Wall clock time and date at job start Mon Mar 30 2020 05:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20762 * 120.00352 * 2 1 4 4 C 1.50701 * 119.99920 * 179.97438 * 2 1 3 5 5 C 1.50696 * 109.47410 * 180.02562 * 4 2 1 6 6 C 1.36626 * 120.12225 * 265.02919 * 5 4 2 7 7 C 1.38781 * 120.23831 * 180.02562 * 6 5 4 8 8 Cl 1.73593 * 119.76801 * 179.97438 * 7 6 5 9 9 C 1.38813 * 120.46599 * 359.97438 * 7 6 5 10 10 C 1.36599 * 120.24068 * 359.66857 * 9 7 6 11 11 C 1.40735 * 120.12001 * 84.99874 * 5 4 2 12 12 C 1.41349 * 120.22754 * 0.02605 * 11 5 4 13 13 H 1.07994 * 120.00154 * 29.51933 * 12 11 5 14 14 C 1.39928 * 119.99759 * 209.51721 * 12 11 5 15 15 N 1.30837 * 119.99775 * 197.23061 * 14 12 11 16 16 Si 1.86799 * 120.00302 * 17.22629 * 14 12 11 17 17 H 1.48497 * 109.47467 * 270.00170 * 16 14 12 18 18 H 1.48501 * 109.46921 * 30.00321 * 16 14 12 19 19 H 1.48506 * 109.47237 * 150.00074 * 16 14 12 20 20 H 1.08992 * 109.47239 * 240.00026 * 1 2 3 21 21 H 1.08998 * 109.46606 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.46697 * 119.99985 * 1 2 3 23 23 H 1.08997 * 109.46882 * 60.00232 * 4 2 1 24 24 H 1.09004 * 109.46961 * 300.00267 * 4 2 1 25 25 H 1.08000 * 119.87984 * 359.96609 * 6 5 4 26 26 H 1.08001 * 119.88472 * 179.97438 * 9 7 6 27 27 H 1.07997 * 120.12711 * 180.30609 * 10 9 7 28 28 H 0.97004 * 120.00278 * 355.45332 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7421 -1.0299 0.0011 6 6 4.4354 -1.0055 -1.1760 7 6 5.8000 -0.7528 -1.1782 8 17 6.6689 -0.7254 -2.6808 9 6 6.4750 -0.5217 0.0125 10 6 5.7996 -0.5343 1.1998 11 6 4.4166 -0.7962 1.2140 12 6 3.7091 -0.8190 2.4375 13 1 2.8341 -1.4429 2.5438 14 6 4.1426 -0.0330 3.5110 15 7 3.7194 -0.2893 4.7222 16 14 5.3255 1.3821 3.2148 17 1 6.7225 0.8924 3.3319 18 1 5.1067 1.9334 1.8534 19 1 5.0875 2.4456 4.2237 20 1 -0.3633 -0.5138 0.8899 21 1 -0.3632 1.0277 -0.0005 22 1 -0.3632 -0.5138 -0.8900 23 1 1.9972 -1.8770 -0.8892 24 1 1.9971 -1.8763 0.8908 25 1 3.9198 -1.1846 -2.1079 26 1 7.5371 -0.3264 -0.0001 27 1 6.3257 -0.3494 2.1247 28 1 3.0551 -0.9811 4.8677 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307531068.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:07 Heat of formation + Delta-G solvation = -59.565398 kcal Electronic energy + Delta-G solvation = -14605.028327 eV Core-core repulsion = 12031.285822 eV Total energy + Delta-G solvation = -2573.742505 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.72297 -39.34977 -37.15856 -35.58911 -33.72003 -31.99105 -31.24029 -28.19415 -26.31262 -23.44367 -22.03447 -20.41964 -20.03283 -17.63954 -16.86583 -16.57576 -16.23703 -15.95370 -15.54855 -15.36352 -14.74668 -14.24755 -13.96846 -13.63661 -13.16728 -13.09171 -12.87277 -12.73990 -12.53729 -12.27949 -11.92630 -11.77650 -11.66942 -11.18859 -10.88973 -10.52913 -9.57851 -9.53554 -9.17237 -6.56149 0.62069 0.74193 1.25060 1.31124 1.49205 1.58681 1.71508 2.11387 2.54406 3.23773 3.61738 4.02443 4.14673 4.33747 4.40994 4.51265 4.73166 4.78498 4.83378 4.86379 4.99108 5.24017 5.41162 5.44210 5.55303 5.62957 5.80551 5.98672 6.34132 6.54711 6.73994 6.83540 7.99442 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.018054 B = 0.012150 C = 0.008208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.531744 B = 2303.993798 C = 3410.293612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.350 3.650 3 O -0.499 6.499 4 C -0.109 4.109 5 C -0.171 4.171 6 C -0.065 4.065 7 C -0.153 4.153 8 Cl -0.098 7.098 9 C -0.070 4.070 10 C -0.254 4.254 11 C 0.089 3.911 12 C -0.524 4.524 13 H 0.071 0.929 14 C 0.018 3.982 15 N -0.839 5.839 16 Si 1.089 2.911 17 H -0.255 1.255 18 H -0.276 1.276 19 H -0.283 1.283 20 H 0.103 0.897 21 H 0.074 0.926 22 H 0.122 0.878 23 H 0.125 0.875 24 H 0.100 0.900 25 H 0.129 0.871 26 H 0.127 0.873 27 H 0.110 0.890 28 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.264 -2.144 -8.609 9.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.228 3.772 3 O -0.376 6.376 4 C -0.146 4.146 5 C -0.173 4.173 6 C -0.084 4.084 7 C -0.180 4.180 8 Cl -0.069 7.069 9 C -0.089 4.089 10 C -0.273 4.273 11 C 0.086 3.914 12 C -0.553 4.553 13 H 0.089 0.911 14 C -0.197 4.197 15 N -0.462 5.462 16 Si 0.913 3.087 17 H -0.181 1.181 18 H -0.201 1.201 19 H -0.210 1.210 20 H 0.121 0.879 21 H 0.093 0.907 22 H 0.141 0.859 23 H 0.143 0.857 24 H 0.118 0.882 25 H 0.147 0.853 26 H 0.145 0.855 27 H 0.127 0.873 28 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.081 -0.474 -7.870 8.154 hybrid contribution -0.830 -1.382 -0.409 1.663 sum -2.911 -1.856 -8.279 8.970 Atomic orbital electron populations 1.22298 0.91343 1.05024 1.06306 1.25245 0.93350 0.89928 0.68713 1.90389 1.73445 1.36539 1.37196 1.20914 0.91093 0.97438 1.05180 1.19421 0.95334 1.10525 0.91996 1.20422 0.92054 0.98224 0.97690 1.20399 0.92895 1.18935 0.85726 1.98240 1.77171 1.97933 1.33599 1.20511 0.99514 0.97850 0.90986 1.20997 0.94812 1.14186 0.97351 1.17880 0.91740 0.88536 0.93271 1.20595 1.12972 1.24408 0.97344 0.91131 1.27852 0.99359 1.01279 0.91214 1.70599 1.23679 1.29800 1.22157 0.83360 0.75424 0.73561 0.76333 1.18068 1.20122 1.20997 0.87876 0.90744 0.85929 0.85681 0.88245 0.85285 0.85520 0.87256 0.90609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.41 10.26 71.24 0.73 -3.68 15 2 C 0.35 12.23 7.26 29.10 0.21 12.44 15 3 O -0.50 -22.88 16.76 -1.46 -0.02 -22.91 15 4 C -0.11 -3.72 5.29 29.10 0.15 -3.57 15 5 C -0.17 -7.39 4.40 -19.63 -0.09 -7.47 15 6 C -0.07 -2.62 9.39 22.02 0.21 -2.41 15 7 C -0.15 -6.20 6.34 22.54 0.14 -6.06 15 8 Cl -0.10 -3.33 28.94 -2.72 -0.08 -3.41 15 9 C -0.07 -2.98 9.76 22.02 0.21 -2.77 15 10 C -0.25 -12.09 7.22 22.50 0.16 -11.92 15 11 C 0.09 4.36 5.13 -21.29 -0.11 4.25 15 12 C -0.52 -27.19 8.79 23.45 0.21 -26.99 15 13 H 0.07 3.66 6.61 -2.91 -0.02 3.64 15 14 C 0.02 0.97 5.42 85.25 0.46 1.44 15 15 N -0.84 -44.91 13.66 21.82 0.30 -44.61 15 16 Si 1.09 50.81 24.90 68.60 1.71 52.51 15 17 H -0.26 -10.86 6.44 99.48 0.64 -10.22 15 18 H -0.28 -13.60 7.02 99.48 0.70 -12.90 15 19 H -0.28 -12.73 7.11 99.48 0.71 -12.02 15 20 H 0.10 2.08 8.14 -2.39 -0.02 2.06 15 21 H 0.07 1.74 8.12 -2.39 -0.02 1.72 15 22 H 0.12 1.89 8.14 -2.39 -0.02 1.87 15 23 H 0.13 3.16 8.05 -2.39 -0.02 3.14 15 24 H 0.10 3.40 6.51 -2.38 -0.02 3.39 15 25 H 0.13 4.39 8.06 -2.91 -0.02 4.37 15 26 H 0.13 4.72 8.06 -2.91 -0.02 4.70 15 27 H 0.11 5.16 4.42 -2.91 -0.01 5.15 15 28 H 0.28 14.67 8.73 -92.71 -0.81 13.86 15 Total: -1.00 -61.66 258.92 5.26 -56.40 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: 1.07 Total: 8.76 kcal Atomic # 6 Polarization: -49.04 SS G_CDS: 2.30 Total: -46.75 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: 0.30 Total: -44.61 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.02 Total: -22.91 kcal Atomic # 14 Polarization: 50.81 SS G_CDS: 1.71 Total: 52.51 kcal Atomic # 17 Polarization: -3.33 SS G_CDS: -0.08 Total: -3.41 kcal Total: -61.66 5.26 -56.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307531068.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.164 kcal (2) G-P(sol) polarization free energy of solvation -61.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds