Wall clock time and date at job start Mon Mar 30 2020 05:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30977 * 1 3 3 Si 1.86792 * 120.00471 * 2 1 4 4 H 1.48505 * 109.47217 * 269.99718 * 3 2 1 5 5 H 1.48499 * 109.47288 * 29.99603 * 3 2 1 6 6 H 1.48500 * 109.47327 * 150.00320 * 3 2 1 7 7 C 1.39799 * 119.99473 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99204 * 162.52509 * 7 2 1 9 9 C 1.40808 * 120.00121 * 342.80331 * 7 2 1 10 10 C 1.41218 * 120.24608 * 334.26398 * 9 7 2 11 11 C 1.35303 * 120.42582 * 179.75485 * 10 9 7 12 12 F 1.35089 * 119.50690 * 180.23515 * 11 10 9 13 13 C 1.42424 * 120.98298 * 0.52201 * 11 10 9 14 14 C 1.40481 * 128.53093 * 179.75213 * 13 11 10 15 15 C 1.32514 * 115.86421 * 179.97438 * 14 13 11 16 16 S 1.75489 * 110.76813 * 0.02562 * 15 14 13 17 17 C 1.39931 * 119.04975 * 359.73647 * 13 11 10 18 18 C 1.39625 * 120.15317 * 359.97438 * 17 13 11 19 19 O 1.35675 * 120.06429 * 179.97438 * 18 17 13 20 20 H 0.97002 * 119.99759 * 359.97438 * 1 2 3 21 21 H 1.07997 * 119.78701 * 359.97438 * 10 9 7 22 22 H 1.08000 * 122.06831 * 0.02562 * 14 13 11 23 23 H 1.08005 * 124.61872 * 180.02562 * 15 14 13 24 24 H 0.96696 * 114.00083 * 270.02602 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3098 0.0000 0.0000 3 14 2.2439 1.6176 0.0000 4 1 2.4915 2.0462 -1.4001 5 1 1.4414 2.6526 0.6999 6 1 3.5415 1.4399 0.7000 7 6 2.0087 -1.2108 0.0005 8 1 3.0513 -1.2324 -0.2803 9 6 1.3517 -2.4027 0.3616 10 6 0.2251 -2.3645 1.2122 11 6 -0.4118 -3.5072 1.5575 12 9 -1.4906 -3.4486 2.3685 13 6 0.0417 -4.7713 1.0836 14 6 -0.4904 -6.0454 1.3429 15 6 0.1354 -7.0614 0.7666 16 16 1.4960 -6.4948 -0.1859 17 6 1.1604 -4.8209 0.2444 18 6 1.8170 -3.6436 -0.1192 19 8 2.9018 -3.6938 -0.9325 20 1 -0.4850 0.8401 0.0004 21 1 -0.1324 -1.4167 1.5867 22 1 -1.3564 -6.1878 1.9722 23 1 -0.1527 -8.0973 0.8692 24 1 3.7420 -3.7840 -0.4625 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307495811.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:25 Heat of formation + Delta-G solvation = -76.185473 kcal Electronic energy + Delta-G solvation = -14229.000018 eV Core-core repulsion = 11533.120214 eV Total energy + Delta-G solvation = -2695.879804 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.72034 -40.27715 -37.81068 -36.63224 -34.44058 -30.78839 -30.11876 -27.20881 -24.47492 -22.98404 -21.53880 -20.02300 -18.87562 -18.05601 -17.77354 -16.85253 -16.49168 -16.13659 -15.96280 -15.11829 -15.00009 -14.48526 -14.24435 -13.74318 -13.45316 -13.20786 -12.73694 -12.60767 -12.50106 -12.02497 -11.73298 -11.63938 -11.11759 -11.00130 -10.10790 -9.36076 -8.94557 -8.40874 -6.48999 0.00013 0.55148 0.83932 1.28148 1.29672 1.39151 1.54599 1.68250 2.13265 2.47138 3.24069 3.61938 3.74612 4.06260 4.48940 4.55922 4.75740 4.92295 5.11481 5.18654 5.19814 5.51057 5.65231 5.69885 5.94508 6.27861 6.50174 6.58594 7.22176 8.05807 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.033667 B = 0.008952 C = 0.007222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.467728 B = 3126.944523 C = 3875.947064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.031 3.969 3 Si 0.996 3.004 4 H -0.260 1.260 5 H -0.263 1.263 6 H -0.250 1.250 7 C -0.437 4.437 8 H 0.099 0.901 9 C 0.099 3.901 10 C -0.188 4.188 11 C 0.125 3.875 12 F -0.155 7.155 13 C -0.243 4.243 14 C -0.093 4.093 15 C -0.240 4.240 16 S 0.066 5.934 17 C -0.096 4.096 18 C -0.039 4.039 19 O -0.487 6.487 20 H 0.300 0.700 21 H 0.128 0.872 22 H 0.144 0.856 23 H 0.192 0.808 24 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.509 -3.510 1.855 4.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.188 4.188 3 Si 0.815 3.185 4 H -0.184 1.184 5 H -0.187 1.187 6 H -0.174 1.174 7 C -0.464 4.464 8 H 0.117 0.883 9 C 0.092 3.908 10 C -0.208 4.208 11 C 0.103 3.897 12 F -0.134 7.134 13 C -0.249 4.249 14 C -0.123 4.123 15 C -0.373 4.373 16 S 0.326 5.674 17 C -0.212 4.212 18 C -0.092 4.092 19 O -0.295 6.295 20 H 0.111 0.889 21 H 0.145 0.855 22 H 0.162 0.838 23 H 0.209 0.791 24 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 2.830 -4.130 0.575 5.039 hybrid contribution -0.912 1.399 1.340 2.141 sum 1.917 -2.731 1.915 3.847 Atomic orbital electron populations 1.69901 1.09460 1.32117 1.30948 1.27082 0.95597 1.05426 0.90722 0.84971 0.79181 0.74452 0.79890 1.18441 1.18723 1.17362 1.19851 0.99013 0.91155 1.36357 0.88327 1.17779 0.91228 0.92866 0.88904 1.20762 1.00341 0.96404 1.03306 1.17420 0.85587 0.93558 0.93086 1.91338 1.53417 1.97388 1.71257 1.17882 1.02957 0.93272 1.10834 1.19835 1.01094 0.90043 1.01288 1.25109 1.01984 1.03339 1.06872 1.83515 1.33563 0.95570 1.54733 1.22804 1.00023 0.97549 1.00786 1.17752 0.96360 0.89815 1.05251 1.84760 1.15306 1.95577 1.33848 0.88875 0.85460 0.83821 0.79071 0.77432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.85 10.99 21.81 0.24 -38.61 14 2 C 0.03 1.41 5.13 85.20 0.44 1.84 14 3 Si 1.00 34.18 29.59 68.60 2.03 36.21 14 4 H -0.26 -8.69 7.11 99.48 0.71 -7.99 14 5 H -0.26 -8.57 7.11 99.48 0.71 -7.87 14 6 H -0.25 -8.28 7.11 99.48 0.71 -7.58 14 7 C -0.44 -21.62 8.68 23.28 0.20 -21.41 14 8 H 0.10 4.60 7.64 -2.91 -0.02 4.57 14 9 C 0.10 5.14 5.56 -21.25 -0.12 5.02 14 10 C -0.19 -9.73 8.52 22.32 0.19 -9.54 14 11 C 0.12 6.16 7.30 22.63 0.17 6.32 14 12 F -0.16 -7.19 17.16 44.97 0.77 -6.42 14 13 C -0.24 -11.31 5.89 -21.28 -0.13 -11.43 14 14 C -0.09 -3.60 10.04 21.68 0.22 -3.38 14 15 C -0.24 -8.05 11.10 66.68 0.74 -7.31 14 16 S 0.07 2.45 23.27 -56.49 -1.31 1.13 14 17 C -0.10 -4.46 6.42 23.02 0.15 -4.31 14 18 C -0.04 -1.90 6.77 23.28 0.16 -1.74 14 19 O -0.49 -21.56 12.74 -89.92 -1.15 -22.71 14 20 H 0.30 12.93 8.30 -92.71 -0.77 12.16 14 21 H 0.13 6.72 6.20 -2.91 -0.02 6.70 14 22 H 0.14 4.87 8.06 -2.91 -0.02 4.85 14 23 H 0.19 4.74 8.06 -2.91 -0.02 4.71 14 24 H 0.37 12.92 9.06 -74.06 -0.67 12.25 14 Total: -1.00 -57.71 237.79 3.19 -54.52 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: 0.59 Total: 21.82 kcal Atomic # 6 Polarization: -47.96 SS G_CDS: 2.01 Total: -45.95 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: 0.24 Total: -38.61 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -1.15 Total: -22.71 kcal Atomic # 9 Polarization: -7.19 SS G_CDS: 0.77 Total: -6.42 kcal Atomic # 14 Polarization: 34.18 SS G_CDS: 2.03 Total: 36.21 kcal Atomic # 16 Polarization: 2.45 SS G_CDS: -1.31 Total: 1.13 kcal Total: -57.71 3.19 -54.52 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307495811.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.668 kcal (2) G-P(sol) polarization free energy of solvation -57.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds