Wall clock time and date at job start Mon Mar 30 2020 05:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30914 * 1 3 3 Si 1.86797 * 119.99867 * 2 1 4 4 H 1.48502 * 109.46884 * 272.30520 * 3 2 1 5 5 H 1.48499 * 109.47589 * 32.30703 * 3 2 1 6 6 H 1.48498 * 109.47037 * 152.31160 * 3 2 1 7 7 C 1.39880 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00130 * 343.29664 * 7 2 1 9 9 C 1.40877 * 119.99751 * 163.56848 * 7 2 1 10 10 C 1.40418 * 120.22781 * 331.00197 * 9 7 2 11 11 C 1.38775 * 120.07886 * 179.69307 * 10 9 7 12 12 S 1.76072 * 130.38690 * 180.23353 * 11 10 9 13 13 C 1.75469 * 91.55859 * 180.29888 * 12 11 10 14 14 C 1.32424 * 110.87558 * 359.97438 * 13 12 11 15 15 C 1.40411 * 120.26341 * 0.56254 * 11 10 9 16 16 C 1.41937 * 119.08041 * 359.73453 * 15 11 10 17 17 F 1.35095 * 119.60626 * 180.02562 * 16 15 11 18 18 C 1.35946 * 120.78873 * 359.97438 * 16 15 11 19 19 O 1.35916 * 119.88086 * 180.02562 * 18 16 15 20 20 H 0.97002 * 120.00132 * 0.02562 * 1 2 3 21 21 H 1.07993 * 119.95625 * 359.97438 * 10 9 7 22 22 H 1.08001 * 124.56152 * 180.02562 * 13 12 11 23 23 H 1.08000 * 122.05751 * 180.02562 * 14 13 12 24 24 H 0.96706 * 113.99764 * 264.55395 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.4418 2.0745 -1.3990 5 1 1.4659 2.6381 0.7483 6 1 3.5642 1.4266 0.6506 7 6 2.0085 -1.2114 0.0005 8 1 1.5027 -2.1269 0.2698 9 6 3.3741 -1.2364 -0.3446 10 6 3.8965 -0.2822 -1.2324 11 6 5.2435 -0.3058 -1.5653 12 16 6.1746 0.7445 -2.6283 13 6 7.6442 -0.1619 -2.3157 14 6 7.4132 -1.1610 -1.4779 15 6 6.0884 -1.2894 -1.0266 16 6 5.5462 -2.2518 -0.1353 17 9 6.3496 -3.2026 0.3897 18 6 4.2283 -2.2276 0.1973 19 8 3.7286 -3.1579 1.0530 20 1 -0.4850 0.8400 -0.0004 21 1 3.2501 0.4738 -1.6531 22 1 8.6077 0.0652 -2.7477 23 1 8.1947 -1.8359 -1.1613 24 1 3.3268 -3.9203 0.6142 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307325339.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:58 Heat of formation + Delta-G solvation = -56.946529 kcal Electronic energy + Delta-G solvation = -14342.347033 eV Core-core repulsion = 11647.301493 eV Total energy + Delta-G solvation = -2695.045541 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.12228 -38.75388 -36.60888 -34.69221 -33.03208 -29.67672 -28.71306 -25.37791 -22.46262 -22.02601 -20.04419 -18.19280 -17.36069 -16.87887 -15.96751 -15.26833 -15.20000 -14.97242 -14.23240 -13.54571 -13.35739 -12.97790 -12.67559 -12.54791 -11.98100 -11.75773 -11.47215 -10.96999 -10.84345 -10.35890 -9.99480 -9.88630 -9.76103 -9.26666 -8.62451 -7.72152 -7.38333 -6.96485 -4.83893 1.48833 2.05480 2.32472 2.73088 2.83020 2.99792 3.05303 3.19124 3.73115 4.05828 4.80247 4.94232 5.29910 5.58804 5.78827 6.06705 6.14063 6.49321 6.54023 6.69205 6.75663 6.99491 7.20183 7.23437 7.52731 7.84783 7.99490 8.27892 8.57980 9.59799 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.023434 B = 0.012462 C = 0.008550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.558219 B = 2246.254654 C = 3274.183054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.080 3.920 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.285 1.285 6 H -0.239 1.239 7 C -0.386 4.386 8 H 0.104 0.896 9 C 0.095 3.905 10 C -0.239 4.239 11 C -0.035 4.035 12 S 0.019 5.981 13 C -0.260 4.260 14 C -0.065 4.065 15 C -0.238 4.238 16 C 0.144 3.856 17 F -0.148 7.148 18 C -0.002 4.002 19 O -0.481 6.481 20 H 0.295 0.705 21 H 0.115 0.885 22 H 0.151 0.849 23 H 0.126 0.874 24 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.892 0.521 -2.605 6.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.144 4.144 3 Si 0.741 3.259 4 H -0.188 1.188 5 H -0.212 1.212 6 H -0.162 1.162 7 C -0.413 4.413 8 H 0.122 0.878 9 C 0.087 3.913 10 C -0.266 4.266 11 C -0.150 4.150 12 S 0.279 5.721 13 C -0.392 4.392 14 C -0.095 4.095 15 C -0.244 4.244 16 C 0.122 3.878 17 F -0.126 7.126 18 C -0.049 4.049 19 O -0.288 6.288 20 H 0.106 0.894 21 H 0.133 0.867 22 H 0.169 0.831 23 H 0.143 0.857 24 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 5.617 2.189 -3.022 6.744 hybrid contribution 0.509 -1.016 0.530 1.254 sum 6.126 1.173 -2.492 6.717 Atomic orbital electron populations 1.69674 1.08231 1.31541 1.30059 1.26357 0.94982 1.02429 0.90668 0.86209 0.81312 0.78646 0.79764 1.18825 1.21159 1.16154 1.19501 0.91786 0.96586 1.33385 0.87836 1.17614 0.93084 0.90699 0.89865 1.20118 0.92315 1.06498 1.07669 1.22010 0.96891 0.97129 0.98999 1.83750 1.01252 1.35525 1.51611 1.24469 1.00946 1.03668 1.10158 1.19605 0.95212 0.97745 0.96924 1.17455 0.94077 1.02981 1.09857 1.17438 0.87997 0.87523 0.94837 1.91363 1.73704 1.62543 1.85021 1.17902 0.89473 0.97298 1.00237 1.84865 1.78514 1.32673 1.32731 0.89373 0.86720 0.83110 0.85660 0.77788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.61 13.93 55.54 0.77 -17.84 14 2 C 0.08 1.91 5.43 -17.33 -0.09 1.82 14 3 Si 0.92 19.67 24.45 -169.99 -4.16 15.51 14 4 H -0.26 -5.47 6.57 56.52 0.37 -5.10 14 5 H -0.28 -5.81 7.11 56.52 0.40 -5.41 14 6 H -0.24 -5.41 6.87 56.52 0.39 -5.03 14 7 C -0.39 -9.53 9.20 -37.97 -0.35 -9.88 14 8 H 0.10 2.60 7.86 -52.49 -0.41 2.19 14 9 C 0.09 2.28 5.15 -106.79 -0.55 1.73 14 10 C -0.24 -5.63 7.17 -38.56 -0.28 -5.90 14 11 C -0.03 -0.78 6.46 -38.57 -0.25 -1.03 14 12 S 0.02 0.36 23.29 -107.50 -2.50 -2.15 14 13 C -0.26 -4.54 11.08 28.81 0.32 -4.22 14 14 C -0.07 -1.25 10.04 -40.63 -0.41 -1.66 14 15 C -0.24 -5.24 5.89 -106.80 -0.63 -5.87 14 16 C 0.14 3.25 7.31 -38.99 -0.28 2.96 14 17 F -0.15 -3.15 16.94 2.25 0.04 -3.11 14 18 C 0.00 -0.05 6.66 -39.11 -0.26 -0.31 14 19 O -0.48 -10.20 12.60 -19.48 -0.25 -10.45 14 20 H 0.30 6.37 8.30 -40.82 -0.34 6.03 14 21 H 0.12 2.65 4.38 -52.49 -0.23 2.43 14 22 H 0.15 2.13 8.06 -52.49 -0.42 1.71 14 23 H 0.13 2.11 8.06 -52.49 -0.42 1.68 14 24 H 0.37 6.10 9.06 45.56 0.41 6.51 14 LS Contribution 231.87 15.07 3.49 3.49 Total: -1.00 -26.26 231.87 -5.63 -31.90 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -0.25 Total: 5.01 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: -2.78 Total: -22.37 kcal Atomic # 7 Polarization: -18.61 SS G_CDS: 0.77 Total: -17.84 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: -0.25 Total: -10.45 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.04 Total: -3.11 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -4.16 Total: 15.51 kcal Atomic # 16 Polarization: 0.36 SS G_CDS: -2.50 Total: -2.15 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -26.26 -5.63 -31.90 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307325339.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.050 kcal (2) G-P(sol) polarization free energy of solvation -26.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds