Wall clock time and date at job start Mon Mar 30 2020 05:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30898 * 1 3 3 Si 1.86798 * 119.99905 * 2 1 4 4 H 1.48501 * 109.47109 * 239.99897 * 3 2 1 5 5 H 1.48501 * 109.47308 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47472 * 120.00077 * 3 2 1 7 7 C 1.39844 * 120.00389 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00062 * 163.21073 * 7 2 1 9 9 C 1.41253 * 119.99819 * 343.20865 * 7 2 1 10 10 C 1.39981 * 120.06163 * 334.06947 * 9 7 2 11 11 C 1.40536 * 120.02940 * 180.26883 * 10 9 7 12 12 C 1.45526 * 129.10731 * 180.02562 * 11 10 9 13 13 C 1.32403 * 114.76265 * 179.97438 * 12 11 10 14 14 O 1.35706 * 124.27994 * 179.97438 * 13 12 11 15 15 S 1.75252 * 111.43882 * 0.02562 * 13 12 11 16 16 C 1.40169 * 119.05720 * 0.02562 * 11 10 9 17 17 C 1.40534 * 120.14545 * 359.97438 * 16 11 10 18 18 F 1.35094 * 119.59650 * 179.97438 * 17 16 11 19 19 C 1.35975 * 120.80952 * 0.02562 * 17 16 11 20 20 H 0.97002 * 120.00615 * 359.97438 * 1 2 3 21 21 H 1.08001 * 119.98489 * 0.25137 * 10 9 7 22 22 H 1.08006 * 122.61588 * 359.97438 * 12 11 10 23 23 H 0.96705 * 113.99827 * 179.97438 * 14 13 12 24 24 H 1.07994 * 119.96425 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.0967 1.6964 -1.2125 5 1 1.2780 2.7465 0.0006 6 1 3.0967 1.6965 1.2125 7 6 2.0083 -1.2110 0.0005 8 1 3.0538 -1.2310 -0.2696 9 6 1.3472 -2.4081 0.3545 10 6 0.2281 -2.3692 1.1944 11 6 -0.4257 -3.5611 1.5507 12 6 -1.5921 -3.7497 2.4002 13 6 -1.9744 -5.0090 2.5458 14 8 -3.0352 -5.4041 3.2942 15 16 -0.9362 -6.1011 1.6509 16 6 0.0599 -4.7786 1.0540 17 6 1.1848 -4.7989 0.2118 18 9 1.6437 -5.9786 -0.2601 19 6 1.8175 -3.6458 -0.1330 20 1 -0.4851 0.8400 0.0004 21 1 -0.1329 -1.4228 1.5691 22 1 -2.1058 -2.9267 2.8748 23 1 -3.1808 -6.3601 3.2962 24 1 2.6805 -3.6773 -0.7815 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307465878.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:55 Heat of formation + Delta-G solvation = -57.605562 kcal Electronic energy + Delta-G solvation = -13923.160571 eV Core-core repulsion = 11228.086452 eV Total energy + Delta-G solvation = -2695.074118 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -47.97098 -38.39537 -37.42285 -34.47905 -32.70026 -29.32737 -27.97111 -25.67394 -22.33081 -21.56908 -20.04148 -18.75747 -17.44980 -16.16358 -15.57371 -15.24168 -15.09995 -14.73913 -14.04633 -14.04216 -13.54221 -13.12113 -12.60027 -12.07565 -11.76040 -11.51043 -11.26702 -10.99315 -10.84388 -10.47309 -10.08689 -9.88858 -9.74885 -9.08757 -8.40550 -7.42147 -6.99553 -6.81852 -4.60200 1.75896 1.96861 2.40729 2.65036 2.94288 2.97367 3.00470 3.25967 3.77010 4.12089 4.33399 5.27931 5.36529 5.94001 6.12661 6.35388 6.40962 6.65497 6.79929 6.92259 7.08909 7.31315 7.49472 7.50760 7.74248 7.88808 8.31205 8.58069 8.58423 9.94157 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.032354 B = 0.007947 C = 0.006496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.231214 B = 3522.657798 C = 4309.631304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.074 3.926 3 Si 0.916 3.084 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.446 4.446 8 H 0.086 0.914 9 C 0.130 3.870 10 C -0.150 4.150 11 C -0.004 4.004 12 C -0.165 4.165 13 C 0.040 3.960 14 O -0.450 6.450 15 S -0.007 6.007 16 C -0.275 4.275 17 C 0.153 3.847 18 F -0.161 7.161 19 C -0.225 4.225 20 H 0.287 0.713 21 H 0.130 0.870 22 H 0.138 0.862 23 H 0.393 0.607 24 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.703 -3.791 2.797 5.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.147 4.147 3 Si 0.739 3.261 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.475 4.475 8 H 0.104 0.896 9 C 0.126 3.874 10 C -0.172 4.172 11 C -0.009 4.009 12 C -0.196 4.196 13 C -0.119 4.119 14 O -0.254 6.254 15 S 0.245 5.755 16 C -0.389 4.389 17 C 0.129 3.871 18 F -0.139 7.139 19 C -0.246 4.246 20 H 0.098 0.902 21 H 0.148 0.852 22 H 0.156 0.844 23 H 0.244 0.756 24 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.012 -4.562 2.743 5.691 hybrid contribution 0.255 1.342 -0.044 1.366 sum -1.757 -3.220 2.699 4.554 Atomic orbital electron populations 1.69824 1.07672 1.30084 1.32726 1.25992 0.94860 1.01749 0.92053 0.86229 0.80090 0.79502 0.80241 1.18746 1.20103 1.18531 1.19565 0.97992 0.90671 1.39241 0.89600 1.17165 0.90771 0.91347 0.88159 1.21188 0.99355 0.95047 1.01647 1.18501 0.93590 0.92797 0.96040 1.20392 0.99677 0.94587 1.04984 1.22195 0.93330 0.96561 0.99862 1.84794 1.44646 1.29121 1.66830 1.83596 1.28418 1.10138 1.53302 1.21435 1.06055 0.94975 1.16479 1.16432 0.93536 0.80514 0.96585 1.91369 1.88515 1.46757 1.87304 1.20707 1.04791 0.91397 1.07717 0.90201 0.85197 0.84388 0.75606 0.86531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.82 10.97 55.54 0.61 -18.21 14 2 C 0.07 1.71 5.14 -17.35 -0.09 1.62 14 3 Si 0.92 17.30 29.59 -169.99 -5.03 12.27 14 4 H -0.26 -4.91 7.11 56.52 0.40 -4.51 14 5 H -0.28 -5.11 7.11 56.52 0.40 -4.71 14 6 H -0.26 -4.90 7.11 56.52 0.40 -4.50 14 7 C -0.45 -10.94 9.03 -37.84 -0.34 -11.28 14 8 H 0.09 1.98 7.90 -52.49 -0.41 1.57 14 9 C 0.13 3.27 5.55 -107.02 -0.59 2.68 14 10 C -0.15 -3.77 8.75 -38.06 -0.33 -4.10 14 11 C 0.00 -0.09 6.03 -105.40 -0.64 -0.73 14 12 C -0.17 -3.48 10.41 -38.60 -0.40 -3.89 14 13 C 0.04 0.74 7.49 28.81 0.22 0.96 14 14 O -0.45 -6.89 13.64 -18.82 -0.26 -7.15 14 15 S -0.01 -0.14 23.16 -107.50 -2.49 -2.63 14 16 C -0.27 -6.40 6.48 -37.99 -0.25 -6.65 14 17 C 0.15 3.60 7.26 -39.53 -0.29 3.32 14 18 F -0.16 -3.58 17.25 2.25 0.04 -3.54 14 19 C -0.22 -5.36 9.67 -39.31 -0.38 -5.74 14 20 H 0.29 6.28 8.30 -40.82 -0.34 5.95 14 21 H 0.13 3.30 6.17 -52.49 -0.32 2.98 14 22 H 0.14 2.70 8.06 -52.48 -0.42 2.28 14 23 H 0.39 3.92 9.00 45.56 0.41 4.33 14 24 H 0.12 2.56 8.06 -52.49 -0.42 2.14 14 LS Contribution 239.21 15.07 3.60 3.60 Total: -1.00 -27.00 239.21 -6.92 -33.92 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -0.31 Total: 5.53 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: -3.09 Total: -23.80 kcal Atomic # 7 Polarization: -18.82 SS G_CDS: 0.61 Total: -18.21 kcal Atomic # 8 Polarization: -6.89 SS G_CDS: -0.26 Total: -7.15 kcal Atomic # 9 Polarization: -3.58 SS G_CDS: 0.04 Total: -3.54 kcal Atomic # 14 Polarization: 17.30 SS G_CDS: -5.03 Total: 12.27 kcal Atomic # 16 Polarization: -0.14 SS G_CDS: -2.49 Total: -2.63 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -27.00 -6.92 -33.92 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307465878.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.683 kcal (2) G-P(sol) polarization free energy of solvation -27.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds