Wall clock time and date at job start Mon Mar 30 2020 05:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99499 * 2 1 4 4 H 1.48497 * 109.47112 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47189 * 300.00181 * 3 2 1 6 6 H 1.48497 * 109.47204 * 60.00165 * 3 2 1 7 7 C 1.37873 * 120.00585 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00272 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99982 * 359.97438 * 7 2 1 10 10 C 1.50701 * 109.47088 * 180.02562 * 9 7 2 11 11 C 1.38670 * 119.77588 * 90.00161 * 10 9 7 12 12 C 1.37707 * 120.37888 * 179.97438 * 11 10 9 13 13 C 1.39809 * 119.92506 * 359.97438 * 12 11 10 14 14 C 1.47240 * 120.22128 * 179.97438 * 13 12 11 15 15 O 1.21535 * 120.00180 * 180.02562 * 14 13 12 16 16 O 1.34783 * 119.99660 * 0.02562 * 14 13 12 17 17 C 1.40495 * 119.56200 * 0.02562 * 13 12 11 18 18 S 1.76200 * 120.18946 * 179.72600 * 17 13 12 19 19 C 1.37900 * 119.77193 * 269.95435 * 10 9 7 20 20 H 0.96995 * 120.00707 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46723 * 59.99949 * 9 7 2 22 22 H 1.09001 * 109.46944 * 300.00697 * 9 7 2 23 23 H 1.07999 * 119.80784 * 359.97438 * 11 10 9 24 24 H 1.07998 * 120.03421 * 179.97438 * 12 11 10 25 25 H 0.96697 * 116.99420 * 179.97438 * 16 14 13 26 26 H 1.40999 * 100.00098 * 89.99920 * 18 17 13 27 27 H 1.07995 * 119.96888 * 0.03016 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2306 -3.6445 -0.0005 11 6 2.6782 -4.1679 1.2031 12 6 3.5727 -5.2148 1.2176 13 6 4.0334 -5.7552 0.0133 14 6 4.9904 -6.8742 0.0212 15 8 5.3886 -7.3407 -1.0281 16 8 5.4246 -7.3813 1.1921 17 6 3.5782 -5.2227 -1.2045 18 16 4.1536 -5.8864 -2.7320 19 6 2.6749 -4.1655 -1.1975 20 1 -0.4851 0.8399 0.0004 21 1 0.6242 -2.5567 -0.8903 22 1 0.6248 -2.5571 0.8896 23 1 2.3231 -3.7521 2.1344 24 1 3.9179 -5.6178 2.1582 25 1 6.0520 -8.1156 1.1466 26 1 3.1812 -6.8846 -2.9470 27 1 2.3211 -3.7521 -2.1303 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307425018.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:36 Heat of formation + Delta-G solvation = -82.737848 kcal Electronic energy + Delta-G solvation = -14002.424897 eV Core-core repulsion = 11429.721266 eV Total energy + Delta-G solvation = -2572.703631 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.045 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.31641 -39.74847 -36.94426 -35.52003 -33.35736 -32.11065 -29.53518 -26.13401 -24.17668 -23.48845 -21.96674 -19.09203 -18.78552 -18.46978 -17.87240 -16.76742 -16.54459 -16.32315 -15.83714 -15.36541 -14.77199 -14.52751 -14.12050 -13.72410 -13.36928 -13.34955 -12.69595 -12.48666 -12.46176 -12.38443 -11.89800 -11.76105 -11.55938 -11.49360 -10.60718 -9.96397 -9.76072 -8.57249 -8.21745 -6.33838 -0.50110 0.14269 0.66227 1.41597 1.43550 1.55062 1.60767 1.65011 2.12029 2.40644 2.74929 3.11502 3.75591 4.03984 4.09851 4.35252 4.42233 4.60925 4.90687 5.07772 5.19482 5.28072 5.33219 5.66010 5.72932 5.75280 5.82909 6.13338 6.78498 7.09040 7.35369 8.88185 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.035132 B = 0.006020 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.811353 B = 4649.817185 C = 4948.432792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.010 3.990 3 Si 0.962 3.038 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.276 1.276 7 C -0.529 4.529 8 H 0.057 0.943 9 C 0.051 3.949 10 C -0.024 4.024 11 C -0.114 4.114 12 C -0.049 4.049 13 C -0.129 4.129 14 C 0.524 3.476 15 O -0.505 6.505 16 O -0.506 6.506 17 C -0.058 4.058 18 S -0.135 6.135 19 C -0.096 4.096 20 H 0.266 0.734 21 H 0.012 0.988 22 H 0.020 0.980 23 H 0.145 0.855 24 H 0.171 0.829 25 H 0.432 0.568 26 H 0.111 0.889 27 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.979 -12.431 2.405 14.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.189 4.189 3 Si 0.787 3.213 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.202 1.202 7 C -0.567 4.567 8 H 0.075 0.925 9 C 0.014 3.986 10 C -0.026 4.026 11 C -0.132 4.132 12 C -0.068 4.068 13 C -0.133 4.133 14 C 0.367 3.633 15 O -0.395 6.395 16 O -0.321 6.321 17 C -0.170 4.170 18 S 0.023 5.977 19 C -0.116 4.116 20 H 0.075 0.925 21 H 0.030 0.970 22 H 0.038 0.962 23 H 0.163 0.837 24 H 0.188 0.812 25 H 0.294 0.706 26 H 0.076 0.924 27 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 8.164 -12.343 1.307 14.856 hybrid contribution -0.625 0.360 0.545 0.904 sum 7.539 -11.983 1.852 14.278 Atomic orbital electron populations 1.70055 1.07523 1.27968 1.51058 1.25825 0.95685 1.02856 0.94519 0.85440 0.79012 0.79039 0.77849 1.18990 1.20500 1.20175 1.21350 0.93193 0.90904 1.51261 0.92496 1.18242 0.92812 0.90411 0.97151 1.20767 0.94936 0.93685 0.93238 1.21437 0.97348 0.96039 0.98404 1.21652 0.93684 0.93801 0.97711 1.19295 1.01392 0.98564 0.94031 1.20521 0.79442 0.81827 0.81528 1.91087 1.56030 1.59627 1.32731 1.84521 1.61407 1.52549 1.33580 1.21429 1.00698 0.99822 0.95067 1.86804 1.42075 1.46026 1.22828 1.21470 0.96267 0.94870 0.99022 0.92505 0.97015 0.96199 0.83738 0.81202 0.70583 0.92403 0.84829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.20 13.29 21.45 0.28 -52.92 15 2 C 0.01 0.54 5.46 84.65 0.46 1.00 15 3 Si 0.96 42.65 29.54 68.60 2.03 44.67 15 4 H -0.27 -11.45 7.11 99.48 0.71 -10.74 15 5 H -0.28 -12.18 7.11 99.48 0.71 -11.47 15 6 H -0.28 -11.88 7.11 99.48 0.71 -11.18 15 7 C -0.53 -28.36 9.09 25.60 0.23 -28.13 15 8 H 0.06 3.02 7.74 -2.91 -0.02 3.00 15 9 C 0.05 2.49 5.09 29.10 0.15 2.64 15 10 C -0.02 -0.97 5.07 -19.84 -0.10 -1.07 15 11 C -0.11 -3.78 9.67 22.25 0.22 -3.57 15 12 C -0.05 -1.36 9.61 22.52 0.22 -1.14 15 13 C -0.13 -3.93 5.89 -19.98 -0.12 -4.04 15 14 C 0.52 14.07 8.25 70.19 0.58 14.65 15 15 O -0.51 -15.67 14.56 19.72 0.29 -15.39 15 16 O -0.51 -9.26 12.68 -56.94 -0.72 -9.98 15 17 C -0.06 -1.97 6.16 23.02 0.14 -1.83 15 18 S -0.14 -4.30 22.71 -56.49 -1.28 -5.58 15 19 C -0.10 -3.59 9.43 22.39 0.21 -3.37 15 20 H 0.27 14.36 8.31 -92.71 -0.77 13.59 15 21 H 0.01 0.61 8.08 -2.39 -0.02 0.59 15 22 H 0.02 1.01 8.08 -2.39 -0.02 0.99 15 23 H 0.14 4.40 8.06 -2.91 -0.02 4.38 15 24 H 0.17 3.53 7.61 -2.91 -0.02 3.50 15 25 H 0.43 3.60 9.11 -74.06 -0.67 2.93 15 26 H 0.11 3.14 9.55 73.80 0.70 3.84 15 27 H 0.13 5.03 8.06 -2.91 -0.02 5.00 15 Total: -1.00 -63.45 262.40 3.83 -59.62 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: 1.25 Total: 4.44 kcal Atomic # 6 Polarization: -26.84 SS G_CDS: 1.99 Total: -24.86 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: 0.28 Total: -52.92 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -0.43 Total: -25.37 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.67 kcal Atomic # 16 Polarization: -4.30 SS G_CDS: -1.28 Total: -5.58 kcal Total: -63.45 3.83 -59.62 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307425018.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.121 kcal (2) G-P(sol) polarization free energy of solvation -63.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds