Wall clock time and date at job start Mon Mar 30 2020 05:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.47202 * 2 1 4 4 O 1.21342 * 120.00035 * 0.02562 * 3 2 1 5 5 C 1.46501 * 119.99993 * 179.97438 * 3 2 1 6 6 C 1.39829 * 120.59821 * 354.40384 * 5 3 2 7 7 Cl 1.73605 * 120.01229 * 359.97438 * 6 5 3 8 8 C 1.38228 * 119.97944 * 179.97438 * 6 5 3 9 9 C 1.38638 * 121.29140 * 359.97438 * 8 6 5 10 10 C 1.37555 * 121.25104 * 359.72123 * 9 8 6 11 11 C 1.40803 * 119.89865 * 0.55741 * 10 9 8 12 12 C 1.40716 * 120.61232 * 179.72135 * 11 10 9 13 13 H 1.08003 * 119.99794 * 145.18763 * 12 11 10 14 14 C 1.40388 * 119.99944 * 324.91886 * 12 11 10 15 15 N 1.30561 * 120.00113 * 350.57028 * 14 12 11 16 16 Si 1.86801 * 119.99963 * 170.58014 * 14 12 11 17 17 H 1.48505 * 109.47197 * 59.99447 * 16 14 12 18 18 H 1.48502 * 109.47372 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47241 * 299.99511 * 16 14 12 20 20 H 1.08998 * 109.47091 * 179.97438 * 1 2 3 21 21 H 1.09005 * 109.46529 * 299.99744 * 1 2 3 22 22 H 1.08997 * 109.47009 * 59.99339 * 1 2 3 23 23 H 1.09004 * 109.47025 * 240.00430 * 2 1 3 24 24 H 1.09005 * 109.47584 * 120.00771 * 2 1 3 25 25 H 1.08004 * 119.35415 * 179.97438 * 8 6 5 26 26 H 1.08001 * 119.37354 * 180.02562 * 9 8 6 27 27 H 1.08001 * 120.05296 * 180.30770 * 10 9 8 28 28 H 0.97003 * 120.00406 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2439 2.3431 0.0005 5 6 3.4727 1.6885 0.0006 6 6 4.3913 0.6409 0.1185 7 17 3.8287 -0.9948 0.2667 8 6 5.7475 0.9080 0.1170 9 6 6.2261 2.2038 -0.0003 10 6 5.3691 3.2725 -0.1255 11 6 3.9772 3.0598 -0.1240 12 6 3.0867 4.1426 -0.2452 13 1 2.1581 4.0205 -0.7830 14 6 3.4029 5.3800 0.3376 15 7 4.4254 5.4799 1.1434 16 14 2.3605 6.8836 -0.0394 17 1 0.9597 6.6341 0.3858 18 1 2.8990 8.0563 0.6956 19 1 2.3937 7.1557 -1.4989 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3632 0.5138 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 1.8933 -0.5138 -0.8901 24 1 1.8934 -0.5140 0.8899 25 1 6.4481 0.0911 0.2091 26 1 7.2921 2.3771 0.0017 27 1 5.7631 4.2735 -0.2206 28 1 4.6441 6.3350 1.5458 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307433160.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:29 Heat of formation + Delta-G solvation = -42.607924 kcal Electronic energy + Delta-G solvation = -14624.718853 eV Core-core repulsion = 12051.711680 eV Total energy + Delta-G solvation = -2573.007173 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.40590 -38.55149 -37.42610 -35.63050 -33.59799 -31.84432 -31.28494 -27.78358 -25.78161 -23.30590 -22.60627 -20.44980 -19.43618 -17.42136 -17.14365 -16.32957 -16.25781 -16.11608 -15.13763 -14.79685 -14.61097 -14.16929 -13.64412 -13.53892 -13.38766 -13.14945 -12.91224 -12.76435 -12.43999 -12.20931 -12.07643 -11.72625 -11.61577 -11.19444 -10.64432 -10.07703 -9.42467 -9.28710 -8.83983 -6.53763 0.14557 0.82101 1.28646 1.34202 1.45375 1.47551 1.93806 2.15163 2.60428 3.46312 3.54993 4.26923 4.33373 4.39501 4.44608 4.72424 4.83753 4.95725 5.01760 5.10223 5.11693 5.15279 5.34475 5.38492 5.56246 5.87004 5.92617 6.07244 6.49495 6.65284 6.77367 7.16981 8.12549 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.025140 B = 0.010277 C = 0.007480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.473602 B = 2723.899029 C = 3742.309289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.166 4.166 3 C 0.380 3.620 4 O -0.508 6.508 5 C -0.321 4.321 6 C 0.047 3.953 7 Cl -0.072 7.072 8 C -0.238 4.238 9 C -0.070 4.070 10 C -0.178 4.178 11 C 0.123 3.877 12 C -0.440 4.440 13 H 0.085 0.915 14 C 0.035 3.965 15 N -0.803 5.803 16 Si 0.984 3.016 17 H -0.270 1.270 18 H -0.255 1.255 19 H -0.254 1.254 20 H 0.084 0.916 21 H 0.043 0.957 22 H 0.044 0.956 23 H 0.103 0.897 24 H 0.108 0.892 25 H 0.135 0.865 26 H 0.134 0.866 27 H 0.109 0.891 28 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.252 -6.089 -1.275 6.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.203 4.203 3 C 0.266 3.734 4 O -0.390 6.390 5 C -0.325 4.325 6 C 0.021 3.979 7 Cl -0.043 7.043 8 C -0.257 4.257 9 C -0.089 4.089 10 C -0.198 4.198 11 C 0.119 3.881 12 C -0.467 4.467 13 H 0.103 0.897 14 C -0.184 4.184 15 N -0.427 5.427 16 Si 0.804 3.196 17 H -0.195 1.195 18 H -0.179 1.179 19 H -0.178 1.178 20 H 0.103 0.897 21 H 0.062 0.938 22 H 0.064 0.936 23 H 0.121 0.879 24 H 0.126 0.874 25 H 0.153 0.847 26 H 0.152 0.848 27 H 0.127 0.873 28 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.059 -5.623 -1.099 5.730 hybrid contribution -0.251 0.576 0.062 0.632 sum -0.311 -5.047 -1.037 5.162 Atomic orbital electron populations 1.21624 0.94203 1.02205 1.01484 1.22636 0.97628 0.94720 1.05287 1.22426 0.87893 0.91422 0.71693 1.90403 1.58977 1.48632 1.40996 1.21309 0.94347 0.93373 1.23447 1.20980 0.93836 0.83269 0.99864 1.98259 1.88962 1.21251 1.95807 1.20523 0.92562 0.97409 1.15245 1.21032 0.99577 0.91824 0.96466 1.21387 0.92890 0.98449 1.07030 1.18940 0.93027 0.90410 0.85717 1.20122 1.04822 0.94278 1.27469 0.89707 1.26921 0.96197 1.02772 0.92466 1.69668 1.24319 1.28849 1.19868 0.85211 0.78491 0.75679 0.80181 1.19525 1.17902 1.17762 0.89726 0.93808 0.93648 0.87898 0.87438 0.84695 0.84777 0.87257 0.89121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.34 9.20 71.98 0.66 -3.68 15 2 C -0.17 -5.86 4.26 29.85 0.13 -5.73 15 3 C 0.38 17.85 7.07 27.84 0.20 18.04 15 4 O -0.51 -26.98 13.45 -3.22 -0.04 -27.03 15 5 C -0.32 -15.78 6.06 -18.54 -0.11 -15.89 15 6 C 0.05 1.98 6.35 22.65 0.14 2.12 15 7 Cl -0.07 -2.36 23.11 -2.72 -0.06 -2.42 15 8 C -0.24 -9.37 9.77 22.36 0.22 -9.15 15 9 C -0.07 -2.91 9.96 22.20 0.22 -2.69 15 10 C -0.18 -8.75 8.64 22.74 0.20 -8.55 15 11 C 0.12 6.59 5.63 -19.85 -0.11 6.48 15 12 C -0.44 -24.20 7.77 23.40 0.18 -24.02 15 13 H 0.08 4.87 6.10 -2.91 -0.02 4.85 15 14 C 0.03 1.73 5.26 85.41 0.45 2.18 15 15 N -0.80 -40.28 11.24 21.90 0.25 -40.03 15 16 Si 0.98 38.83 29.57 68.60 2.03 40.86 15 17 H -0.27 -11.07 7.11 99.48 0.71 -10.36 15 18 H -0.26 -9.10 7.11 99.48 0.71 -8.39 15 19 H -0.25 -9.63 7.11 99.48 0.71 -8.92 15 20 H 0.08 2.03 8.14 -2.39 -0.02 2.02 15 21 H 0.04 1.46 8.10 -2.38 -0.02 1.44 15 22 H 0.04 1.49 8.10 -2.39 -0.02 1.47 15 23 H 0.10 3.34 6.95 -2.38 -0.02 3.33 15 24 H 0.11 3.57 5.96 -2.38 -0.01 3.55 15 25 H 0.14 4.42 8.06 -2.91 -0.02 4.40 15 26 H 0.13 4.57 8.06 -2.91 -0.02 4.54 15 27 H 0.11 5.48 6.70 -2.91 -0.02 5.46 15 28 H 0.30 13.32 8.29 -92.71 -0.77 12.55 15 Total: -1.00 -59.10 253.12 5.52 -53.58 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: 1.18 Total: 15.94 kcal Atomic # 6 Polarization: -43.07 SS G_CDS: 2.17 Total: -40.90 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.25 Total: -40.03 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -0.04 Total: -27.03 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.86 kcal Atomic # 17 Polarization: -2.36 SS G_CDS: -0.06 Total: -2.42 kcal Total: -59.10 5.52 -53.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307433160.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.967 kcal (2) G-P(sol) polarization free energy of solvation -59.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds