Wall clock time and date at job start Mon Mar 30 2020 05:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30977 * 1 3 3 Si 1.86792 * 120.00471 * 2 1 4 4 H 1.48505 * 109.47217 * 269.99718 * 3 2 1 5 5 H 1.48499 * 109.47288 * 29.99603 * 3 2 1 6 6 H 1.48500 * 109.47327 * 150.00320 * 3 2 1 7 7 C 1.39799 * 119.99473 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99204 * 162.52509 * 7 2 1 9 9 C 1.40808 * 120.00121 * 342.80331 * 7 2 1 10 10 C 1.41218 * 120.24608 * 334.26398 * 9 7 2 11 11 C 1.35303 * 120.42582 * 179.75485 * 10 9 7 12 12 F 1.35089 * 119.50690 * 180.23515 * 11 10 9 13 13 C 1.42424 * 120.98298 * 0.52201 * 11 10 9 14 14 C 1.40481 * 128.53093 * 179.75213 * 13 11 10 15 15 C 1.32514 * 115.86421 * 179.97438 * 14 13 11 16 16 S 1.75489 * 110.76813 * 0.02562 * 15 14 13 17 17 C 1.39931 * 119.04975 * 359.73647 * 13 11 10 18 18 C 1.39625 * 120.15317 * 359.97438 * 17 13 11 19 19 O 1.35675 * 120.06429 * 179.97438 * 18 17 13 20 20 H 0.97002 * 119.99759 * 359.97438 * 1 2 3 21 21 H 1.07997 * 119.78701 * 359.97438 * 10 9 7 22 22 H 1.08000 * 122.06831 * 0.02562 * 14 13 11 23 23 H 1.08005 * 124.61872 * 180.02562 * 15 14 13 24 24 H 0.96696 * 114.00083 * 270.02602 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3098 0.0000 0.0000 3 14 2.2439 1.6176 0.0000 4 1 2.4915 2.0462 -1.4001 5 1 1.4414 2.6526 0.6999 6 1 3.5415 1.4399 0.7000 7 6 2.0087 -1.2108 0.0005 8 1 3.0513 -1.2324 -0.2803 9 6 1.3517 -2.4027 0.3616 10 6 0.2251 -2.3645 1.2122 11 6 -0.4118 -3.5072 1.5575 12 9 -1.4906 -3.4486 2.3685 13 6 0.0417 -4.7713 1.0836 14 6 -0.4904 -6.0454 1.3429 15 6 0.1354 -7.0614 0.7666 16 16 1.4960 -6.4948 -0.1859 17 6 1.1604 -4.8209 0.2444 18 6 1.8170 -3.6436 -0.1192 19 8 2.9018 -3.6938 -0.9325 20 1 -0.4850 0.8401 0.0004 21 1 -0.1324 -1.4167 1.5867 22 1 -1.3564 -6.1878 1.9722 23 1 -0.1527 -8.0973 0.8692 24 1 3.7420 -3.7840 -0.4625 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307495811.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:25 Heat of formation + Delta-G solvation = -60.173348 kcal Electronic energy + Delta-G solvation = -14228.305680 eV Core-core repulsion = 11533.120214 eV Total energy + Delta-G solvation = -2695.185466 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -47.87854 -38.51931 -36.10287 -34.89614 -32.71697 -29.04610 -28.31977 -25.46389 -22.73628 -21.19825 -19.85984 -18.26470 -17.14236 -16.26492 -16.06265 -15.18291 -14.67548 -14.44245 -14.20317 -13.48530 -13.35053 -12.78452 -12.52071 -12.05535 -11.76874 -11.61139 -11.17689 -10.89538 -10.86532 -10.44185 -10.08933 -9.94789 -9.37749 -9.29748 -8.38281 -7.60445 -7.25700 -6.69995 -4.69343 1.69708 2.39541 2.51092 2.77450 2.88067 2.91255 2.93654 3.28543 3.64123 4.19936 5.03234 5.42976 5.48752 5.65572 6.09867 6.21523 6.47716 6.65347 6.77707 6.92580 6.95942 7.24750 7.37277 7.48246 7.75297 8.07682 8.27517 8.35915 8.88945 9.70986 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.033667 B = 0.008952 C = 0.007222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.467728 B = 3126.944523 C = 3875.947064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.068 3.932 3 Si 0.922 3.078 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.256 1.256 7 C -0.407 4.407 8 H 0.095 0.905 9 C 0.127 3.873 10 C -0.173 4.173 11 C 0.139 3.861 12 F -0.158 7.158 13 C -0.233 4.233 14 C -0.067 4.067 15 C -0.270 4.270 16 S 0.030 5.970 17 C -0.064 4.064 18 C -0.025 4.025 19 O -0.480 6.480 20 H 0.292 0.708 21 H 0.139 0.861 22 H 0.123 0.877 23 H 0.148 0.852 24 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.036 -2.447 1.932 3.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.154 4.154 3 Si 0.745 3.255 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.179 1.179 7 C -0.435 4.435 8 H 0.113 0.887 9 C 0.120 3.880 10 C -0.193 4.193 11 C 0.117 3.883 12 F -0.137 7.137 13 C -0.239 4.239 14 C -0.097 4.097 15 C -0.403 4.403 16 S 0.290 5.710 17 C -0.180 4.180 18 C -0.079 4.079 19 O -0.286 6.286 20 H 0.103 0.897 21 H 0.156 0.844 22 H 0.141 0.859 23 H 0.166 0.834 24 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 2.349 -3.046 0.649 3.901 hybrid contribution -0.753 1.292 1.336 2.005 sum 1.595 -1.754 1.985 3.092 Atomic orbital electron populations 1.69866 1.07935 1.30717 1.30245 1.26183 0.94968 1.02359 0.91924 0.86053 0.80536 0.79087 0.79813 1.18862 1.19611 1.17914 1.19595 0.98602 0.90378 1.34891 0.88742 1.17467 0.90653 0.91734 0.88155 1.20782 0.99547 0.96470 1.02491 1.17269 0.85319 0.93052 0.92645 1.91348 1.53650 1.97350 1.71371 1.17493 1.02889 0.92388 1.11151 1.19653 0.99511 0.91023 0.99471 1.24525 1.04079 1.01692 1.10003 1.83651 1.33446 0.98664 1.55230 1.22474 0.99786 0.95481 1.00265 1.17633 0.95559 0.89502 1.05162 1.84858 1.14663 1.95574 1.33477 0.89721 0.84379 0.85914 0.83391 0.79707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.09 10.99 55.54 0.61 -17.48 14 2 C 0.07 1.54 5.13 -17.33 -0.09 1.45 14 3 Si 0.92 16.73 29.59 -169.99 -5.03 11.70 14 4 H -0.26 -4.77 7.11 56.52 0.40 -4.37 14 5 H -0.27 -4.80 7.11 56.52 0.40 -4.40 14 6 H -0.26 -4.56 7.11 56.52 0.40 -4.16 14 7 C -0.41 -9.83 8.68 -38.03 -0.33 -10.16 14 8 H 0.09 2.16 7.64 -52.49 -0.40 1.76 14 9 C 0.13 3.20 5.56 -106.76 -0.59 2.60 14 10 C -0.17 -4.31 8.52 -39.50 -0.34 -4.65 14 11 C 0.14 3.35 7.30 -39.02 -0.28 3.07 14 12 F -0.16 -3.62 17.16 2.25 0.04 -3.58 14 13 C -0.23 -5.48 5.89 -106.81 -0.63 -6.11 14 14 C -0.07 -1.37 10.04 -40.65 -0.41 -1.78 14 15 C -0.27 -5.06 11.10 28.82 0.32 -4.74 14 16 S 0.03 0.60 23.27 -107.50 -2.50 -1.90 14 17 C -0.06 -1.51 6.42 -38.43 -0.25 -1.76 14 18 C -0.03 -0.61 6.77 -38.03 -0.26 -0.87 14 19 O -0.48 -10.64 12.74 -18.73 -0.24 -10.88 14 20 H 0.29 6.16 8.30 -40.82 -0.34 5.82 14 21 H 0.14 3.46 6.20 -52.49 -0.33 3.14 14 22 H 0.12 2.25 8.06 -52.49 -0.42 1.82 14 23 H 0.15 2.27 8.06 -52.48 -0.42 1.85 14 24 H 0.35 6.17 9.06 45.56 0.41 6.58 14 LS Contribution 237.79 15.07 3.58 3.58 Total: -1.00 -26.78 237.79 -6.69 -33.46 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -0.29 Total: 8.04 kcal Atomic # 6 Polarization: -20.10 SS G_CDS: -2.86 Total: -22.95 kcal Atomic # 7 Polarization: -18.09 SS G_CDS: 0.61 Total: -17.48 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: -0.24 Total: -10.88 kcal Atomic # 9 Polarization: -3.62 SS G_CDS: 0.04 Total: -3.58 kcal Atomic # 14 Polarization: 16.73 SS G_CDS: -5.03 Total: 11.70 kcal Atomic # 16 Polarization: 0.60 SS G_CDS: -2.50 Total: -1.90 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -26.78 -6.69 -33.46 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307495811.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.709 kcal (2) G-P(sol) polarization free energy of solvation -26.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds