Wall clock time and date at job start Mon Mar 30 2020 05:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30914 * 1 3 3 Si 1.86797 * 119.99867 * 2 1 4 4 H 1.48502 * 109.46884 * 272.30520 * 3 2 1 5 5 H 1.48499 * 109.47589 * 32.30703 * 3 2 1 6 6 H 1.48498 * 109.47037 * 152.31160 * 3 2 1 7 7 C 1.39880 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00130 * 343.29664 * 7 2 1 9 9 C 1.40877 * 119.99751 * 163.56848 * 7 2 1 10 10 C 1.40418 * 120.22781 * 331.00197 * 9 7 2 11 11 C 1.38775 * 120.07886 * 179.69307 * 10 9 7 12 12 S 1.76072 * 130.38690 * 180.23353 * 11 10 9 13 13 C 1.75469 * 91.55859 * 180.29888 * 12 11 10 14 14 C 1.32424 * 110.87558 * 359.97438 * 13 12 11 15 15 C 1.40411 * 120.26341 * 0.56254 * 11 10 9 16 16 C 1.41937 * 119.08041 * 359.73453 * 15 11 10 17 17 F 1.35095 * 119.60626 * 180.02562 * 16 15 11 18 18 C 1.35946 * 120.78873 * 359.97438 * 16 15 11 19 19 O 1.35916 * 119.88086 * 180.02562 * 18 16 15 20 20 H 0.97002 * 120.00132 * 0.02562 * 1 2 3 21 21 H 1.07993 * 119.95625 * 359.97438 * 10 9 7 22 22 H 1.08001 * 124.56152 * 180.02562 * 13 12 11 23 23 H 1.08000 * 122.05751 * 180.02562 * 14 13 12 24 24 H 0.96706 * 113.99764 * 264.55395 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.4418 2.0745 -1.3990 5 1 1.4659 2.6381 0.7483 6 1 3.5642 1.4266 0.6506 7 6 2.0085 -1.2114 0.0005 8 1 1.5027 -2.1269 0.2698 9 6 3.3741 -1.2364 -0.3446 10 6 3.8965 -0.2822 -1.2324 11 6 5.2435 -0.3058 -1.5653 12 16 6.1746 0.7445 -2.6283 13 6 7.6442 -0.1619 -2.3157 14 6 7.4132 -1.1610 -1.4779 15 6 6.0884 -1.2894 -1.0266 16 6 5.5462 -2.2518 -0.1353 17 9 6.3496 -3.2026 0.3897 18 6 4.2283 -2.2276 0.1973 19 8 3.7286 -3.1579 1.0530 20 1 -0.4850 0.8400 -0.0004 21 1 3.2501 0.4738 -1.6531 22 1 8.6077 0.0652 -2.7477 23 1 8.1947 -1.8359 -1.1613 24 1 3.3268 -3.9203 0.6142 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307325339.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:58 Heat of formation + Delta-G solvation = -73.757856 kcal Electronic energy + Delta-G solvation = -14343.076027 eV Core-core repulsion = 11647.301493 eV Total energy + Delta-G solvation = -2695.774534 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.83797 -40.47206 -38.26811 -36.41006 -34.72807 -31.39008 -30.44121 -27.08718 -24.13844 -23.76322 -21.66055 -19.95537 -19.04470 -18.53309 -17.68333 -17.00376 -16.91037 -16.65402 -15.91251 -15.16153 -15.00221 -14.65954 -14.37648 -14.22251 -13.63969 -13.43080 -13.14939 -12.64356 -12.56901 -11.95110 -11.73104 -11.54376 -11.46196 -10.97434 -10.28202 -9.42105 -9.14434 -8.57766 -6.65414 -0.15442 0.27716 0.71696 1.14684 1.20002 1.27180 1.37577 1.51180 2.01494 2.32866 3.03138 3.23277 3.58607 4.04260 4.24781 4.37120 4.58114 4.84590 4.93502 4.99464 5.04608 5.37652 5.46198 5.58086 5.81800 6.01819 6.25077 6.48508 6.96048 7.90340 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.023434 B = 0.012462 C = 0.008550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.558219 B = 2246.254654 C = 3274.183054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.056 3.944 3 Si 0.954 3.046 4 H -0.252 1.252 5 H -0.267 1.267 6 H -0.259 1.259 7 C -0.424 4.424 8 H 0.083 0.917 9 C 0.084 3.916 10 C -0.248 4.248 11 C -0.069 4.069 12 S 0.053 5.947 13 C -0.223 4.223 14 C -0.093 4.093 15 C -0.231 4.231 16 C 0.131 3.869 17 F -0.142 7.142 18 C -0.010 4.010 19 O -0.490 6.490 20 H 0.305 0.695 21 H 0.114 0.886 22 H 0.197 0.803 23 H 0.151 0.849 24 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.582 1.493 -3.760 9.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.165 4.165 3 Si 0.778 3.222 4 H -0.177 1.177 5 H -0.193 1.193 6 H -0.183 1.183 7 C -0.451 4.451 8 H 0.101 0.899 9 C 0.077 3.923 10 C -0.275 4.275 11 C -0.185 4.185 12 S 0.313 5.687 13 C -0.356 4.356 14 C -0.122 4.122 15 C -0.238 4.238 16 C 0.109 3.891 17 F -0.120 7.120 18 C -0.057 4.057 19 O -0.299 6.299 20 H 0.116 0.884 21 H 0.132 0.868 22 H 0.214 0.786 23 H 0.169 0.831 24 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 8.283 3.156 -4.188 9.803 hybrid contribution -0.011 -1.368 0.778 1.573 sum 8.272 1.789 -3.410 9.124 Atomic orbital electron populations 1.69670 1.08831 1.32591 1.32009 1.26790 0.95435 1.03959 0.90307 0.85629 0.79546 0.76876 0.80170 1.17729 1.19314 1.18338 1.19407 0.92530 0.96489 1.36703 0.89939 1.17744 0.93032 0.91413 0.90128 1.20179 0.93173 1.06483 1.07620 1.22371 0.97032 0.98599 1.00450 1.83715 1.01069 1.34257 1.49627 1.25103 1.01946 1.01193 1.07312 1.19823 0.94455 0.99593 0.98337 1.17919 0.95586 1.01823 1.08471 1.17519 0.87892 0.88169 0.95488 1.91369 1.73355 1.62323 1.84992 1.18044 0.89938 0.97584 1.00139 1.84783 1.78703 1.33308 1.33148 0.88417 0.86840 0.78615 0.83124 0.75537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.05 13.93 21.82 0.30 -39.74 14 2 C 0.06 2.74 5.43 85.23 0.46 3.21 14 3 Si 0.95 40.53 24.45 68.60 1.68 42.21 14 4 H -0.25 -10.13 6.57 99.48 0.65 -9.48 14 5 H -0.27 -10.43 7.11 99.48 0.71 -9.73 14 6 H -0.26 -11.76 6.87 99.48 0.68 -11.08 14 7 C -0.42 -21.87 9.20 23.31 0.21 -21.65 14 8 H 0.08 4.43 7.86 -2.91 -0.02 4.41 14 9 C 0.08 4.12 5.15 -21.27 -0.11 4.01 14 10 C -0.25 -11.64 7.17 22.93 0.16 -11.48 14 11 C -0.07 -2.98 6.46 22.93 0.15 -2.83 14 12 S 0.05 1.81 23.29 -56.49 -1.32 0.49 14 13 C -0.22 -6.56 11.08 66.71 0.74 -5.82 14 14 C -0.09 -3.16 10.04 21.72 0.22 -2.94 14 15 C -0.23 -9.69 5.89 -21.27 -0.13 -9.82 14 16 C 0.13 5.79 7.31 22.65 0.17 5.96 14 17 F -0.14 -5.85 16.94 44.97 0.76 -5.09 14 18 C -0.01 -0.47 6.66 22.57 0.15 -0.32 14 19 O -0.49 -21.13 12.60 -92.61 -1.17 -22.30 14 20 H 0.30 13.41 8.30 -92.71 -0.77 12.64 14 21 H 0.11 5.24 4.38 -2.91 -0.01 5.23 14 22 H 0.20 4.06 8.06 -2.91 -0.02 4.04 14 23 H 0.15 4.36 8.06 -2.91 -0.02 4.34 14 24 H 0.39 13.13 9.06 -74.05 -0.67 12.46 14 Total: -1.00 -56.10 231.87 2.81 -53.29 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 0.52 Total: 12.82 kcal Atomic # 6 Polarization: -43.72 SS G_CDS: 2.03 Total: -41.69 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.30 Total: -39.74 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -1.17 Total: -22.30 kcal Atomic # 9 Polarization: -5.85 SS G_CDS: 0.76 Total: -5.09 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 1.68 Total: 42.21 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -1.32 Total: 0.49 kcal Total: -56.10 2.81 -53.29 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307325339.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.465 kcal (2) G-P(sol) polarization free energy of solvation -56.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds