Wall clock time and date at job start Mon Mar 30 2020 05:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99973 * 2 1 4 4 H 1.48499 * 109.46875 * 269.99988 * 3 2 1 5 5 H 1.48496 * 109.47226 * 30.00100 * 3 2 1 6 6 H 1.48506 * 109.46978 * 150.00254 * 3 2 1 7 7 C 1.37875 * 120.00229 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99780 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00220 * 180.02562 * 7 2 1 10 10 C 1.50702 * 109.46933 * 179.97438 * 9 7 2 11 11 C 1.38732 * 120.11492 * 263.79479 * 10 9 7 12 12 S 1.76198 * 120.01208 * 0.25531 * 11 10 9 13 13 C 1.39057 * 119.98186 * 180.29779 * 11 10 9 14 14 C 1.38228 * 120.22589 * 359.95941 * 13 11 10 15 15 C 1.37986 * 120.23885 * 0.03821 * 14 13 11 16 16 C 1.39484 * 120.12130 * 84.07524 * 10 9 7 17 17 C 1.47746 * 120.10809 * 359.74091 * 16 10 9 18 18 O 1.21464 * 120.00474 * 353.94040 * 17 16 10 19 19 O 1.34711 * 119.99872 * 173.93183 * 17 16 10 20 20 H 0.97003 * 119.99751 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.47199 * 59.99939 * 9 7 2 22 22 H 1.08997 * 109.46677 * 299.99025 * 9 7 2 23 23 H 1.34501 * 102.99773 * 89.99496 * 12 11 10 24 24 H 1.08007 * 119.88547 * 179.97438 * 13 11 10 25 25 H 1.08006 * 119.87923 * 180.02562 * 14 13 11 26 26 H 1.08003 * 119.99017 * 179.97438 * 15 14 13 27 27 H 0.96695 * 117.00277 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0139 -2.6149 -0.0001 11 6 4.3677 -3.2282 1.1930 12 16 4.2239 -2.3483 2.7127 13 6 4.8367 -4.5372 1.1890 14 6 4.9514 -5.2317 -0.0007 15 6 4.6020 -4.6307 -1.1926 16 6 4.1302 -3.3160 -1.2002 17 6 3.7560 -2.6702 -2.4752 18 8 3.2437 -1.5689 -2.4708 19 8 3.9831 -3.3026 -3.6428 20 1 -0.4850 0.8401 0.0004 21 1 3.8746 -0.6808 0.8905 22 1 3.8752 -0.6797 -0.8895 23 1 2.9722 -2.6363 3.1118 24 1 5.1121 -5.0131 2.1186 25 1 5.3159 -6.2484 0.0028 26 1 4.6935 -5.1769 -2.1198 27 1 3.7209 -2.8405 -4.4507 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307420082.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:11 Heat of formation + Delta-G solvation = -80.912294 kcal Electronic energy + Delta-G solvation = -14688.588290 eV Core-core repulsion = 12115.963821 eV Total energy + Delta-G solvation = -2572.624469 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.045 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.43934 -39.56785 -37.04893 -35.31414 -33.38695 -32.39903 -29.61420 -25.85343 -24.65164 -23.14981 -21.58710 -19.38245 -19.02270 -18.42945 -17.62699 -16.83604 -16.61941 -16.31968 -16.07453 -15.58347 -14.85320 -14.40570 -14.12943 -13.95134 -13.53670 -13.06597 -12.81302 -12.64311 -12.39386 -12.18217 -11.93218 -11.70542 -11.53301 -11.02236 -10.67213 -9.99934 -9.66086 -8.90757 -8.27689 -6.25901 -0.29985 0.13808 0.82053 1.33201 1.35875 1.47050 1.59643 1.91603 2.19351 2.37883 2.77731 3.11357 3.93163 4.04793 4.05441 4.25744 4.44083 4.75816 4.88349 5.04418 5.18308 5.29107 5.30757 5.57992 5.66972 5.76922 5.84270 6.20113 6.71187 7.15332 7.34259 8.89501 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.020090 B = 0.012220 C = 0.008449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.391910 B = 2290.690397 C = 3313.116274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C 0.013 3.987 3 Si 0.937 3.063 4 H -0.277 1.277 5 H -0.281 1.281 6 H -0.240 1.240 7 C -0.471 4.471 8 H 0.016 0.984 9 C 0.001 3.999 10 C 0.032 3.968 11 C -0.147 4.147 12 S -0.122 6.122 13 C -0.027 4.027 14 C -0.143 4.143 15 C -0.029 4.029 16 C -0.162 4.162 17 C 0.509 3.491 18 O -0.513 6.513 19 O -0.506 6.506 20 H 0.263 0.737 21 H 0.048 0.952 22 H 0.043 0.957 23 H 0.069 0.931 24 H 0.169 0.831 25 H 0.183 0.817 26 H 0.167 0.833 27 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.528 -11.228 -1.393 17.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.183 4.183 3 Si 0.761 3.239 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.164 1.164 7 C -0.510 4.510 8 H 0.035 0.965 9 C -0.037 4.037 10 C 0.029 3.971 11 C -0.259 4.259 12 S 0.036 5.964 13 C -0.048 4.048 14 C -0.163 4.163 15 C -0.047 4.047 16 C -0.165 4.165 17 C 0.353 3.647 18 O -0.403 6.403 19 O -0.320 6.320 20 H 0.072 0.928 21 H 0.066 0.934 22 H 0.061 0.939 23 H 0.033 0.967 24 H 0.186 0.814 25 H 0.200 0.800 26 H 0.184 0.816 27 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 13.504 -10.473 -0.243 17.091 hybrid contribution -1.672 0.721 -1.357 2.271 sum 11.831 -9.752 -1.600 15.416 Atomic orbital electron populations 1.70037 1.08037 1.27727 1.54003 1.25700 0.95379 1.02786 0.94446 0.85846 0.80210 0.79147 0.78722 1.20255 1.20703 1.16367 1.20593 0.89672 0.92058 1.48637 0.96544 1.19150 0.95143 0.90534 0.98854 1.20654 0.87850 0.96764 0.91819 1.21253 1.11436 0.99048 0.94184 1.85231 1.19445 1.70240 1.21532 1.22195 0.91143 0.90414 1.01005 1.21579 1.02137 1.02202 0.90339 1.21922 0.90481 0.91210 1.01054 1.19069 1.10515 0.97327 0.89606 1.21089 0.75280 0.83283 0.85010 1.91025 1.39661 1.21877 1.87689 1.84444 1.78688 1.52050 1.16863 0.92775 0.93394 0.93868 0.96683 0.81364 0.79980 0.81556 0.71218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -63.03 13.96 21.45 0.30 -62.73 15 2 C 0.01 0.78 5.47 84.65 0.46 1.24 15 3 Si 0.94 48.06 27.47 68.60 1.88 49.94 15 4 H -0.28 -14.13 7.11 99.48 0.71 -13.42 15 5 H -0.28 -13.89 7.11 99.48 0.71 -13.18 15 6 H -0.24 -11.44 6.54 99.48 0.65 -10.79 15 7 C -0.47 -28.58 8.52 25.60 0.22 -28.36 15 8 H 0.02 1.10 7.98 -2.91 -0.02 1.08 15 9 C 0.00 0.03 3.11 29.10 0.09 0.12 15 10 C 0.03 1.36 5.13 -19.44 -0.10 1.26 15 11 C -0.15 -5.25 6.10 22.58 0.14 -5.11 15 12 S -0.12 -4.38 23.87 -56.49 -1.35 -5.73 15 13 C -0.03 -0.68 9.78 22.46 0.22 -0.46 15 14 C -0.14 -2.94 10.02 22.21 0.22 -2.71 15 15 C -0.03 -0.73 9.61 22.56 0.22 -0.51 15 16 C -0.16 -5.97 5.87 -20.12 -0.12 -6.09 15 17 C 0.51 19.61 8.20 70.34 0.58 20.19 15 18 O -0.51 -25.08 13.24 19.95 0.26 -24.82 15 19 O -0.51 -13.57 12.69 -56.21 -0.71 -14.28 15 20 H 0.26 16.28 8.31 -92.71 -0.77 15.51 15 21 H 0.05 2.42 5.59 -2.39 -0.01 2.40 15 22 H 0.04 2.31 5.25 -2.39 -0.01 2.29 15 23 H 0.07 2.64 9.07 73.35 0.67 3.31 15 24 H 0.17 3.00 8.06 -2.91 -0.02 2.98 15 25 H 0.18 1.95 8.06 -2.91 -0.02 1.92 15 26 H 0.17 3.16 7.62 -2.91 -0.02 3.14 15 27 H 0.43 7.81 9.11 -74.06 -0.67 7.14 15 Total: -1.00 -79.18 252.85 3.48 -75.70 By element: Atomic # 1 Polarization: 1.21 SS G_CDS: 1.17 Total: 2.38 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: 1.93 Total: -20.45 kcal Atomic # 7 Polarization: -63.03 SS G_CDS: 0.30 Total: -62.73 kcal Atomic # 8 Polarization: -38.65 SS G_CDS: -0.45 Total: -39.10 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 1.88 Total: 49.94 kcal Atomic # 16 Polarization: -4.38 SS G_CDS: -1.35 Total: -5.73 kcal Total: -79.18 3.48 -75.70 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307420082.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.213 kcal (2) G-P(sol) polarization free energy of solvation -79.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds