Wall clock time and date at job start Mon Mar 30 2020 05:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.47202 * 2 1 4 4 O 1.21342 * 120.00035 * 0.02562 * 3 2 1 5 5 C 1.46501 * 119.99993 * 179.97438 * 3 2 1 6 6 C 1.39829 * 120.59821 * 354.40384 * 5 3 2 7 7 Cl 1.73605 * 120.01229 * 359.97438 * 6 5 3 8 8 C 1.38228 * 119.97944 * 179.97438 * 6 5 3 9 9 C 1.38638 * 121.29140 * 359.97438 * 8 6 5 10 10 C 1.37555 * 121.25104 * 359.72123 * 9 8 6 11 11 C 1.40803 * 119.89865 * 0.55741 * 10 9 8 12 12 C 1.40716 * 120.61232 * 179.72135 * 11 10 9 13 13 H 1.08003 * 119.99794 * 145.18763 * 12 11 10 14 14 C 1.40388 * 119.99944 * 324.91886 * 12 11 10 15 15 N 1.30561 * 120.00113 * 350.57028 * 14 12 11 16 16 Si 1.86801 * 119.99963 * 170.58014 * 14 12 11 17 17 H 1.48505 * 109.47197 * 59.99447 * 16 14 12 18 18 H 1.48502 * 109.47372 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47241 * 299.99511 * 16 14 12 20 20 H 1.08998 * 109.47091 * 179.97438 * 1 2 3 21 21 H 1.09005 * 109.46529 * 299.99744 * 1 2 3 22 22 H 1.08997 * 109.47009 * 59.99339 * 1 2 3 23 23 H 1.09004 * 109.47025 * 240.00430 * 2 1 3 24 24 H 1.09005 * 109.47584 * 120.00771 * 2 1 3 25 25 H 1.08004 * 119.35415 * 179.97438 * 8 6 5 26 26 H 1.08001 * 119.37354 * 180.02562 * 9 8 6 27 27 H 1.08001 * 120.05296 * 180.30770 * 10 9 8 28 28 H 0.97003 * 120.00406 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2439 2.3431 0.0005 5 6 3.4727 1.6885 0.0006 6 6 4.3913 0.6409 0.1185 7 17 3.8287 -0.9948 0.2667 8 6 5.7475 0.9080 0.1170 9 6 6.2261 2.2038 -0.0003 10 6 5.3691 3.2725 -0.1255 11 6 3.9772 3.0598 -0.1240 12 6 3.0867 4.1426 -0.2452 13 1 2.1581 4.0205 -0.7830 14 6 3.4029 5.3800 0.3376 15 7 4.4254 5.4799 1.1434 16 14 2.3605 6.8836 -0.0394 17 1 0.9597 6.6341 0.3858 18 1 2.8990 8.0563 0.6956 19 1 2.3937 7.1557 -1.4989 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3632 0.5138 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 1.8933 -0.5138 -0.8901 24 1 1.8934 -0.5140 0.8899 25 1 6.4481 0.0911 0.2091 26 1 7.2921 2.3771 0.0017 27 1 5.7631 4.2735 -0.2206 28 1 4.6441 6.3350 1.5458 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307433160.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:29 Heat of formation + Delta-G solvation = -29.306657 kcal Electronic energy + Delta-G solvation = -14624.142067 eV Core-core repulsion = 12051.711680 eV Total energy + Delta-G solvation = -2572.430387 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.61942 -36.77429 -35.80261 -33.84407 -32.03721 -30.05264 -29.53427 -26.00631 -24.13925 -21.60029 -20.86352 -18.70916 -17.61265 -15.64836 -15.41659 -14.69659 -14.61728 -14.35974 -13.45432 -13.07004 -12.90481 -12.51683 -11.98558 -11.91389 -11.69664 -11.58665 -11.28679 -11.18419 -10.83665 -10.60444 -10.31487 -10.03551 -9.99592 -9.43469 -9.12220 -8.27470 -7.64339 -7.48571 -7.05236 -4.64180 1.94787 2.57750 2.94946 2.98211 3.04451 3.10231 3.72769 3.80643 4.40801 5.16340 5.31920 5.73718 5.76790 5.99764 6.06107 6.22365 6.36129 6.53753 6.61547 6.69878 6.76973 6.85676 6.92441 7.15033 7.31835 7.64360 7.76359 7.86471 8.36425 8.51970 8.62357 8.96084 9.88673 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.025140 B = 0.010277 C = 0.007480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.473602 B = 2723.899029 C = 3742.309289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.175 4.175 3 C 0.391 3.609 4 O -0.474 6.474 5 C -0.293 4.293 6 C 0.052 3.948 7 Cl -0.110 7.110 8 C -0.243 4.243 9 C -0.079 4.079 10 C -0.153 4.153 11 C 0.152 3.848 12 C -0.401 4.401 13 H 0.106 0.894 14 C 0.069 3.931 15 N -0.776 5.776 16 Si 0.922 3.078 17 H -0.259 1.259 18 H -0.276 1.276 19 H -0.260 1.260 20 H 0.047 0.953 21 H 0.054 0.946 22 H 0.053 0.947 23 H 0.088 0.912 24 H 0.096 0.904 25 H 0.102 0.898 26 H 0.100 0.900 27 H 0.120 0.880 28 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.287 -4.588 -1.359 4.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.213 4.213 3 C 0.274 3.726 4 O -0.354 6.354 5 C -0.296 4.296 6 C 0.026 3.974 7 Cl -0.082 7.082 8 C -0.263 4.263 9 C -0.098 4.098 10 C -0.172 4.172 11 C 0.147 3.853 12 C -0.427 4.427 13 H 0.124 0.876 14 C -0.152 4.152 15 N -0.400 5.400 16 Si 0.746 3.254 17 H -0.183 1.183 18 H -0.201 1.201 19 H -0.184 1.184 20 H 0.066 0.934 21 H 0.073 0.927 22 H 0.072 0.928 23 H 0.106 0.894 24 H 0.114 0.886 25 H 0.120 0.880 26 H 0.118 0.882 27 H 0.138 0.862 28 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.622 -4.096 -1.184 4.309 hybrid contribution -0.151 0.328 0.074 0.369 sum -0.773 -3.768 -1.110 4.004 Atomic orbital electron populations 1.21630 0.95748 1.00115 1.02378 1.22671 0.96249 0.98057 1.04300 1.21745 0.88280 0.89580 0.72969 1.90424 1.58403 1.47025 1.39507 1.20933 0.92924 0.92950 1.22819 1.20882 0.93756 0.81758 1.01030 1.98259 1.89201 1.24597 1.96109 1.20089 0.92259 0.96721 1.17267 1.20638 0.98121 0.92257 0.98799 1.21403 0.93040 0.97920 1.04887 1.18528 0.92011 0.89381 0.85338 1.20116 1.04914 0.92463 1.25244 0.87636 1.26229 0.95048 1.00846 0.93085 1.69661 1.23216 1.27765 1.19358 0.86105 0.80917 0.78454 0.79961 1.18264 1.20107 1.18411 0.93429 0.92714 0.92813 0.89383 0.88564 0.87985 0.88157 0.86177 0.90025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.20 37.16 0.34 -2.01 15 2 C -0.18 -3.25 4.26 -27.88 -0.12 -3.37 15 3 C 0.39 9.08 7.07 -30.98 -0.22 8.86 15 4 O -0.47 -12.14 13.45 5.50 0.07 -12.07 15 5 C -0.29 -7.14 6.06 -102.58 -0.62 -7.76 15 6 C 0.05 1.14 6.35 -38.99 -0.25 0.89 15 7 Cl -0.11 -1.98 23.11 -51.86 -1.20 -3.18 15 8 C -0.24 -5.12 9.77 -39.44 -0.39 -5.51 15 9 C -0.08 -1.70 9.96 -39.68 -0.40 -2.10 15 10 C -0.15 -3.71 8.64 -38.86 -0.34 -4.05 15 11 C 0.15 3.94 5.63 -104.60 -0.59 3.35 15 12 C -0.40 -10.51 7.77 -37.84 -0.29 -10.80 15 13 H 0.11 2.84 6.10 -52.48 -0.32 2.52 15 14 C 0.07 1.68 5.26 -17.28 -0.09 1.59 15 15 N -0.78 -19.02 11.24 55.57 0.62 -18.39 15 16 Si 0.92 18.48 29.57 -169.99 -5.03 13.45 15 17 H -0.26 -5.32 7.11 56.52 0.40 -4.92 15 18 H -0.28 -5.26 7.11 56.52 0.40 -4.86 15 19 H -0.26 -5.09 7.11 56.52 0.40 -4.69 15 20 H 0.05 0.65 8.14 -51.93 -0.42 0.23 15 21 H 0.05 0.94 8.10 -51.93 -0.42 0.52 15 22 H 0.05 0.91 8.10 -51.93 -0.42 0.49 15 23 H 0.09 1.54 6.95 -51.93 -0.36 1.18 15 24 H 0.10 1.72 5.96 -51.93 -0.31 1.41 15 25 H 0.10 1.90 8.06 -52.48 -0.42 1.48 15 26 H 0.10 1.86 8.06 -52.49 -0.42 1.43 15 27 H 0.12 2.92 6.70 -52.49 -0.35 2.57 15 28 H 0.29 6.38 8.29 -40.82 -0.34 6.04 15 LS Contribution 253.12 15.07 3.81 3.81 Total: -1.00 -26.62 253.12 -7.25 -33.88 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -2.59 Total: 3.39 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: -2.96 Total: -20.90 kcal Atomic # 7 Polarization: -19.02 SS G_CDS: 0.62 Total: -18.39 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.07 Total: -12.07 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Atomic # 17 Polarization: -1.98 SS G_CDS: -1.20 Total: -3.18 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -26.62 -7.25 -33.88 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307433160.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.571 kcal (2) G-P(sol) polarization free energy of solvation -26.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds