Wall clock time and date at job start Mon Mar 30 2020 05:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30927 * 1 3 3 Si 1.86804 * 119.99554 * 2 1 4 4 H 1.48499 * 109.47418 * 275.40440 * 3 2 1 5 5 H 1.48497 * 109.47318 * 35.40411 * 3 2 1 6 6 H 1.48505 * 109.46807 * 155.40084 * 3 2 1 7 7 C 1.39881 * 120.00418 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99864 * 341.83187 * 7 2 1 9 9 C 1.40461 * 120.00134 * 161.83408 * 7 2 1 10 10 C 1.40397 * 120.32218 * 329.76837 * 9 7 2 11 11 C 1.37563 * 120.19533 * 180.29420 * 10 9 7 12 12 F 1.35093 * 119.53187 * 179.97438 * 11 10 9 13 13 C 1.39055 * 120.94246 * 359.95924 * 11 10 9 14 14 O 1.35729 * 119.35788 * 180.02562 * 13 11 10 15 15 C 1.40189 * 121.28686 * 0.03487 * 13 11 10 16 16 S 1.76071 * 130.57908 * 180.02562 * 15 13 11 17 17 C 1.75512 * 91.49820 * 179.97438 * 16 15 13 18 18 C 1.32672 * 110.63966 * 359.97438 * 17 16 15 19 19 C 1.39502 * 120.06762 * 359.97438 * 15 13 11 20 20 H 0.96996 * 120.00739 * 359.97438 * 1 2 3 21 21 H 1.08008 * 119.90147 * 0.24876 * 10 9 7 22 22 H 0.96693 * 114.00137 * 270.01787 * 14 13 11 23 23 H 1.08008 * 124.68388 * 179.97438 * 17 16 15 24 24 H 1.07995 * 122.10193 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2432 1.6178 0.0000 4 1 2.3765 2.1125 -1.3938 5 1 1.5023 2.6171 0.8111 6 1 3.5932 1.4100 0.5828 7 6 2.0088 -1.2114 -0.0005 8 1 1.5092 -2.1235 0.2907 9 6 3.3609 -1.2414 -0.3798 10 6 3.8558 -0.3174 -1.3138 11 6 5.1791 -0.3530 -1.6879 12 9 5.6410 0.5422 -2.5880 13 6 6.0483 -1.2972 -1.1525 14 8 7.3478 -1.3030 -1.5440 15 6 5.6084 -2.2435 -0.2163 16 16 6.4823 -3.5302 0.6088 17 6 5.0346 -4.0244 1.4693 18 6 4.0058 -3.2572 1.1329 19 6 4.2760 -2.2509 0.1968 20 1 -0.4851 0.8400 0.0004 21 1 3.1954 0.4232 -1.7404 22 1 7.5242 -1.8608 -2.3139 23 1 4.9876 -4.8404 2.1754 24 1 3.0215 -3.4001 1.5538 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307333499.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:31 Heat of formation + Delta-G solvation = -57.503794 kcal Electronic energy + Delta-G solvation = -14309.130328 eV Core-core repulsion = 11614.060623 eV Total energy + Delta-G solvation = -2695.069705 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.09458 -38.54183 -36.46269 -34.61936 -33.16056 -30.02626 -28.14025 -25.04434 -23.09226 -21.43103 -19.84006 -18.32156 -17.78509 -16.45093 -15.92017 -15.24337 -15.07282 -14.88074 -14.19039 -13.77416 -13.23767 -12.98561 -12.49905 -12.43210 -12.16417 -11.64358 -11.36683 -11.21085 -10.51930 -10.31071 -10.20887 -9.87878 -9.68514 -9.40945 -8.50845 -7.56404 -7.45671 -7.03326 -4.88294 1.50056 2.09528 2.32537 2.79350 2.89884 2.95607 3.09396 3.16760 3.69713 3.97054 4.84941 5.07705 5.30593 5.58698 5.97550 6.11614 6.24656 6.39976 6.53600 6.74639 6.91826 7.06048 7.19512 7.33237 7.49057 7.80841 8.05354 8.23612 8.48948 9.51084 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.024619 B = 0.011826 C = 0.008457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.058502 B = 2367.090469 C = 3310.014957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.081 3.919 3 Si 0.914 3.086 4 H -0.262 1.262 5 H -0.282 1.282 6 H -0.238 1.238 7 C -0.392 4.392 8 H 0.105 0.895 9 C 0.142 3.858 10 C -0.299 4.299 11 C 0.162 3.838 12 F -0.150 7.150 13 C -0.068 4.068 14 O -0.484 6.484 15 C -0.068 4.068 16 S 0.048 5.952 17 C -0.269 4.269 18 C -0.062 4.062 19 C -0.169 4.169 20 H 0.297 0.703 21 H 0.121 0.879 22 H 0.355 0.645 23 H 0.152 0.848 24 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.336 -2.233 0.146 4.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.144 4.144 3 Si 0.738 3.262 4 H -0.188 1.188 5 H -0.209 1.209 6 H -0.161 1.161 7 C -0.417 4.417 8 H 0.123 0.877 9 C 0.136 3.864 10 C -0.322 4.322 11 C 0.140 3.860 12 F -0.128 7.128 13 C -0.120 4.120 14 O -0.290 6.290 15 C -0.185 4.185 16 S 0.310 5.690 17 C -0.402 4.402 18 C -0.092 4.092 19 C -0.176 4.176 20 H 0.108 0.892 21 H 0.139 0.861 22 H 0.206 0.794 23 H 0.170 0.830 24 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.567 -2.325 0.689 6.072 hybrid contribution -1.292 0.987 -0.586 1.728 sum 4.275 -1.338 0.102 4.481 Atomic orbital electron populations 1.69690 1.08316 1.31739 1.29040 1.26425 0.94958 1.02571 0.90467 0.86199 0.81598 0.78560 0.79797 1.18762 1.20905 1.16063 1.19564 0.92511 0.96621 1.32987 0.87692 1.18192 0.91636 0.88287 0.88280 1.20532 0.93752 1.09119 1.08758 1.17470 0.91809 0.88307 0.88404 1.91376 1.89678 1.66131 1.65641 1.16668 0.84651 1.03097 1.07554 1.84932 1.22989 1.70621 1.50495 1.22467 0.96494 0.98585 1.00906 1.83624 1.13121 1.29898 1.42401 1.24735 0.96145 1.08490 1.10873 1.19719 0.99215 0.93711 0.96541 1.18965 0.91548 1.03215 1.03852 0.89234 0.86144 0.79353 0.83020 0.84899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.97 13.93 55.55 0.77 -17.20 14 2 C 0.08 1.89 5.40 -17.32 -0.09 1.80 14 3 Si 0.91 19.28 24.52 -169.99 -4.17 15.11 14 4 H -0.26 -5.44 6.71 56.52 0.38 -5.06 14 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 14 6 H -0.24 -5.33 6.87 56.52 0.39 -4.94 14 7 C -0.39 -9.45 9.29 -38.13 -0.35 -9.80 14 8 H 0.11 2.57 7.84 -52.49 -0.41 2.16 14 9 C 0.14 3.41 5.28 -104.27 -0.55 2.86 14 10 C -0.30 -7.10 7.10 -39.02 -0.28 -7.38 14 11 C 0.16 3.78 7.25 -39.52 -0.29 3.49 14 12 F -0.15 -3.33 17.04 2.25 0.04 -3.29 14 13 C -0.07 -1.53 6.73 -38.55 -0.26 -1.79 14 14 O -0.48 -9.84 13.26 -18.89 -0.25 -10.09 14 15 C -0.07 -1.52 6.42 -38.38 -0.25 -1.77 14 16 S 0.05 0.90 23.26 -107.50 -2.50 -1.60 14 17 C -0.27 -4.84 11.11 28.84 0.32 -4.52 14 18 C -0.06 -1.26 9.77 -40.79 -0.40 -1.65 14 19 C -0.17 -3.86 6.02 -104.76 -0.63 -4.49 14 20 H 0.30 6.21 8.30 -40.82 -0.34 5.87 14 21 H 0.12 2.79 4.73 -52.48 -0.25 2.54 14 22 H 0.35 5.60 9.06 45.56 0.41 6.01 14 23 H 0.15 2.23 8.06 -52.48 -0.42 1.80 14 24 H 0.13 2.48 7.84 -52.49 -0.41 2.07 14 LS Contribution 232.92 15.07 3.51 3.51 Total: -1.00 -25.96 232.92 -5.63 -31.58 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -0.25 Total: 5.23 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: -2.78 Total: -23.25 kcal Atomic # 7 Polarization: -17.97 SS G_CDS: 0.77 Total: -17.20 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: -0.25 Total: -10.09 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.04 Total: -3.29 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -4.17 Total: 15.11 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.50 Total: -1.60 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -25.96 -5.63 -31.58 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307333499.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.919 kcal (2) G-P(sol) polarization free energy of solvation -25.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds