Wall clock time and date at job start Mon Mar 30 2020 05:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30886 * 1 3 3 Si 1.86805 * 119.99793 * 2 1 4 4 H 1.48495 * 109.47140 * 269.99968 * 3 2 1 5 5 H 1.48495 * 109.47397 * 30.00284 * 3 2 1 6 6 H 1.48499 * 109.46804 * 150.00476 * 3 2 1 7 7 C 1.39899 * 120.00060 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99757 * 194.87316 * 7 2 1 9 9 C 1.40547 * 120.00059 * 14.87551 * 7 2 1 10 10 C 1.40348 * 120.38945 * 26.44150 * 9 7 2 11 11 C 1.37768 * 120.11521 * 180.02562 * 10 9 7 12 12 F 1.35099 * 119.48198 * 180.02562 * 11 10 9 13 13 C 1.38438 * 121.03582 * 359.97438 * 11 10 9 14 14 C 1.39539 * 121.43683 * 359.97438 * 13 11 10 15 15 S 1.76064 * 130.53920 * 179.97438 * 14 13 11 16 16 C 1.75494 * 91.57446 * 179.83383 * 15 14 13 17 17 C 1.33184 * 110.66686 * 0.33325 * 16 15 14 18 18 O 1.36115 * 122.16330 * 179.85852 * 17 16 15 19 19 C 1.39820 * 120.06800 * 0.02562 * 14 13 11 20 20 H 0.97004 * 119.99600 * 359.97438 * 1 2 3 21 21 H 1.08005 * 119.94499 * 0.02562 * 10 9 7 22 22 H 1.08005 * 119.28322 * 180.02562 * 13 11 10 23 23 H 1.07997 * 124.66254 * 180.23422 * 16 15 14 24 24 H 0.96701 * 114.00388 * 269.72040 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.4903 2.0465 -1.4000 5 1 1.4403 2.6527 0.7001 6 1 3.5404 1.4402 0.6999 7 6 2.0084 -1.2115 -0.0005 8 1 3.0612 -1.2273 0.2395 9 6 1.3410 -2.4082 -0.3135 10 6 0.2006 -2.3921 -1.1316 11 6 -0.4495 -3.5684 -1.4343 12 9 -1.5457 -3.5382 -2.2234 13 6 0.0035 -4.7811 -0.9436 14 6 1.1321 -4.8598 -0.1267 15 16 1.9089 -6.2517 0.6207 16 6 3.1381 -5.2344 1.3515 17 6 2.9371 -3.9556 1.0381 18 8 3.7543 -2.9630 1.4849 19 6 1.8325 -3.6986 0.2141 20 1 -0.4850 0.8401 0.0004 21 1 -0.1679 -1.4560 -1.5244 22 1 -0.5276 -5.6861 -1.1992 23 1 3.9454 -5.5954 1.9714 24 1 3.4801 -2.5775 2.3283 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307383170.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:06 Heat of formation + Delta-G solvation = -58.870278 kcal Electronic energy + Delta-G solvation = -14255.015798 eV Core-core repulsion = 11559.886837 eV Total energy + Delta-G solvation = -2695.128961 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -47.83278 -38.61533 -36.32473 -34.29591 -32.25077 -29.96087 -27.81473 -25.53887 -22.52210 -21.44462 -19.82612 -18.19406 -16.78990 -16.31125 -15.69819 -15.14281 -15.02182 -14.53419 -14.36293 -13.79268 -13.11127 -12.50789 -12.11689 -11.90153 -11.82926 -11.69504 -11.42045 -11.10714 -10.68532 -10.46359 -9.92222 -9.77728 -9.43094 -9.40173 -8.31853 -7.38653 -7.16957 -6.84367 -4.71723 1.67968 2.44301 2.46553 2.84385 2.88394 2.93347 2.95942 3.23770 3.64072 4.18873 5.11778 5.31215 5.57280 5.77319 6.13316 6.34784 6.61583 6.67446 6.76045 6.90184 7.08820 7.32601 7.49394 7.62034 7.82472 8.22474 8.34215 8.42846 8.49442 9.69979 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.022994 B = 0.011159 C = 0.007674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.391105 B = 2508.694888 C = 3647.667731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.760 5.760 2 C 0.067 3.933 3 Si 0.922 3.078 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.255 1.255 7 C -0.410 4.410 8 H 0.107 0.893 9 C 0.172 3.828 10 C -0.229 4.229 11 C 0.153 3.847 12 F -0.160 7.160 13 C -0.273 4.273 14 C -0.042 4.042 15 S 0.037 5.963 16 C -0.320 4.320 17 C 0.172 3.828 18 O -0.485 6.485 19 C -0.224 4.224 20 H 0.291 0.709 21 H 0.135 0.865 22 H 0.105 0.895 23 H 0.152 0.848 24 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.263 -1.210 2.075 3.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.382 5.382 2 C -0.156 4.156 3 Si 0.745 3.255 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.178 1.178 7 C -0.436 4.436 8 H 0.124 0.876 9 C 0.166 3.834 10 C -0.251 4.251 11 C 0.131 3.869 12 F -0.139 7.139 13 C -0.300 4.300 14 C -0.157 4.157 15 S 0.296 5.704 16 C -0.454 4.454 17 C 0.116 3.884 18 O -0.295 6.295 19 C -0.230 4.230 20 H 0.102 0.898 21 H 0.153 0.847 22 H 0.123 0.877 23 H 0.169 0.831 24 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 2.141 -2.700 1.641 3.816 hybrid contribution 0.064 2.214 0.341 2.241 sum 2.204 -0.486 1.981 3.004 Atomic orbital electron populations 1.69853 1.07980 1.30635 1.29742 1.26260 0.94956 1.02418 0.91981 0.86046 0.80519 0.78969 0.79945 1.18727 1.19852 1.17843 1.19997 0.98501 0.90017 1.35134 0.87557 1.18117 0.89264 0.89566 0.86407 1.21017 1.01499 0.96132 1.06441 1.17318 0.83715 0.94514 0.91343 1.91360 1.52435 1.97555 1.72590 1.19241 1.02526 0.95909 1.12339 1.21669 0.98535 0.94937 1.00530 1.83423 1.24137 1.10013 1.52820 1.24605 1.08397 0.96279 1.16084 1.16975 0.89457 0.86672 0.95263 1.84779 1.50455 1.51802 1.42455 1.19276 1.00467 0.94250 1.09051 0.89770 0.84712 0.87681 0.83072 0.76214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.77 10.91 55.55 0.61 -17.16 14 2 C 0.07 1.50 5.18 -17.33 -0.09 1.41 14 3 Si 0.92 16.75 29.59 -169.99 -5.03 11.72 14 4 H -0.26 -4.78 7.11 56.52 0.40 -4.38 14 5 H -0.27 -4.84 7.11 56.52 0.40 -4.44 14 6 H -0.25 -4.58 7.11 56.52 0.40 -4.18 14 7 C -0.41 -9.88 8.51 -38.09 -0.32 -10.20 14 8 H 0.11 2.49 6.28 -52.49 -0.33 2.16 14 9 C 0.17 4.39 5.74 -104.31 -0.60 3.79 14 10 C -0.23 -5.81 8.61 -38.96 -0.34 -6.14 14 11 C 0.15 3.72 7.24 -39.68 -0.29 3.43 14 12 F -0.16 -3.70 17.24 2.25 0.04 -3.66 14 13 C -0.27 -6.38 9.99 -39.02 -0.39 -6.77 14 14 C -0.04 -0.97 6.48 -38.51 -0.25 -1.22 14 15 S 0.04 0.72 23.29 -107.50 -2.50 -1.78 14 16 C -0.32 -6.30 11.08 28.97 0.32 -5.98 14 17 C 0.17 3.75 6.68 -40.61 -0.27 3.48 14 18 O -0.49 -9.61 11.40 -20.10 -0.23 -9.83 14 19 C -0.22 -5.45 6.03 -104.65 -0.63 -6.08 14 20 H 0.29 6.09 8.30 -40.82 -0.34 5.75 14 21 H 0.14 3.47 6.17 -52.48 -0.32 3.15 14 22 H 0.11 2.23 8.06 -52.48 -0.42 1.81 14 23 H 0.15 2.57 8.06 -52.49 -0.42 2.14 14 24 H 0.38 5.97 9.07 45.56 0.41 6.38 14 LS Contribution 235.22 15.07 3.54 3.54 Total: -1.00 -26.41 235.22 -6.65 -33.06 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -0.22 Total: 8.40 kcal Atomic # 6 Polarization: -21.43 SS G_CDS: -2.86 Total: -24.29 kcal Atomic # 7 Polarization: -17.77 SS G_CDS: 0.61 Total: -17.16 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: -0.23 Total: -9.83 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.04 Total: -3.66 kcal Atomic # 14 Polarization: 16.75 SS G_CDS: -5.03 Total: 11.72 kcal Atomic # 16 Polarization: 0.72 SS G_CDS: -2.50 Total: -1.78 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -26.41 -6.65 -33.06 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307383170.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.806 kcal (2) G-P(sol) polarization free energy of solvation -26.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds