Wall clock time and date at job start Mon Mar 30 2020 05:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30817 * 1 3 3 Si 1.86800 * 119.99838 * 2 1 4 4 H 1.48497 * 109.46846 * 239.99449 * 3 2 1 5 5 H 1.48493 * 109.47596 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47199 * 119.99797 * 3 2 1 7 7 C 1.40098 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00314 * 180.02562 * 7 2 1 9 9 C 1.39905 * 119.99744 * 0.02562 * 7 2 1 10 10 C 1.37018 * 124.84678 * 179.97438 * 9 7 2 11 11 C 1.39643 * 115.03650 * 179.97438 * 10 9 7 12 12 C 1.40258 * 112.94211 * 0.02562 * 11 10 9 13 13 S 1.75464 * 124.84718 * 359.97438 * 9 7 2 14 14 C 1.39671 * 119.88805 * 179.74811 * 12 11 10 15 15 F 1.35096 * 119.72977 * 180.27234 * 14 12 11 16 16 C 1.37963 * 120.53726 * 0.53086 * 14 12 11 17 17 C 1.38769 * 120.28789 * 359.46609 * 16 14 12 18 18 C 1.37563 * 120.43597 * 0.25369 * 17 16 14 19 19 O 1.35779 * 119.86562 * 180.02562 * 18 17 16 20 20 H 0.97008 * 120.00235 * 0.02562 * 1 2 3 21 21 H 1.07999 * 122.47817 * 0.02562 * 10 9 7 22 22 H 1.08002 * 119.85991 * 179.74921 * 16 14 12 23 23 H 1.07993 * 119.78469 * 180.28386 * 17 16 14 24 24 H 0.96699 * 114.00603 * 90.00133 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.0959 1.6963 -1.2124 5 1 1.2772 2.7465 -0.0006 6 1 3.0958 1.6965 1.2125 7 6 2.0087 -1.2133 0.0005 8 1 3.0886 -1.2133 0.0010 9 6 1.3091 -2.4249 0.0005 10 6 1.8914 -3.6651 0.0005 11 6 0.9973 -4.7378 0.0011 12 6 -0.3449 -4.3308 0.0010 13 16 -0.4393 -2.5731 0.0005 14 6 -1.3624 -5.2876 -0.0038 15 9 -2.6541 -4.8920 -0.0095 16 6 -1.0590 -6.6334 0.0025 17 6 0.2638 -7.0527 0.0027 18 6 1.2865 -6.1326 0.0017 19 8 2.5767 -6.5557 0.0013 20 1 -0.4851 0.8401 -0.0004 21 1 2.9626 -3.8029 0.0009 22 1 -1.8545 -7.3640 0.0028 23 1 0.4920 -8.1083 0.0030 24 1 2.9501 -6.6787 -0.8822 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307491444.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:24 Heat of formation + Delta-G solvation = -93.468329 kcal Electronic energy + Delta-G solvation = -13967.275809 eV Core-core repulsion = 11270.646565 eV Total energy + Delta-G solvation = -2696.629245 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.77553 -40.35378 -37.48185 -36.66106 -34.91269 -31.03892 -29.89549 -27.32379 -24.45895 -23.14221 -21.31474 -20.21014 -18.99239 -18.06232 -17.61482 -16.90366 -16.56794 -16.34200 -15.70191 -15.36222 -14.98159 -14.45858 -13.96334 -13.74441 -13.36199 -13.21813 -13.03376 -12.62723 -12.41788 -12.05371 -11.94176 -11.49897 -11.14385 -10.93007 -10.01782 -9.37737 -9.01071 -8.29533 -6.66475 0.05683 0.38416 1.24956 1.25763 1.34789 1.52198 1.76387 1.77171 2.09814 2.64959 3.02786 3.47895 3.56899 4.14535 4.21888 4.63337 4.82241 4.97097 5.03962 5.26487 5.37379 5.39933 5.58192 5.78958 5.96110 6.06886 6.30038 6.43649 7.02754 7.86350 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.035545 B = 0.008426 C = 0.006832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.554513 B = 3322.340815 C = 4097.501713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.015 3.985 3 Si 1.018 2.982 4 H -0.252 1.252 5 H -0.259 1.259 6 H -0.253 1.253 7 C -0.399 4.399 8 H 0.110 0.890 9 C 0.027 3.973 10 C -0.381 4.381 11 C -0.002 4.002 12 C -0.326 4.326 13 S 0.135 5.865 14 C 0.129 3.871 15 F -0.153 7.153 16 C -0.203 4.203 17 C -0.097 4.097 18 C 0.044 3.956 19 O -0.500 6.500 20 H 0.316 0.684 21 H 0.110 0.890 22 H 0.159 0.841 23 H 0.161 0.839 24 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.784 -2.357 -1.697 3.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.205 4.205 3 Si 0.835 3.165 4 H -0.175 1.175 5 H -0.183 1.183 6 H -0.177 1.177 7 C -0.432 4.432 8 H 0.128 0.872 9 C -0.093 4.093 10 C -0.405 4.405 11 C -0.011 4.011 12 C -0.441 4.441 13 S 0.395 5.605 14 C 0.105 3.895 15 F -0.131 7.131 16 C -0.223 4.223 17 C -0.118 4.118 18 C -0.002 4.002 19 O -0.311 6.311 20 H 0.130 0.870 21 H 0.128 0.872 22 H 0.176 0.824 23 H 0.179 0.821 24 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -0.694 -1.157 -1.090 1.734 hybrid contribution 1.230 -0.331 -0.479 1.361 sum 0.536 -1.488 -1.569 2.228 Atomic orbital electron populations 1.68635 1.09310 1.33138 1.30935 1.27419 0.95876 1.06294 0.90895 0.84656 0.78366 0.72710 0.80747 1.17549 1.18255 1.17723 1.19773 0.96592 0.89197 1.37647 0.87215 1.21867 0.95308 0.96913 0.95179 1.19623 0.98165 0.90098 1.32645 1.18377 0.91287 0.94274 0.97140 1.23731 0.96335 1.02978 1.21029 1.84796 1.05149 0.91561 1.78992 1.17213 0.76036 0.92760 1.03457 1.91383 1.35534 1.92087 1.94136 1.20692 0.98072 0.92124 1.11455 1.20953 0.90551 1.00052 1.00195 1.18514 0.84532 0.88954 1.08191 1.84705 1.24129 1.87986 1.34283 0.87006 0.87179 0.82378 0.82113 0.74953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -36.83 10.58 21.86 0.23 -36.60 14 2 C 0.01 0.66 5.50 85.30 0.47 1.13 14 3 Si 1.02 32.64 29.56 68.60 2.03 34.67 14 4 H -0.25 -7.79 7.11 99.48 0.71 -7.09 14 5 H -0.26 -7.72 7.11 99.48 0.71 -7.01 14 6 H -0.25 -7.92 7.11 99.48 0.71 -7.21 14 7 C -0.40 -19.71 9.26 23.13 0.21 -19.50 14 8 H 0.11 5.04 7.85 -2.91 -0.02 5.02 14 9 C 0.03 1.44 6.12 22.39 0.14 1.58 14 10 C -0.38 -19.98 9.98 22.32 0.22 -19.76 14 11 C 0.00 -0.11 5.86 -21.40 -0.13 -0.23 14 12 C -0.33 -16.38 6.44 23.11 0.15 -16.23 14 13 S 0.14 7.03 20.13 -56.49 -1.14 5.90 14 14 C 0.13 5.75 7.31 22.55 0.16 5.91 14 15 F -0.15 -6.65 17.26 44.97 0.78 -5.87 14 16 C -0.20 -7.44 10.00 22.33 0.22 -7.22 14 17 C -0.10 -3.43 9.92 22.24 0.22 -3.21 14 18 C 0.04 1.85 6.78 23.16 0.16 2.01 14 19 O -0.50 -18.39 13.35 -91.07 -1.22 -19.61 14 20 H 0.32 12.87 8.30 -92.70 -0.77 12.10 14 21 H 0.11 5.59 8.06 -2.91 -0.02 5.56 14 22 H 0.16 4.57 8.06 -2.91 -0.02 4.55 14 23 H 0.16 4.33 8.06 -2.91 -0.02 4.30 14 24 H 0.39 10.49 9.06 -74.06 -0.67 9.82 14 Total: -1.00 -60.09 238.76 3.10 -56.99 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: 0.59 Total: 20.05 kcal Atomic # 6 Polarization: -57.35 SS G_CDS: 1.83 Total: -55.52 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: 0.23 Total: -36.60 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -1.22 Total: -19.61 kcal Atomic # 9 Polarization: -6.65 SS G_CDS: 0.78 Total: -5.87 kcal Atomic # 14 Polarization: 32.64 SS G_CDS: 2.03 Total: 34.67 kcal Atomic # 16 Polarization: 7.03 SS G_CDS: -1.14 Total: 5.90 kcal Total: -60.09 3.10 -56.99 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307491444.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.478 kcal (2) G-P(sol) polarization free energy of solvation -60.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds