Wall clock time and date at job start Mon Mar 30 2020 05:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30967 * 1 3 3 Si 1.86807 * 120.00010 * 2 1 4 4 H 1.48498 * 109.47047 * 85.24895 * 3 2 1 5 5 H 1.48496 * 109.46608 * 205.24732 * 3 2 1 6 6 H 1.48502 * 109.46858 * 325.24524 * 3 2 1 7 7 C 1.39825 * 119.99946 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00450 * 22.73510 * 7 2 1 9 9 C 1.40764 * 120.00186 * 202.72991 * 7 2 1 10 10 C 1.42176 * 120.14194 * 221.17255 * 9 7 2 11 11 S 1.75896 * 130.44386 * 0.02562 * 10 9 7 12 12 C 1.75298 * 92.18758 * 179.97438 * 11 10 9 13 13 C 1.32010 * 111.30102 * 0.02562 * 12 11 10 14 14 F 1.35108 * 122.57806 * 180.02562 * 13 12 11 15 15 C 1.39292 * 119.73793 * 180.02562 * 10 9 7 16 16 C 1.41583 * 119.10796 * 359.97438 * 15 10 9 17 17 C 1.37385 * 121.03458 * 0.02562 * 16 15 10 18 18 C 1.38664 * 120.68808 * 359.75463 * 17 16 15 19 19 O 1.35644 * 120.14537 * 180.26241 * 18 17 16 20 20 H 0.97002 * 119.99658 * 359.97438 * 1 2 3 21 21 H 1.08001 * 124.34954 * 179.97438 * 12 11 10 22 22 H 1.08001 * 119.48040 * 180.02562 * 16 15 10 23 23 H 1.08002 * 119.65313 * 180.02562 * 17 16 15 24 24 H 0.96699 * 114.00017 * 275.44676 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3097 0.0000 0.0000 3 14 2.2437 1.6178 0.0000 4 1 2.3908 2.1044 1.3952 5 1 3.5878 1.4132 -0.5972 6 1 1.4950 2.6216 -0.7982 7 6 2.0088 -1.2109 0.0005 8 1 1.5318 -2.1101 -0.3605 9 6 3.3344 -1.2581 0.4716 10 6 4.3087 -2.0336 -0.2146 11 16 4.1656 -3.0276 -1.6587 12 6 5.8591 -3.4765 -1.5990 13 6 6.4678 -2.9162 -0.5702 14 9 7.7791 -3.1084 -0.3079 15 6 5.6179 -2.0747 0.2592 16 6 5.9534 -1.3384 1.4211 17 6 5.0099 -0.5898 2.0822 18 6 3.7027 -0.5330 1.6231 19 8 2.7814 0.2138 2.2813 20 1 -0.4850 0.8401 0.0004 21 1 6.3422 -4.1284 -2.3118 22 1 6.9668 -1.3657 1.7935 23 1 5.2904 -0.0364 2.9662 24 1 2.3670 -0.2407 3.0275 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307466990.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:33 Heat of formation + Delta-G solvation = -68.323318 kcal Electronic energy + Delta-G solvation = -14352.467925 eV Core-core repulsion = 11656.929050 eV Total energy + Delta-G solvation = -2695.538875 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.81661 -40.41161 -37.93727 -35.60232 -34.58380 -32.40816 -29.46166 -27.16072 -24.23073 -22.97832 -21.83606 -19.84729 -19.03695 -18.20120 -17.50774 -17.06893 -16.64150 -16.31931 -16.09845 -15.71066 -14.80376 -14.61101 -14.12018 -13.90076 -13.62847 -13.06698 -12.88710 -12.84692 -12.22126 -12.07145 -11.79069 -11.55363 -11.00197 -10.86593 -10.15025 -9.26612 -8.89384 -8.57183 -6.52276 -0.18631 0.50572 0.69883 1.15196 1.19991 1.36557 1.48465 1.56030 2.27598 2.52451 3.10227 3.21349 3.83609 3.89131 4.22523 4.45453 4.52346 4.76930 4.95897 5.06943 5.28216 5.41540 5.58952 5.74482 5.91739 6.17586 6.43533 6.72184 7.19982 8.14612 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.031634 B = 0.010784 C = 0.008912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.913177 B = 2595.857550 C = 3140.978181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.085 3.915 3 Si 0.963 3.037 4 H -0.229 1.229 5 H -0.283 1.283 6 H -0.287 1.287 7 C -0.479 4.479 8 H 0.064 0.936 9 C 0.084 3.916 10 C -0.203 4.203 11 S 0.125 5.875 12 C -0.237 4.237 13 C 0.074 3.926 14 F -0.131 7.131 15 C -0.093 4.093 16 C -0.176 4.176 17 C -0.092 4.092 18 C -0.020 4.020 19 O -0.483 6.483 20 H 0.294 0.706 21 H 0.205 0.795 22 H 0.134 0.866 23 H 0.144 0.856 24 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.961 -1.960 0.664 8.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.133 4.133 3 Si 0.788 3.212 4 H -0.153 1.153 5 H -0.208 1.208 6 H -0.215 1.215 7 C -0.507 4.507 8 H 0.082 0.918 9 C 0.078 3.922 10 C -0.319 4.319 11 S 0.388 5.612 12 C -0.372 4.372 13 C 0.041 3.959 14 F -0.109 7.109 15 C -0.101 4.101 16 C -0.197 4.197 17 C -0.112 4.112 18 C -0.069 4.069 19 O -0.294 6.294 20 H 0.104 0.896 21 H 0.222 0.778 22 H 0.152 0.848 23 H 0.161 0.839 24 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 6.711 -1.873 -0.781 7.011 hybrid contribution 1.096 0.410 1.226 1.695 sum 7.807 -1.463 0.446 7.955 Atomic orbital electron populations 1.69795 1.09101 1.31487 1.35513 1.26467 0.94793 1.03239 0.88799 0.85432 0.78033 0.77596 0.80121 1.15321 1.20802 1.21453 1.18996 0.95776 0.96496 1.39407 0.91759 1.17477 0.91795 0.90844 0.92074 1.22820 0.96018 1.10840 1.02209 1.83821 1.03988 1.47128 1.26266 1.25276 0.99798 1.08621 1.03504 1.17354 0.78836 1.02275 0.97481 1.91434 1.31597 1.93945 1.93969 1.19187 0.91985 1.00634 0.98305 1.20480 1.00024 1.02467 0.96747 1.21073 0.92060 0.97928 1.00118 1.18421 0.89500 1.04202 0.94737 1.85027 1.56265 1.40253 1.47895 0.89589 0.77794 0.84833 0.83857 0.76861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.96 13.94 21.81 0.30 -43.65 14 2 C 0.08 4.41 4.81 85.21 0.41 4.82 14 3 Si 0.96 44.22 24.76 68.60 1.70 45.92 14 4 H -0.23 -10.07 6.06 99.48 0.60 -9.47 14 5 H -0.28 -13.85 7.11 99.48 0.71 -13.14 14 6 H -0.29 -12.51 7.11 99.48 0.71 -11.81 14 7 C -0.48 -25.52 9.08 23.27 0.21 -25.31 14 8 H 0.06 3.69 8.06 -2.91 -0.02 3.67 14 9 C 0.08 4.13 4.76 -21.01 -0.10 4.03 14 10 C -0.20 -9.27 6.36 23.50 0.15 -9.12 14 11 S 0.12 4.79 22.95 -56.49 -1.30 3.50 14 12 C -0.24 -7.68 11.03 66.91 0.74 -6.95 14 13 C 0.07 2.68 7.57 23.24 0.18 2.86 14 14 F -0.13 -4.43 17.32 44.97 0.78 -3.65 14 15 C -0.09 -3.88 6.04 -20.32 -0.12 -4.01 14 16 C -0.18 -6.77 10.08 22.89 0.23 -6.54 14 17 C -0.09 -3.55 9.91 22.17 0.22 -3.33 14 18 C -0.02 -0.87 5.24 23.04 0.12 -0.75 14 19 O -0.48 -20.18 8.40 -89.59 -0.75 -20.93 14 20 H 0.29 14.07 8.30 -92.71 -0.77 13.30 14 21 H 0.21 4.87 8.06 -2.91 -0.02 4.85 14 22 H 0.13 4.37 8.06 -2.91 -0.02 4.34 14 23 H 0.14 4.52 8.06 -2.91 -0.02 4.49 14 24 H 0.37 12.69 9.06 -74.06 -0.67 12.01 14 Total: -1.00 -58.11 232.10 3.25 -54.87 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: 0.48 Total: 8.25 kcal Atomic # 6 Polarization: -46.33 SS G_CDS: 2.03 Total: -44.29 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: 0.30 Total: -43.65 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.75 Total: -20.93 kcal Atomic # 9 Polarization: -4.43 SS G_CDS: 0.78 Total: -3.65 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.70 Total: 45.92 kcal Atomic # 16 Polarization: 4.79 SS G_CDS: -1.30 Total: 3.50 kcal Total: -58.11 3.25 -54.87 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307466990.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.458 kcal (2) G-P(sol) polarization free energy of solvation -58.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds