Wall clock time and date at job start Mon Mar 30 2020 05:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30898 * 1 3 3 Si 1.86798 * 119.99905 * 2 1 4 4 H 1.48501 * 109.47109 * 239.99897 * 3 2 1 5 5 H 1.48501 * 109.47308 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47472 * 120.00077 * 3 2 1 7 7 C 1.39844 * 120.00389 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00062 * 163.21073 * 7 2 1 9 9 C 1.41253 * 119.99819 * 343.20865 * 7 2 1 10 10 C 1.39981 * 120.06163 * 334.06947 * 9 7 2 11 11 C 1.40536 * 120.02940 * 180.26883 * 10 9 7 12 12 C 1.45526 * 129.10731 * 180.02562 * 11 10 9 13 13 C 1.32403 * 114.76265 * 179.97438 * 12 11 10 14 14 O 1.35706 * 124.27994 * 179.97438 * 13 12 11 15 15 S 1.75252 * 111.43882 * 0.02562 * 13 12 11 16 16 C 1.40169 * 119.05720 * 0.02562 * 11 10 9 17 17 C 1.40534 * 120.14545 * 359.97438 * 16 11 10 18 18 F 1.35094 * 119.59650 * 179.97438 * 17 16 11 19 19 C 1.35975 * 120.80952 * 0.02562 * 17 16 11 20 20 H 0.97002 * 120.00615 * 359.97438 * 1 2 3 21 21 H 1.08001 * 119.98489 * 0.25137 * 10 9 7 22 22 H 1.08006 * 122.61588 * 359.97438 * 12 11 10 23 23 H 0.96705 * 113.99827 * 179.97438 * 14 13 12 24 24 H 1.07994 * 119.96425 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.0967 1.6964 -1.2125 5 1 1.2780 2.7465 0.0006 6 1 3.0967 1.6965 1.2125 7 6 2.0083 -1.2110 0.0005 8 1 3.0538 -1.2310 -0.2696 9 6 1.3472 -2.4081 0.3545 10 6 0.2281 -2.3692 1.1944 11 6 -0.4257 -3.5611 1.5507 12 6 -1.5921 -3.7497 2.4002 13 6 -1.9744 -5.0090 2.5458 14 8 -3.0352 -5.4041 3.2942 15 16 -0.9362 -6.1011 1.6509 16 6 0.0599 -4.7786 1.0540 17 6 1.1848 -4.7989 0.2118 18 9 1.6437 -5.9786 -0.2601 19 6 1.8175 -3.6458 -0.1330 20 1 -0.4851 0.8400 0.0004 21 1 -0.1329 -1.4228 1.5691 22 1 -2.1058 -2.9267 2.8748 23 1 -3.1808 -6.3601 3.2962 24 1 2.6805 -3.6773 -0.7815 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307465878.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:55 Heat of formation + Delta-G solvation = -73.797001 kcal Electronic energy + Delta-G solvation = -13923.862684 eV Core-core repulsion = 11228.086452 eV Total energy + Delta-G solvation = -2695.776232 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.78330 -40.01773 -38.96898 -36.19958 -34.42376 -31.13350 -29.69734 -27.48348 -24.00863 -23.33779 -21.72900 -20.29039 -19.20961 -17.81408 -17.29994 -17.02456 -16.75769 -16.53139 -15.67968 -15.48225 -15.15880 -14.73067 -14.33101 -13.81595 -13.47707 -13.17223 -12.83084 -12.75663 -12.43703 -12.09491 -11.81347 -11.58069 -11.43968 -10.80315 -10.12640 -9.13414 -8.73673 -8.52307 -6.45143 0.06544 0.39576 0.58416 0.95211 1.37450 1.42768 1.54457 1.61036 2.18980 2.56272 2.80099 3.43724 3.53751 4.18263 4.45326 4.68295 4.80087 4.82793 5.06621 5.15326 5.26629 5.54038 5.67057 5.90717 6.04887 6.35534 6.47808 6.73975 6.76166 8.22026 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.032354 B = 0.007947 C = 0.006496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.231214 B = 3522.657798 C = 4309.631304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.036 3.964 3 Si 0.989 3.011 4 H -0.256 1.256 5 H -0.268 1.268 6 H -0.258 1.258 7 C -0.475 4.475 8 H 0.092 0.908 9 C 0.108 3.892 10 C -0.179 4.179 11 C -0.007 4.007 12 C -0.207 4.207 13 C 0.072 3.928 14 O -0.439 6.439 15 S 0.052 5.948 16 C -0.307 4.307 17 C 0.147 3.853 18 F -0.154 7.154 19 C -0.238 4.238 20 H 0.294 0.706 21 H 0.117 0.883 22 H 0.145 0.855 23 H 0.420 0.580 24 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.205 -4.376 3.310 5.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.182 4.182 3 Si 0.809 3.191 4 H -0.180 1.180 5 H -0.192 1.192 6 H -0.182 1.182 7 C -0.503 4.503 8 H 0.110 0.890 9 C 0.104 3.896 10 C -0.202 4.202 11 C -0.013 4.013 12 C -0.238 4.238 13 C -0.088 4.088 14 O -0.246 6.246 15 S 0.304 5.696 16 C -0.421 4.421 17 C 0.124 3.876 18 F -0.133 7.133 19 C -0.260 4.260 20 H 0.105 0.895 21 H 0.134 0.866 22 H 0.163 0.837 23 H 0.276 0.724 24 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.529 -5.197 3.259 6.635 hybrid contribution 0.282 1.328 -0.149 1.366 sum -2.247 -3.869 3.111 5.449 Atomic orbital electron populations 1.69880 1.09166 1.31418 1.32901 1.26866 0.95535 1.04851 0.90939 0.85127 0.78701 0.74928 0.80323 1.18037 1.19212 1.18248 1.19880 0.98488 0.91510 1.40414 0.89039 1.17475 0.91303 0.92239 0.88603 1.21131 1.00574 0.95266 1.03190 1.18758 0.94091 0.92580 0.95852 1.20368 1.00295 0.96138 1.07005 1.22182 0.92849 0.95904 0.97903 1.84788 1.42653 1.31905 1.65291 1.83291 1.26634 1.07481 1.52148 1.21826 1.06692 0.97042 1.16576 1.16519 0.93798 0.80627 0.96682 1.91372 1.88458 1.46234 1.87212 1.20858 1.05429 0.91411 1.08271 0.89458 0.86560 0.83731 0.72383 0.85502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.98 10.97 21.81 0.24 -39.74 14 2 C 0.04 1.68 5.14 85.22 0.44 2.11 14 3 Si 0.99 35.33 29.59 68.60 2.03 37.36 14 4 H -0.26 -8.82 7.11 99.48 0.71 -8.11 14 5 H -0.27 -9.11 7.11 99.48 0.71 -8.40 14 6 H -0.26 -9.05 7.11 99.48 0.71 -8.34 14 7 C -0.47 -23.89 9.03 23.40 0.21 -23.68 14 8 H 0.09 4.32 7.90 -2.91 -0.02 4.30 14 9 C 0.11 5.64 5.55 -21.42 -0.12 5.52 14 10 C -0.18 -9.34 8.75 23.25 0.20 -9.14 14 11 C -0.01 -0.34 6.03 -20.37 -0.12 -0.46 14 12 C -0.21 -8.59 10.41 23.04 0.24 -8.35 14 13 C 0.07 2.53 7.49 66.71 0.50 3.03 14 14 O -0.44 -11.70 13.64 -90.27 -1.23 -12.94 14 15 S 0.05 1.84 23.16 -56.49 -1.31 0.53 14 16 C -0.31 -14.16 6.48 23.30 0.15 -14.01 14 17 C 0.15 6.96 7.26 22.30 0.16 7.12 14 18 F -0.15 -6.75 17.25 44.97 0.78 -5.97 14 19 C -0.24 -11.65 9.67 22.44 0.22 -11.44 14 20 H 0.29 13.08 8.30 -92.71 -0.77 12.31 14 21 H 0.12 6.22 6.17 -2.91 -0.02 6.21 14 22 H 0.15 5.65 8.06 -2.91 -0.02 5.63 14 23 H 0.42 6.31 9.00 -74.05 -0.67 5.65 14 24 H 0.13 5.71 8.06 -2.91 -0.02 5.68 14 Total: -1.00 -58.11 239.21 2.98 -55.13 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 0.60 Total: 14.91 kcal Atomic # 6 Polarization: -51.17 SS G_CDS: 1.88 Total: -49.29 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: 0.24 Total: -39.74 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: -1.23 Total: -12.94 kcal Atomic # 9 Polarization: -6.75 SS G_CDS: 0.78 Total: -5.97 kcal Atomic # 14 Polarization: 35.33 SS G_CDS: 2.03 Total: 37.36 kcal Atomic # 16 Polarization: 1.84 SS G_CDS: -1.31 Total: 0.53 kcal Total: -58.11 2.98 -55.13 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307465878.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.667 kcal (2) G-P(sol) polarization free energy of solvation -58.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds