Wall clock time and date at job start Mon Mar 30 2020 05:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30886 * 1 3 3 Si 1.86805 * 119.99793 * 2 1 4 4 H 1.48495 * 109.47140 * 269.99968 * 3 2 1 5 5 H 1.48495 * 109.47397 * 30.00284 * 3 2 1 6 6 H 1.48499 * 109.46804 * 150.00476 * 3 2 1 7 7 C 1.39899 * 120.00060 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99757 * 194.87316 * 7 2 1 9 9 C 1.40547 * 120.00059 * 14.87551 * 7 2 1 10 10 C 1.40348 * 120.38945 * 26.44150 * 9 7 2 11 11 C 1.37768 * 120.11521 * 180.02562 * 10 9 7 12 12 F 1.35099 * 119.48198 * 180.02562 * 11 10 9 13 13 C 1.38438 * 121.03582 * 359.97438 * 11 10 9 14 14 C 1.39539 * 121.43683 * 359.97438 * 13 11 10 15 15 S 1.76064 * 130.53920 * 179.97438 * 14 13 11 16 16 C 1.75494 * 91.57446 * 179.83383 * 15 14 13 17 17 C 1.33184 * 110.66686 * 0.33325 * 16 15 14 18 18 O 1.36115 * 122.16330 * 179.85852 * 17 16 15 19 19 C 1.39820 * 120.06800 * 0.02562 * 14 13 11 20 20 H 0.97004 * 119.99600 * 359.97438 * 1 2 3 21 21 H 1.08005 * 119.94499 * 0.02562 * 10 9 7 22 22 H 1.08005 * 119.28322 * 180.02562 * 13 11 10 23 23 H 1.07997 * 124.66254 * 180.23422 * 16 15 14 24 24 H 0.96701 * 114.00388 * 269.72040 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.4903 2.0465 -1.4000 5 1 1.4403 2.6527 0.7001 6 1 3.5404 1.4402 0.6999 7 6 2.0084 -1.2115 -0.0005 8 1 3.0612 -1.2273 0.2395 9 6 1.3410 -2.4082 -0.3135 10 6 0.2006 -2.3921 -1.1316 11 6 -0.4495 -3.5684 -1.4343 12 9 -1.5457 -3.5382 -2.2234 13 6 0.0035 -4.7811 -0.9436 14 6 1.1321 -4.8598 -0.1267 15 16 1.9089 -6.2517 0.6207 16 6 3.1381 -5.2344 1.3515 17 6 2.9371 -3.9556 1.0381 18 8 3.7543 -2.9630 1.4849 19 6 1.8325 -3.6986 0.2141 20 1 -0.4850 0.8401 0.0004 21 1 -0.1679 -1.4560 -1.5244 22 1 -0.5276 -5.6861 -1.1992 23 1 3.9454 -5.5954 1.9714 24 1 3.4801 -2.5775 2.3283 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307383170.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:06 Heat of formation + Delta-G solvation = -74.420561 kcal Electronic energy + Delta-G solvation = -14255.690109 eV Core-core repulsion = 11559.886837 eV Total energy + Delta-G solvation = -2695.803272 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.68785 -40.29525 -37.99204 -36.02215 -33.94825 -31.75360 -29.56907 -27.31107 -24.26102 -23.22489 -21.52008 -19.94672 -18.47460 -18.04772 -17.37275 -16.87685 -16.66473 -16.36645 -16.09009 -15.47437 -14.70887 -14.24735 -13.81721 -13.62005 -13.53325 -13.35669 -12.99990 -12.73519 -12.30860 -12.01422 -11.65119 -11.45624 -11.12790 -11.08016 -10.07800 -9.14850 -8.87492 -8.50745 -6.52588 -0.04460 0.67402 0.79428 1.20158 1.38534 1.47985 1.51270 1.54334 2.12521 2.45887 3.33875 3.69624 3.75618 4.16165 4.38599 4.60605 4.83586 4.96840 5.04734 5.12950 5.36764 5.60907 5.64812 5.81025 6.00518 6.42071 6.58887 6.66716 6.95010 8.04043 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.022994 B = 0.011159 C = 0.007674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.391105 B = 2508.694888 C = 3647.667731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.032 3.968 3 Si 0.994 3.006 4 H -0.262 1.262 5 H -0.263 1.263 6 H -0.249 1.249 7 C -0.429 4.429 8 H 0.108 0.892 9 C 0.144 3.856 10 C -0.257 4.257 11 C 0.142 3.858 12 F -0.159 7.159 13 C -0.282 4.282 14 C -0.072 4.072 15 S 0.101 5.899 16 C -0.300 4.300 17 C 0.146 3.854 18 O -0.489 6.489 19 C -0.242 4.242 20 H 0.300 0.700 21 H 0.120 0.880 22 H 0.123 0.877 23 H 0.186 0.814 24 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.651 -1.690 3.107 5.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.188 4.188 3 Si 0.813 3.187 4 H -0.187 1.187 5 H -0.188 1.188 6 H -0.172 1.172 7 C -0.455 4.455 8 H 0.126 0.874 9 C 0.138 3.862 10 C -0.280 4.280 11 C 0.120 3.880 12 F -0.138 7.138 13 C -0.309 4.309 14 C -0.188 4.188 15 S 0.362 5.638 16 C -0.433 4.433 17 C 0.090 3.910 18 O -0.300 6.300 19 C -0.249 4.249 20 H 0.111 0.889 21 H 0.138 0.862 22 H 0.141 0.859 23 H 0.203 0.797 24 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 3.511 -3.204 2.681 5.457 hybrid contribution -0.329 2.225 0.095 2.251 sum 3.182 -0.980 2.776 4.335 Atomic orbital electron populations 1.69893 1.09495 1.32067 1.29865 1.27120 0.95538 1.05338 0.90817 0.84991 0.79291 0.74525 0.79864 1.18710 1.18766 1.17169 1.20187 0.98631 0.90659 1.36020 0.87392 1.18473 0.89748 0.90945 0.87002 1.20948 1.02899 0.95995 1.08140 1.17467 0.83892 0.94919 0.91706 1.91347 1.52278 1.97592 1.72542 1.19427 1.02950 0.96005 1.12478 1.22085 0.98768 0.96959 1.00940 1.83182 1.22479 1.07207 1.50971 1.25117 1.08334 0.95581 1.14312 1.16999 0.89776 0.87914 0.96323 1.84737 1.49938 1.51669 1.43670 1.19690 1.01533 0.94273 1.09363 0.88872 0.86177 0.85935 0.79696 0.74404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -37.76 10.91 21.82 0.24 -37.52 14 2 C 0.03 1.45 5.18 85.24 0.44 1.89 14 3 Si 0.99 33.87 29.59 68.60 2.03 35.90 14 4 H -0.26 -8.89 7.11 99.48 0.71 -8.18 14 5 H -0.26 -8.47 7.11 99.48 0.71 -7.76 14 6 H -0.25 -8.14 7.11 99.48 0.71 -7.43 14 7 C -0.43 -21.00 8.51 23.24 0.20 -20.80 14 8 H 0.11 5.09 6.28 -2.91 -0.02 5.07 14 9 C 0.14 7.52 5.74 -19.66 -0.11 7.41 14 10 C -0.26 -13.62 8.61 22.67 0.20 -13.42 14 11 C 0.14 7.09 7.24 22.21 0.16 7.25 14 12 F -0.16 -7.50 17.24 44.97 0.78 -6.72 14 13 C -0.28 -13.18 9.99 22.63 0.23 -12.96 14 14 C -0.07 -3.30 6.48 22.97 0.15 -3.15 14 15 S 0.10 3.66 23.29 -56.49 -1.32 2.34 14 16 C -0.30 -10.78 11.08 66.68 0.74 -10.04 14 17 C 0.15 6.11 6.68 21.60 0.14 6.26 14 18 O -0.49 -18.58 11.40 -94.85 -1.08 -19.66 14 19 C -0.24 -11.74 6.03 -19.89 -0.12 -11.86 14 20 H 0.30 12.73 8.30 -92.71 -0.77 11.96 14 21 H 0.12 6.54 6.17 -2.91 -0.02 6.52 14 22 H 0.12 5.11 8.06 -2.91 -0.02 5.09 14 23 H 0.19 5.36 8.06 -2.91 -0.02 5.33 14 24 H 0.40 11.83 9.07 -74.06 -0.67 11.16 14 Total: -1.00 -56.59 235.22 3.26 -53.33 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: 0.60 Total: 21.75 kcal Atomic # 6 Polarization: -51.44 SS G_CDS: 2.02 Total: -49.42 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 0.24 Total: -37.52 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -1.08 Total: -19.66 kcal Atomic # 9 Polarization: -7.50 SS G_CDS: 0.78 Total: -6.72 kcal Atomic # 14 Polarization: 33.87 SS G_CDS: 2.03 Total: 35.90 kcal Atomic # 16 Polarization: 3.66 SS G_CDS: -1.32 Total: 2.34 kcal Total: -56.59 3.26 -53.33 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307383170.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.092 kcal (2) G-P(sol) polarization free energy of solvation -56.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds