Wall clock time and date at job start Mon Mar 30 2020 05:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.20761 * 119.99610 * 2 1 4 4 C 1.50704 * 120.00330 * 179.97438 * 2 1 3 5 5 C 1.50697 * 109.47015 * 179.97438 * 4 2 1 6 6 C 1.38674 * 119.74315 * 270.01768 * 5 4 2 7 7 C 1.36575 * 120.42134 * 179.71431 * 6 5 4 8 8 C 1.40725 * 119.87895 * 0.52771 * 7 6 5 9 9 C 1.41334 * 120.25596 * 179.75727 * 8 7 6 10 10 H 1.08004 * 119.99786 * 154.37520 * 9 8 7 11 11 C 1.39939 * 120.00102 * 334.38323 * 9 8 7 12 12 N 1.30837 * 120.00058 * 334.66601 * 11 9 8 13 13 Si 1.86797 * 120.00055 * 154.66803 * 11 9 8 14 14 H 1.48507 * 109.47199 * 179.97438 * 13 11 9 15 15 H 1.48502 * 109.47129 * 299.99818 * 13 11 9 16 16 H 1.48502 * 109.47083 * 59.99793 * 13 11 9 17 17 C 1.40861 * 119.48572 * 359.48221 * 8 7 6 18 18 Cl 1.73605 * 120.20502 * 180.27362 * 17 8 7 19 19 C 1.37858 * 119.58860 * 0.25400 * 17 8 7 20 20 H 1.09009 * 109.46687 * 180.02562 * 1 2 3 21 21 H 1.08993 * 109.47296 * 299.99813 * 1 2 3 22 22 H 1.09002 * 109.46977 * 60.00575 * 1 2 3 23 23 H 1.09003 * 109.46819 * 60.00139 * 4 2 1 24 24 H 1.09001 * 109.46932 * 300.00321 * 4 2 1 25 25 H 1.07999 * 119.79122 * 359.97438 * 6 5 4 26 26 H 1.07993 * 120.06490 * 180.26080 * 7 6 5 27 27 H 0.97002 * 119.99394 * 354.20091 * 12 11 9 28 28 H 1.07997 * 119.95047 * 179.97438 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1107 1.0459 0.0000 4 6 2.2606 -1.3051 0.0006 5 6 3.7422 -1.0296 -0.0002 6 6 4.4180 -0.9043 -1.2046 7 6 5.7596 -0.6489 -1.2214 8 6 6.4645 -0.5227 -0.0100 9 6 7.8538 -0.2635 -0.0182 10 1 8.3159 0.2305 0.8238 11 6 8.6306 -0.6468 -1.1172 12 7 8.2411 -1.6352 -1.8808 13 14 10.2238 0.2527 -1.4941 14 1 10.8544 -0.3414 -2.7003 15 1 9.9351 1.6881 -1.7420 16 1 11.1488 0.1261 -0.3393 17 6 5.7735 -0.6509 1.2108 18 17 6.6233 -0.4916 2.7162 19 6 4.4183 -0.9033 1.2027 20 1 -0.3633 -1.0278 0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 1.9973 -1.8770 -0.8892 24 1 1.9972 -1.8763 0.8908 25 1 3.8793 -1.0051 -2.1352 26 1 6.2793 -0.5482 -2.1627 27 1 7.4598 -2.1565 -1.6384 28 1 3.8828 -1.0031 2.1352 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307424924.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:21 Heat of formation + Delta-G solvation = -48.133463 kcal Electronic energy + Delta-G solvation = -14211.331613 eV Core-core repulsion = 11638.084834 eV Total energy + Delta-G solvation = -2573.246779 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.19714 -37.68819 -35.07756 -34.28345 -31.59283 -29.91751 -29.41119 -27.37398 -24.16773 -21.26434 -20.73691 -19.10873 -18.04862 -15.41733 -15.34130 -15.21647 -14.61103 -14.34011 -13.89423 -13.86777 -12.63414 -12.56740 -12.36513 -12.17903 -12.05820 -11.65925 -11.27678 -11.16943 -10.76098 -10.43630 -10.26722 -10.13439 -9.83679 -9.36603 -9.28271 -8.97563 -7.68300 -7.55724 -7.23174 -4.51489 2.36056 2.58737 2.68038 3.14411 3.22344 3.35052 3.64041 3.97621 4.31480 4.62420 5.17704 5.34504 5.37096 5.49453 5.71015 5.72917 6.03583 6.05823 6.16512 6.29974 6.79392 6.92400 7.21414 7.42365 7.53973 7.69480 7.80848 7.94972 8.00867 8.13682 8.57714 8.73763 9.95279 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.029964 B = 0.007445 C = 0.006462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.218686 B = 3759.895416 C = 4332.220899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.343 3.657 3 O -0.445 6.445 4 C -0.103 4.103 5 C -0.215 4.215 6 C -0.065 4.065 7 C -0.208 4.208 8 C 0.104 3.896 9 C -0.500 4.500 10 H 0.086 0.914 11 C 0.039 3.961 12 N -0.788 5.788 13 Si 1.065 2.935 14 H -0.273 1.273 15 H -0.273 1.273 16 H -0.274 1.274 17 C -0.143 4.143 18 Cl -0.118 7.118 19 C -0.052 4.052 20 H 0.077 0.923 21 H 0.085 0.915 22 H 0.085 0.915 23 H 0.090 0.910 24 H 0.089 0.911 25 H 0.091 0.909 26 H 0.111 0.889 27 H 0.300 0.700 28 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.422 -0.756 1.482 8.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.218 3.782 3 O -0.317 6.317 4 C -0.140 4.140 5 C -0.216 4.216 6 C -0.083 4.083 7 C -0.228 4.228 8 C 0.100 3.900 9 C -0.527 4.527 10 H 0.104 0.896 11 C -0.184 4.184 12 N -0.411 5.411 13 Si 0.888 3.112 14 H -0.198 1.198 15 H -0.198 1.198 16 H -0.199 1.199 17 C -0.170 4.170 18 Cl -0.090 7.090 19 C -0.071 4.071 20 H 0.096 0.904 21 H 0.103 0.897 22 H 0.103 0.897 23 H 0.108 0.892 24 H 0.107 0.893 25 H 0.109 0.891 26 H 0.129 0.871 27 H 0.114 0.886 28 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.779 -0.150 0.487 6.798 hybrid contribution -1.423 -0.192 1.264 1.913 sum -8.201 -0.342 1.751 8.393 Atomic orbital electron populations 1.22297 0.95717 1.03991 1.04113 1.24886 0.91003 0.91348 0.71002 1.90423 1.71852 1.35080 1.34370 1.20794 0.94021 0.96015 1.03217 1.18445 0.92638 1.17677 0.92869 1.20199 0.94439 0.98206 0.95505 1.20799 0.93712 1.10944 0.97325 1.17461 0.93725 0.89363 0.89443 1.20703 0.92865 1.33820 1.05333 0.89570 1.27095 1.04459 0.95140 0.91681 1.70467 1.23694 1.11105 1.35810 0.83639 0.73631 0.76496 0.77457 1.19769 1.19818 1.19914 1.20635 0.92148 1.19182 0.85068 1.98200 1.79396 1.97116 1.34263 1.20211 0.92138 0.98511 0.96237 0.90395 0.89682 0.89668 0.89163 0.89290 0.89089 0.87076 0.88616 0.88574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.10 10.33 36.00 0.37 -1.73 15 2 C 0.34 5.35 7.26 -29.03 -0.21 5.13 15 3 O -0.45 -9.19 16.77 6.00 0.10 -9.08 15 4 C -0.10 -1.60 5.67 -29.03 -0.16 -1.77 15 5 C -0.21 -4.52 4.40 -104.34 -0.46 -4.98 15 6 C -0.06 -1.46 9.62 -40.02 -0.38 -1.85 15 7 C -0.21 -5.26 7.90 -39.24 -0.31 -5.57 15 8 C 0.10 2.75 5.30 -106.79 -0.57 2.18 15 9 C -0.50 -13.25 8.46 -37.77 -0.32 -13.57 15 10 H 0.09 2.28 7.19 -52.48 -0.38 1.90 15 11 C 0.04 0.98 4.94 -17.34 -0.09 0.89 15 12 N -0.79 -20.49 12.32 55.55 0.68 -19.80 15 13 Si 1.06 21.56 30.00 -169.99 -5.10 16.46 15 14 H -0.27 -5.44 7.11 56.52 0.40 -5.04 15 15 H -0.27 -5.38 7.11 56.52 0.40 -4.98 15 16 H -0.27 -5.30 7.11 56.52 0.40 -4.90 15 17 C -0.14 -3.55 6.38 -38.73 -0.25 -3.80 15 18 Cl -0.12 -2.67 27.61 -51.86 -1.43 -4.11 15 19 C -0.05 -1.17 9.47 -39.60 -0.37 -1.55 15 20 H 0.08 0.60 8.00 -51.92 -0.42 0.19 15 21 H 0.08 0.82 8.14 -51.93 -0.42 0.39 15 22 H 0.08 0.82 8.14 -51.93 -0.42 0.39 15 23 H 0.09 1.19 8.08 -51.93 -0.42 0.78 15 24 H 0.09 1.18 8.08 -51.93 -0.42 0.76 15 25 H 0.09 1.82 8.06 -52.49 -0.42 1.39 15 26 H 0.11 2.87 6.49 -52.49 -0.34 2.53 15 27 H 0.30 7.97 6.68 -40.82 -0.27 7.70 15 28 H 0.10 1.95 8.06 -52.49 -0.42 1.53 15 LS Contribution 264.66 15.07 3.99 3.99 Total: -1.00 -29.27 264.66 -7.24 -36.51 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -2.73 Total: 2.65 kcal Atomic # 6 Polarization: -23.86 SS G_CDS: -2.75 Total: -26.61 kcal Atomic # 7 Polarization: -20.49 SS G_CDS: 0.68 Total: -19.80 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.10 Total: -9.08 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.10 Total: 16.46 kcal Atomic # 17 Polarization: -2.67 SS G_CDS: -1.43 Total: -4.11 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -29.27 -7.24 -36.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307424924.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.622 kcal (2) G-P(sol) polarization free energy of solvation -29.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds