Wall clock time and date at job start Mon Mar 30 2020 05:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86803 * 119.99833 * 2 1 4 4 H 1.48504 * 109.46689 * 239.99699 * 3 2 1 5 5 H 1.48498 * 109.47058 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47045 * 120.00035 * 3 2 1 7 7 C 1.39948 * 120.00115 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00504 * 200.00077 * 7 2 1 9 9 C 1.40539 * 120.00058 * 20.00151 * 7 2 1 10 10 C 1.47924 * 120.37953 * 216.67919 * 9 7 2 11 11 C 1.40075 * 129.13220 * 359.95577 * 10 9 7 12 12 C 1.32668 * 115.81003 * 180.02562 * 11 10 9 13 13 S 1.75512 * 110.65985 * 359.97438 * 12 11 10 14 14 C 1.39634 * 118.17562 * 179.97438 * 10 9 7 15 15 C 1.39724 * 120.15485 * 359.96561 * 14 10 9 16 16 C 1.38428 * 121.44770 * 0.07349 * 15 14 10 17 17 O 1.35984 * 119.52471 * 179.97438 * 16 15 14 18 18 C 1.38369 * 120.93995 * 359.92315 * 16 15 14 19 19 F 1.35101 * 119.97917 * 180.02562 * 18 16 15 20 20 H 0.96995 * 119.99918 * 0.02562 * 1 2 3 21 21 H 1.08005 * 122.09508 * 0.04009 * 11 10 9 22 22 H 1.07999 * 124.67308 * 180.26792 * 12 11 10 23 23 H 1.07994 * 119.27806 * 179.97438 * 15 14 10 24 24 H 0.96698 * 114.00083 * 269.96361 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.0966 1.6963 -1.2125 5 1 1.2778 2.7465 -0.0006 6 1 3.0965 1.6964 1.2124 7 6 2.0086 -1.2120 0.0005 8 1 3.0397 -1.2401 0.3204 9 6 1.3695 -2.3926 -0.4152 10 6 1.6631 -3.6781 0.2551 11 6 2.5384 -3.9420 1.3164 12 6 2.5982 -5.2060 1.7151 13 16 1.5214 -6.2087 0.7583 14 6 1.0016 -4.8225 -0.1949 15 6 0.0898 -4.7369 -1.2502 16 6 -0.1809 -3.5315 -1.8747 17 8 -1.0752 -3.4932 -2.8985 18 6 0.4445 -2.3651 -1.4714 19 9 0.1654 -1.1992 -2.0943 20 1 -0.4850 0.8400 -0.0004 21 1 3.1276 -3.1652 1.7811 22 1 3.2199 -5.5672 2.5209 23 1 -0.4136 -5.6310 -1.5870 24 1 -0.6811 -3.6333 -3.7703 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307418267.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:34 Heat of formation + Delta-G solvation = -50.680580 kcal Electronic energy + Delta-G solvation = -14420.689846 eV Core-core repulsion = 11725.916018 eV Total energy + Delta-G solvation = -2694.773829 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -47.03107 -38.31112 -36.61682 -34.20629 -32.73262 -29.94041 -27.35481 -25.42855 -22.56513 -21.53246 -19.50836 -18.33773 -16.98416 -16.35205 -15.47234 -15.22850 -15.07215 -14.43513 -13.53812 -13.45848 -12.98529 -12.54577 -12.34443 -12.12338 -11.78436 -11.50662 -11.24403 -10.93275 -10.85662 -10.54462 -10.05379 -9.64464 -9.51959 -9.21844 -8.23261 -7.26473 -7.14317 -6.80644 -4.66798 1.64486 2.45248 2.49345 2.90358 2.93617 2.96258 3.01130 3.29890 3.72883 4.25929 4.88790 5.21217 5.64043 5.86726 6.07281 6.34300 6.62457 6.72282 6.76558 6.88735 7.01806 7.34151 7.45467 7.45867 7.63531 7.97727 8.30589 8.38114 8.66058 9.83366 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.025932 B = 0.010813 C = 0.007912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.468764 B = 2588.882884 C = 3538.053893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.745 5.745 2 C 0.072 3.928 3 Si 0.919 3.081 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.262 1.262 7 C -0.429 4.429 8 H 0.094 0.906 9 C 0.133 3.867 10 C -0.167 4.167 11 C -0.058 4.058 12 C -0.266 4.266 13 S 0.012 5.988 14 C -0.069 4.069 15 C -0.233 4.233 16 C 0.130 3.870 17 O -0.499 6.499 18 C -0.015 4.015 19 F -0.137 7.137 20 H 0.292 0.708 21 H 0.129 0.871 22 H 0.149 0.851 23 H 0.108 0.892 24 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.144 -2.822 -0.589 4.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.366 5.366 2 C -0.153 4.153 3 Si 0.742 3.258 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.186 1.186 7 C -0.455 4.455 8 H 0.112 0.888 9 C 0.126 3.874 10 C -0.173 4.173 11 C -0.088 4.088 12 C -0.399 4.399 13 S 0.272 5.728 14 C -0.185 4.185 15 C -0.259 4.259 16 C 0.082 3.918 17 O -0.308 6.308 18 C -0.038 4.038 19 F -0.115 7.115 20 H 0.104 0.896 21 H 0.147 0.853 22 H 0.167 0.833 23 H 0.126 0.874 24 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 2.210 -4.055 -0.040 4.618 hybrid contribution 0.785 2.269 -0.407 2.435 sum 2.995 -1.785 -0.447 3.515 Atomic orbital electron populations 1.69780 1.08046 1.31067 1.27693 1.26018 0.94817 1.01894 0.92583 0.86158 0.80139 0.79226 0.80284 1.18337 1.19890 1.18608 1.19430 0.99309 0.90938 1.35853 0.88801 1.18166 0.89840 0.90938 0.88426 1.18950 1.04605 0.93162 1.00627 1.19689 0.97635 0.95624 0.95842 1.24579 1.09926 0.96752 1.08662 1.83483 1.44332 1.12054 1.32932 1.22054 1.01274 0.95188 0.99945 1.19448 1.06835 0.96338 1.03251 1.17913 0.90935 0.91691 0.91240 1.84819 1.34510 1.94840 1.16626 1.17594 1.06203 0.80710 0.99321 1.91318 1.92808 1.46535 1.80882 0.89630 0.85289 0.83326 0.87413 0.76965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -19.05 11.12 55.55 0.62 -18.43 14 2 C 0.07 1.73 4.49 -17.32 -0.08 1.65 14 3 Si 0.92 17.84 29.60 -169.99 -5.03 12.81 14 4 H -0.26 -5.02 7.11 56.52 0.40 -4.62 14 5 H -0.27 -5.20 7.11 56.52 0.40 -4.80 14 6 H -0.26 -4.90 7.11 56.52 0.40 -4.50 14 7 C -0.43 -10.72 8.64 -38.07 -0.33 -11.05 14 8 H 0.09 2.18 7.92 -52.49 -0.42 1.76 14 9 C 0.13 3.43 5.58 -104.24 -0.58 2.85 14 10 C -0.17 -4.01 6.02 -104.72 -0.63 -4.64 14 11 C -0.06 -1.23 9.79 -40.79 -0.40 -1.63 14 12 C -0.27 -4.99 11.11 28.84 0.32 -4.67 14 13 S 0.01 0.23 23.30 -107.50 -2.50 -2.28 14 14 C -0.07 -1.59 6.48 -38.51 -0.25 -1.84 14 15 C -0.23 -5.29 9.94 -38.96 -0.39 -5.68 14 16 C 0.13 3.09 6.66 -39.46 -0.26 2.82 14 17 O -0.50 -10.47 13.31 -19.69 -0.26 -10.73 14 18 C -0.01 -0.39 6.67 -38.71 -0.26 -0.65 14 19 F -0.14 -3.65 14.05 2.25 0.03 -3.62 14 20 H 0.29 6.80 8.30 -40.82 -0.34 6.46 14 21 H 0.13 2.51 8.04 -52.48 -0.42 2.09 14 22 H 0.15 2.29 8.06 -52.49 -0.42 1.87 14 23 H 0.11 2.21 8.06 -52.49 -0.42 1.79 14 24 H 0.38 5.77 9.06 45.56 0.41 6.19 14 LS Contribution 237.53 15.07 3.58 3.58 Total: -1.00 -28.44 237.53 -6.83 -35.27 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -0.40 Total: 6.23 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: -2.86 Total: -22.83 kcal Atomic # 7 Polarization: -19.05 SS G_CDS: 0.62 Total: -18.43 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: -0.26 Total: -10.73 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.03 Total: -3.62 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.03 Total: 12.81 kcal Atomic # 16 Polarization: 0.23 SS G_CDS: -2.50 Total: -2.28 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -28.44 -6.83 -35.27 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307418267.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.411 kcal (2) G-P(sol) polarization free energy of solvation -28.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds