Wall clock time and date at job start Mon Mar 30 2020 05:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30904 * 1 3 3 Si 1.86796 * 119.99919 * 2 1 4 4 H 1.48497 * 109.47452 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47165 * 300.00174 * 3 2 1 6 6 H 1.48507 * 109.47247 * 59.99930 * 3 2 1 7 7 C 1.39895 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99915 * 197.84662 * 7 2 1 9 9 C 1.40521 * 120.00169 * 17.84372 * 7 2 1 10 10 C 1.40366 * 120.39879 * 24.82992 * 9 7 2 11 11 C 1.37669 * 120.10274 * 179.97438 * 10 9 7 12 12 F 1.35108 * 119.46964 * 179.97438 * 11 10 9 13 13 C 1.38560 * 121.05855 * 359.97438 * 11 10 9 14 14 C 1.39307 * 121.46900 * 0.27862 * 13 11 10 15 15 S 1.76067 * 130.51273 * 180.30411 * 14 13 11 16 16 C 1.75494 * 91.56324 * 179.55447 * 15 14 13 17 17 O 1.35549 * 124.71032 * 179.77699 * 16 15 14 18 18 C 1.33676 * 110.58677 * 359.80895 * 16 15 14 19 19 C 1.39764 * 115.66326 * 0.02562 * 18 16 15 20 20 H 0.96992 * 120.00454 * 359.97438 * 1 2 3 21 21 H 1.08002 * 119.94805 * 359.97438 * 10 9 7 22 22 H 1.08003 * 119.26958 * 180.02562 * 13 11 10 23 23 H 0.96700 * 113.99889 * 270.04199 * 17 16 15 24 24 H 1.07998 * 122.17012 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.7030 1.3465 -0.0006 5 1 1.8842 2.3964 -1.2125 6 1 1.8842 2.3965 1.2125 7 6 2.0085 -1.2115 -0.0005 8 1 3.0496 -1.2341 0.2861 9 6 1.3567 -2.3991 -0.3740 10 6 0.2334 -2.3586 -1.2147 11 6 -0.4002 -3.5258 -1.5772 12 9 -1.4806 -3.4719 -2.3866 13 6 0.0523 -4.7549 -1.1251 14 6 1.1585 -4.8584 -0.2847 15 16 1.9329 -6.2752 0.4174 16 6 3.1350 -5.2799 1.2200 17 8 4.1306 -5.7560 2.0070 18 6 2.9322 -3.9869 0.9480 19 6 1.8465 -3.7069 0.1137 20 1 -0.4850 0.8399 0.0004 21 1 -0.1344 -1.4102 -1.5779 22 1 -0.4665 -5.6525 -1.4279 23 1 3.8927 -5.8283 2.9415 24 1 3.5657 -3.2089 1.3478 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307376044.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:04 Heat of formation + Delta-G solvation = -74.732771 kcal Electronic energy + Delta-G solvation = -13996.165212 eV Core-core repulsion = 11300.348402 eV Total energy + Delta-G solvation = -2695.816810 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.67735 -39.95922 -38.55616 -36.10424 -34.45511 -31.86970 -29.13647 -27.15221 -24.44426 -23.15498 -21.44944 -20.11654 -19.14856 -17.92471 -17.25359 -16.94758 -16.67722 -16.32522 -16.17041 -15.55546 -14.73374 -14.59288 -14.04183 -13.75968 -13.56088 -13.28211 -13.02201 -12.74793 -12.27189 -12.03918 -11.49981 -11.45506 -11.14831 -11.10557 -10.22866 -9.07244 -8.90598 -8.62919 -6.53346 -0.11738 0.61068 0.67490 1.13041 1.38324 1.46700 1.51496 1.56339 2.11405 2.44079 3.33034 3.45706 3.73396 4.26777 4.52134 4.63609 4.81886 4.94884 4.97326 5.12776 5.31216 5.60404 5.66303 5.76833 5.96404 6.35717 6.55140 6.63334 6.70981 8.01120 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.022090 B = 0.010017 C = 0.007037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.229385 B = 2794.442878 C = 3978.004161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.034 3.966 3 Si 0.994 3.006 4 H -0.250 1.250 5 H -0.262 1.262 6 H -0.260 1.260 7 C -0.434 4.434 8 H 0.100 0.900 9 C 0.142 3.858 10 C -0.254 4.254 11 C 0.143 3.857 12 F -0.158 7.158 13 C -0.280 4.280 14 C -0.067 4.067 15 S 0.050 5.950 16 C -0.043 4.043 17 O -0.454 6.454 18 C -0.098 4.098 19 C -0.206 4.206 20 H 0.302 0.698 21 H 0.121 0.879 22 H 0.121 0.879 23 H 0.401 0.599 24 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.503 -1.497 2.945 4.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.187 4.187 3 Si 0.813 3.187 4 H -0.173 1.173 5 H -0.186 1.186 6 H -0.184 1.184 7 C -0.460 4.460 8 H 0.118 0.882 9 C 0.137 3.863 10 C -0.277 4.277 11 C 0.121 3.879 12 F -0.137 7.137 13 C -0.307 4.307 14 C -0.182 4.182 15 S 0.309 5.691 16 C -0.202 4.202 17 O -0.265 6.265 18 C -0.129 4.129 19 C -0.212 4.212 20 H 0.113 0.887 21 H 0.139 0.861 22 H 0.139 0.861 23 H 0.258 0.742 24 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.393 -2.949 2.445 5.117 hybrid contribution -0.319 2.032 0.285 2.076 sum 3.074 -0.917 2.730 4.212 Atomic orbital electron populations 1.69886 1.09532 1.32272 1.29067 1.27088 0.95549 1.05346 0.90715 0.84957 0.79626 0.74756 0.79399 1.17310 1.18624 1.18438 1.20012 0.99090 0.91388 1.35475 0.88195 1.18478 0.89807 0.90703 0.87329 1.20875 1.03225 0.96067 1.07491 1.17407 0.84438 0.94725 0.91317 1.91353 1.53452 1.97524 1.71376 1.19384 1.03595 0.95723 1.11955 1.22022 0.98954 0.95801 1.01462 1.83452 1.25923 1.08155 1.51540 1.21732 0.98458 0.92388 1.07580 1.84743 1.33707 1.84782 1.23240 1.20202 0.97292 0.95850 0.99537 1.19083 1.01166 0.93404 1.07553 0.88655 0.86083 0.86136 0.74186 0.83969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -36.88 10.97 21.82 0.24 -36.64 14 2 C 0.03 1.51 5.13 85.23 0.44 1.95 14 3 Si 0.99 32.96 29.60 68.60 2.03 34.99 14 4 H -0.25 -8.06 7.11 99.48 0.71 -7.35 14 5 H -0.26 -8.46 7.11 99.48 0.71 -7.75 14 6 H -0.26 -8.22 7.11 99.48 0.71 -7.51 14 7 C -0.43 -20.80 8.81 23.23 0.20 -20.59 14 8 H 0.10 4.48 7.51 -2.91 -0.02 4.46 14 9 C 0.14 7.29 5.76 -19.64 -0.11 7.18 14 10 C -0.25 -13.18 8.62 22.65 0.20 -12.98 14 11 C 0.14 7.04 7.24 22.21 0.16 7.20 14 12 F -0.16 -7.37 17.24 44.97 0.78 -6.60 14 13 C -0.28 -13.05 9.98 22.60 0.23 -12.82 14 14 C -0.07 -3.06 6.47 22.94 0.15 -2.91 14 15 S 0.05 1.89 23.29 -56.49 -1.32 0.57 14 16 C -0.04 -1.59 7.55 66.78 0.50 -1.09 14 17 O -0.45 -13.83 13.64 -88.54 -1.21 -15.04 14 18 C -0.10 -4.09 9.79 21.60 0.21 -3.88 14 19 C -0.21 -9.87 6.02 -19.93 -0.12 -9.99 14 20 H 0.30 12.50 8.30 -92.71 -0.77 11.73 14 21 H 0.12 6.43 6.16 -2.91 -0.02 6.41 14 22 H 0.12 5.06 8.06 -2.91 -0.02 5.03 14 23 H 0.40 7.86 9.06 -74.06 -0.67 7.19 14 24 H 0.14 5.55 7.71 -2.91 -0.02 5.53 14 Total: -1.00 -55.88 238.23 2.97 -52.91 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: 0.59 Total: 17.75 kcal Atomic # 6 Polarization: -49.80 SS G_CDS: 1.85 Total: -47.94 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: 0.24 Total: -36.64 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -1.21 Total: -15.04 kcal Atomic # 9 Polarization: -7.37 SS G_CDS: 0.78 Total: -6.60 kcal Atomic # 14 Polarization: 32.96 SS G_CDS: 2.03 Total: 34.99 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -1.32 Total: 0.57 kcal Total: -55.88 2.97 -52.91 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307376044.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.827 kcal (2) G-P(sol) polarization free energy of solvation -55.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds