871 18 O -0.319 6.319 19 C -0.251 4.251 20 H 0.108 0.892 21 H 0.130 0.870 22 H 0.174 0.826 23 H 0.263 0.737 24 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.794 -1.333 2.575 3.006 hybrid contribution 1.002 -0.570 -0.339 1.201 sum 1.796 -1.903 2.236 3.442 Atomic orbital electron populations 1.69906 1.09390 1.31794 1.31277 1.26976 0.95522 1.05222 0.90957 0.85089 0.78700 0.74602 0.80553 1.17735 1.19376 1.18007 1.20008 0.98836 0.91514 1.37705 0.88236 1.17632 0.90651 0.92922 0.88113 1.20524 1.01305 0.94462 1.04761 1.22284 0.98380 0.97468 1.01231 1.83761 1.31472 0.99017 1.54959 1.21105 0.98934 0.90825 1.10558 1.91392 1.68403 1.64713 1.85062 1.19941 0.93965 1.00862 0.96936 1.17762 1.04303 0.91609 1.11029 1.17748 0.91615 0.85312 0.92390 1.84652 1.62491 1.33956 1.50780 1.21053 1.04885 0.92088 1.07102 0.89196 0.87003 0.82602 0.73718 0.85657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.33 10.96 21.80 0.24 -38.09 14 2 C 0.03 1.44 5.14 85.20 0.44 1.88 14 3 Si 0.99 33.50 29.59 68.60 2.03 35.53 14 4 H -0.25 -8.20 7.11 99.48 0.71 -7.49 14 5 H -0.27 -8.79 7.11 99.48 0.71 -8.08 14 6 H -0.26 -8.45 7.11 99.48 0.71 -7.75 14 7 C -0.45 -21.47 9.02 23.31 0.21 -21.26 14 8 H 0.10 4.34 7.90 -2.91 -0.02 4.31 14 9 C 0.11 5.61 5.56 -21.35 -0.12 5.49 14 10 C -0.18 -9.27 8.70 22.96 0.20 -9.08 14 11 C -0.08 -3.71 6.45 22.92 0.15 -3.56 14 12 S 0.05 2.08 23.29 -56.49 -1.32 0.77 14 13 C -0.08 -3.30 8.28 66.66 0.55 -2.74 14 14 F -0.12 -4.36 17.32 44.97 0.78 -3.58 14 15 C -0.09 -3.42 9.98 21.60 0.22 -3.20 14 16 C -0.24 -10.77 5.90 -21.22 -0.13 -10.89 14 17 C 0.18 7.47 6.71 22.74 0.15 7.62 14 18 O -0.51 -17.56 13.33 -91.90 -1.22 -18.79 14 19 C -0.23 -10.40 9.59 22.39 0.21 -10.18 14 20 H 0.30 12.80 8.30 -92.71 -0.77 12.03 14 21 H 0.11 5.87 6.18 -2.91 -0.02 5.86 14 22 H 0.16 5.33 8.06 -2.91 -0.02 5.31 14 23 H 0.40 9.47 9.06 -74.06 -0.67 8.80 14 24 H 0.13 5.13 8.06 -2.91 -0.02 5.10 14 Total: -1.00 -54.97 238.69 2.99 -51.98 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 0.59 Total: 18.10 kcal Atomic # 6 Polarization: -47.81 SS G_CDS: 1.89 Total: -45.93 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.24 Total: -38.09 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -1.22 Total: -18.79 kcal Atomic # 9 Polarization: -4.36 SS G_CDS: 0.78 Total: -3.58 kcal Atomic # 14 Polarization: 33.50 SS G_CDS: 2.03 Total: 35.53 kcal Atomic # 16 Polarization: 2.08 SS G_CDS: -1.32 Total: 0.77 kcal Total: -54.97 2.99 -51.98 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307299299.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.175 kcal (2) G-P(sol) polarization free energy of solvation -54.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds