Wall clock time and date at job start Mon Mar 30 2020 05:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30918 * 1 3 3 Si 1.86804 * 119.99887 * 2 1 4 4 H 1.48506 * 109.47010 * 275.41233 * 3 2 1 5 5 H 1.48494 * 109.47193 * 35.41576 * 3 2 1 6 6 H 1.48501 * 109.47024 * 155.41694 * 3 2 1 7 7 C 1.39820 * 120.00240 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99520 * 341.67205 * 7 2 1 9 9 C 1.41252 * 120.00137 * 161.67501 * 7 2 1 10 10 C 1.39993 * 120.03385 * 330.04900 * 9 7 2 11 11 C 1.40577 * 120.08147 * 179.97438 * 10 9 7 12 12 C 1.45670 * 129.15742 * 180.02562 * 11 10 9 13 13 F 1.35100 * 122.57694 * 359.95567 * 12 11 10 14 14 C 1.31810 * 114.84779 * 179.97438 * 12 11 10 15 15 S 1.75256 * 111.50013 * 0.02562 * 14 12 11 16 16 C 1.40062 * 119.06393 * 0.02562 * 11 10 9 17 17 C 1.40927 * 120.13555 * 0.02562 * 16 11 10 18 18 O 1.35915 * 119.63901 * 179.97438 * 17 16 11 19 19 C 1.36132 * 120.73364 * 359.97438 * 17 16 11 20 20 H 0.96996 * 119.99990 * 359.97438 * 1 2 3 21 21 H 1.08006 * 119.95859 * 0.26475 * 10 9 7 22 22 H 1.07993 * 124.25042 * 179.97438 * 14 12 11 23 23 H 0.96702 * 114.00047 * 89.99447 * 18 17 16 24 24 H 1.07997 * 119.97173 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2432 1.6178 0.0000 4 1 2.3763 2.1125 -1.3939 5 1 1.5025 2.6169 0.8113 6 1 3.5933 1.4099 0.5825 7 6 2.0083 -1.2108 -0.0005 8 1 1.5094 -2.1225 0.2932 9 6 3.3671 -1.2417 -0.3852 10 6 3.8533 -0.3150 -1.3150 11 6 5.2056 -0.3444 -1.6981 12 6 5.9145 0.5145 -2.6371 13 9 5.3072 1.5201 -3.3042 14 6 7.1939 0.2348 -2.7862 15 16 7.6757 -1.1216 -1.7865 16 6 6.0507 -1.3104 -1.1374 17 6 5.5450 -2.2367 -0.2035 18 8 6.3740 -3.1701 0.3339 19 6 4.2352 -2.2069 0.1665 20 1 -0.4850 0.8400 0.0004 21 1 3.1898 0.4265 -1.7351 22 1 7.8613 0.7733 -3.4427 23 1 6.8124 -2.8851 1.1473 24 1 3.8608 -2.9224 0.8836 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307461047.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:41 Heat of formation + Delta-G solvation = -73.789871 kcal Electronic energy + Delta-G solvation = -14210.683013 eV Core-core repulsion = 11514.907090 eV Total energy + Delta-G solvation = -2695.775923 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.88699 -40.53302 -38.05322 -36.46856 -34.65465 -31.35836 -30.33528 -27.34930 -24.25838 -23.55561 -21.63121 -20.04142 -19.11408 -18.02013 -17.46004 -17.10325 -16.82553 -16.72684 -16.33472 -15.62842 -15.16985 -14.82939 -14.18082 -13.87098 -13.48259 -13.32665 -12.97167 -12.78508 -12.55734 -12.01438 -11.77343 -11.59911 -11.51372 -11.11275 -10.14174 -9.57510 -9.04175 -8.52687 -6.61034 -0.25562 0.37775 0.64751 1.03054 1.09305 1.23192 1.34683 1.39952 2.03289 2.30669 3.06042 3.15181 3.51415 3.87076 4.18602 4.33209 4.49526 4.70607 4.84459 5.02332 5.19767 5.31103 5.44989 5.66274 5.80349 6.15787 6.43282 6.63404 6.88513 8.02588 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.026106 B = 0.011189 C = 0.008300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.294042 B = 2501.826534 C = 3372.649560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.058 3.942 3 Si 0.953 3.047 4 H -0.270 1.270 5 H -0.268 1.268 6 H -0.253 1.253 7 C -0.464 4.464 8 H 0.075 0.925 9 C 0.093 3.907 10 C -0.245 4.245 11 C -0.056 4.056 12 C 0.051 3.949 13 F -0.139 7.139 14 C -0.219 4.219 15 S 0.159 5.841 16 C -0.269 4.269 17 C 0.173 3.827 18 O -0.499 6.499 19 C -0.192 4.192 20 H 0.298 0.702 21 H 0.097 0.903 22 H 0.208 0.792 23 H 0.406 0.594 24 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.799 1.380 -0.765 12.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.160 4.160 3 Si 0.777 3.223 4 H -0.196 1.196 5 H -0.194 1.194 6 H -0.177 1.177 7 C -0.493 4.493 8 H 0.093 0.907 9 C 0.089 3.911 10 C -0.268 4.268 11 C -0.063 4.063 12 C 0.018 3.982 13 F -0.118 7.118 14 C -0.354 4.354 15 S 0.420 5.580 16 C -0.384 4.384 17 C 0.125 3.875 18 O -0.312 6.312 19 C -0.213 4.213 20 H 0.109 0.891 21 H 0.115 0.885 22 H 0.225 0.775 23 H 0.265 0.735 24 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 13.697 0.436 -1.042 13.743 hybrid contribution -1.782 1.825 -0.017 2.551 sum 11.914 2.260 -1.059 12.173 Atomic orbital electron populations 1.69721 1.08846 1.31882 1.34922 1.26680 0.95268 1.03737 0.90290 0.85636 0.79954 0.77479 0.79209 1.19588 1.19428 1.17693 1.19473 0.93751 0.96181 1.39872 0.90664 1.17445 0.92902 0.91118 0.89627 1.20784 0.93705 1.06654 1.05630 1.18926 0.94578 0.95582 0.97173 1.17547 0.91634 0.90686 0.98347 1.91422 1.84066 1.57779 1.78569 1.25242 0.97426 1.04953 1.07807 1.83230 1.05338 1.28663 1.40818 1.22519 0.99276 1.05106 1.11465 1.17093 0.89166 0.87757 0.93493 1.84736 1.61456 1.39314 1.45672 1.21221 0.92624 1.03145 1.04349 0.89078 0.88492 0.77549 0.73521 0.85042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.74 13.93 21.81 0.30 -43.44 14 2 C 0.06 3.02 5.39 85.21 0.46 3.48 14 3 Si 0.95 42.88 24.52 68.60 1.68 44.56 14 4 H -0.27 -12.22 6.71 99.48 0.67 -11.55 14 5 H -0.27 -11.07 7.11 99.48 0.71 -10.37 14 6 H -0.25 -11.64 6.87 99.48 0.68 -10.96 14 7 C -0.46 -24.86 9.54 23.39 0.22 -24.63 14 8 H 0.08 4.22 8.06 -2.91 -0.02 4.20 14 9 C 0.09 4.64 5.09 -21.42 -0.11 4.53 14 10 C -0.25 -12.08 7.24 23.27 0.17 -11.91 14 11 C -0.06 -2.47 6.03 -20.35 -0.12 -2.59 14 12 C 0.05 1.98 7.57 23.42 0.18 2.16 14 13 F -0.14 -5.52 17.32 44.97 0.78 -4.74 14 14 C -0.22 -6.57 11.00 67.05 0.74 -5.84 14 15 S 0.16 4.71 23.20 -56.49 -1.31 3.40 14 16 C -0.27 -10.63 6.46 23.37 0.15 -10.48 14 17 C 0.17 6.79 6.67 22.44 0.15 6.94 14 18 O -0.50 -15.67 13.45 -92.60 -1.25 -16.92 14 19 C -0.19 -8.42 9.62 22.47 0.22 -8.20 14 20 H 0.30 14.13 8.30 -92.71 -0.77 13.36 14 21 H 0.10 4.94 4.69 -2.91 -0.01 4.92 14 22 H 0.21 4.41 8.06 -2.91 -0.02 4.39 14 23 H 0.41 8.42 9.06 -74.06 -0.67 7.75 14 24 H 0.13 5.34 8.06 -2.91 -0.02 5.31 14 Total: -1.00 -59.41 233.95 2.79 -56.62 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: 0.53 Total: 7.07 kcal Atomic # 6 Polarization: -48.60 SS G_CDS: 2.05 Total: -46.55 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: 0.30 Total: -43.44 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -1.25 Total: -16.92 kcal Atomic # 9 Polarization: -5.52 SS G_CDS: 0.78 Total: -4.74 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 1.68 Total: 44.56 kcal Atomic # 16 Polarization: 4.71 SS G_CDS: -1.31 Total: 3.40 kcal Total: -59.41 2.79 -56.62 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307461047.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.175 kcal (2) G-P(sol) polarization free energy of solvation -59.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds