Wall clock time and date at job start Mon Mar 30 2020 05:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99499 * 2 1 4 4 H 1.48497 * 109.47112 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47189 * 300.00181 * 3 2 1 6 6 H 1.48497 * 109.47204 * 60.00165 * 3 2 1 7 7 C 1.37873 * 120.00585 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00272 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99982 * 359.97438 * 7 2 1 10 10 C 1.50701 * 109.47088 * 180.02562 * 9 7 2 11 11 C 1.38670 * 119.77588 * 90.00161 * 10 9 7 12 12 C 1.37707 * 120.37888 * 179.97438 * 11 10 9 13 13 C 1.39809 * 119.92506 * 359.97438 * 12 11 10 14 14 C 1.47240 * 120.22128 * 179.97438 * 13 12 11 15 15 O 1.21535 * 120.00180 * 180.02562 * 14 13 12 16 16 O 1.34783 * 119.99660 * 0.02562 * 14 13 12 17 17 C 1.40495 * 119.56200 * 0.02562 * 13 12 11 18 18 S 1.76200 * 120.18946 * 179.72600 * 17 13 12 19 19 C 1.37900 * 119.77193 * 269.95435 * 10 9 7 20 20 H 0.96995 * 120.00707 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46723 * 59.99949 * 9 7 2 22 22 H 1.09001 * 109.46944 * 300.00697 * 9 7 2 23 23 H 1.07999 * 119.80784 * 359.97438 * 11 10 9 24 24 H 1.07998 * 120.03421 * 179.97438 * 12 11 10 25 25 H 0.96697 * 116.99420 * 179.97438 * 16 14 13 26 26 H 1.40999 * 100.00098 * 89.99920 * 18 17 13 27 27 H 1.07995 * 119.96888 * 0.03016 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2306 -3.6445 -0.0005 11 6 2.6782 -4.1679 1.2031 12 6 3.5727 -5.2148 1.2176 13 6 4.0334 -5.7552 0.0133 14 6 4.9904 -6.8742 0.0212 15 8 5.3886 -7.3407 -1.0281 16 8 5.4246 -7.3813 1.1921 17 6 3.5782 -5.2227 -1.2045 18 16 4.1536 -5.8864 -2.7320 19 6 2.6749 -4.1655 -1.1975 20 1 -0.4851 0.8399 0.0004 21 1 0.6242 -2.5567 -0.8903 22 1 0.6248 -2.5571 0.8896 23 1 2.3231 -3.7521 2.1344 24 1 3.9179 -5.6178 2.1582 25 1 6.0520 -8.1156 1.1466 26 1 3.1812 -6.8846 -2.9470 27 1 2.3211 -3.7521 -2.1303 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307425018.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:36 Heat of formation + Delta-G solvation = -64.577093 kcal Electronic energy + Delta-G solvation = -14001.637387 eV Core-core repulsion = 11429.721266 eV Total energy + Delta-G solvation = -2571.916122 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.045 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.13456 -38.42527 -35.88764 -33.67072 -31.66573 -30.76421 -27.81585 -24.46943 -22.74911 -22.03558 -20.62172 -17.93165 -17.52858 -16.64566 -16.42850 -15.48069 -14.98637 -14.90651 -14.37735 -14.03993 -13.44919 -12.84765 -12.78140 -12.15765 -11.77349 -11.52650 -11.33305 -11.12523 -10.80815 -10.73815 -10.57227 -10.32317 -9.81930 -9.60980 -8.63861 -8.54751 -8.25794 -7.29395 -6.17106 -4.22248 0.82048 1.47256 1.97170 2.84801 2.88394 3.19166 3.23867 3.32246 3.37238 4.07152 4.37138 5.02807 5.18667 5.28291 5.46062 5.72505 5.75855 5.96643 6.24103 6.42796 6.57232 6.67013 6.80736 7.14940 7.35583 7.53502 7.77983 8.07486 8.12306 8.82813 9.43109 10.92789 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.035132 B = 0.006020 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.811353 B = 4649.817185 C = 4948.432792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.517 4.517 8 H 0.060 0.940 9 C 0.042 3.958 10 C 0.000 4.000 11 C -0.116 4.116 12 C -0.066 4.066 13 C -0.127 4.127 14 C 0.516 3.484 15 O -0.486 6.486 16 O -0.520 6.520 17 C -0.050 4.050 18 S -0.128 6.128 19 C -0.089 4.089 20 H 0.264 0.736 21 H 0.035 0.965 22 H 0.036 0.964 23 H 0.134 0.866 24 H 0.135 0.865 25 H 0.408 0.592 26 H 0.095 0.905 27 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.318 -11.532 1.436 13.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.555 4.555 8 H 0.079 0.921 9 C 0.005 3.995 10 C -0.002 4.002 11 C -0.134 4.134 12 C -0.086 4.086 13 C -0.131 4.131 14 C 0.359 3.641 15 O -0.373 6.373 16 O -0.332 6.332 17 C -0.162 4.162 18 S 0.030 5.970 19 C -0.109 4.109 20 H 0.073 0.927 21 H 0.054 0.946 22 H 0.054 0.946 23 H 0.152 0.848 24 H 0.153 0.847 25 H 0.265 0.735 26 H 0.059 0.941 27 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.484 -11.416 0.320 13.133 hybrid contribution -0.147 0.220 0.821 0.862 sum 6.336 -11.196 1.141 12.915 Atomic orbital electron populations 1.69948 1.06077 1.27038 1.49903 1.24997 0.94906 0.99397 0.94807 0.86436 0.80181 0.83154 0.77731 1.19527 1.20801 1.20865 1.21025 0.93171 0.89431 1.51898 0.92142 1.18517 0.92469 0.89307 0.99162 1.21103 0.94065 0.93531 0.91497 1.21323 0.97262 0.95685 0.99088 1.21393 0.95265 0.95235 0.96673 1.18993 1.01641 0.98326 0.94171 1.20879 0.79914 0.82341 0.80978 1.91085 1.55429 1.59106 1.31692 1.84598 1.61042 1.51709 1.35890 1.21382 1.00855 1.00008 0.93950 1.86826 1.41617 1.45453 1.23055 1.21568 0.95581 0.94164 0.99617 0.92679 0.94641 0.94589 0.84793 0.84699 0.73463 0.94108 0.84146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.09 13.29 55.43 0.74 -24.36 15 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 15 3 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 15 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 15 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 7 C -0.52 -13.62 9.09 -34.44 -0.31 -13.93 15 8 H 0.06 1.59 7.74 -52.49 -0.41 1.19 15 9 C 0.04 1.00 5.09 -29.03 -0.15 0.85 15 10 C 0.00 0.00 5.07 -104.59 -0.53 -0.53 15 11 C -0.12 -1.99 9.67 -39.62 -0.38 -2.37 15 12 C -0.07 -1.01 9.61 -39.19 -0.38 -1.39 15 13 C -0.13 -2.09 5.89 -104.80 -0.62 -2.71 15 14 C 0.52 7.74 8.25 34.39 0.28 8.03 15 15 O -0.49 -8.14 14.56 -19.29 -0.28 -8.43 15 16 O -0.52 -5.88 12.68 -40.72 -0.52 -6.40 15 17 C -0.05 -0.87 6.16 -38.43 -0.24 -1.11 15 18 S -0.13 -2.10 22.71 -107.50 -2.44 -4.54 15 19 C -0.09 -1.65 9.43 -39.40 -0.37 -2.02 15 20 H 0.26 7.01 8.31 -40.82 -0.34 6.67 15 21 H 0.04 0.88 8.08 -51.93 -0.42 0.46 15 22 H 0.04 0.88 8.08 -51.93 -0.42 0.46 15 23 H 0.13 2.13 8.06 -52.49 -0.42 1.71 15 24 H 0.14 1.71 7.61 -52.49 -0.40 1.31 15 25 H 0.41 2.60 9.11 45.56 0.42 3.02 15 26 H 0.09 1.40 9.55 96.90 0.93 2.32 15 27 H 0.14 2.54 8.06 -52.49 -0.42 2.12 15 LS Contribution 262.40 15.07 3.95 3.95 Total: -1.00 -29.71 262.40 -6.64 -36.35 By element: Atomic # 1 Polarization: 1.61 SS G_CDS: -0.28 Total: 1.33 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: -2.79 Total: -13.62 kcal Atomic # 7 Polarization: -25.09 SS G_CDS: 0.74 Total: -24.36 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.80 Total: -14.82 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: -2.10 SS G_CDS: -2.44 Total: -4.54 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -29.71 -6.64 -36.35 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307425018.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.229 kcal (2) G-P(sol) polarization free energy of solvation -29.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds