Wall clock time and date at job start Mon Mar 30 2020 05:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31089 * 1 3 3 Si 1.86805 * 120.00066 * 2 1 4 4 H 1.48498 * 109.46995 * 270.00189 * 3 2 1 5 5 H 1.48500 * 109.46753 * 29.99936 * 3 2 1 6 6 H 1.48494 * 109.47040 * 150.00014 * 3 2 1 7 7 C 1.39687 * 120.00060 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99916 * 191.09556 * 7 2 1 9 9 C 1.40797 * 120.00108 * 11.09067 * 7 2 1 10 10 C 1.36459 * 123.29735 * 22.42623 * 9 7 2 11 11 S 1.69980 * 111.94127 * 179.97438 * 10 9 7 12 12 C 1.75778 * 93.22936 * 359.97438 * 11 10 9 13 13 C 1.39280 * 110.20347 * 0.02562 * 12 11 10 14 14 C 1.40648 * 119.30483 * 179.97438 * 13 12 11 15 15 C 1.37473 * 120.44995 * 0.02562 * 14 13 12 16 16 C 1.38724 * 120.28440 * 359.72226 * 15 14 13 17 17 F 1.35100 * 119.96030 * 180.27494 * 16 15 14 18 18 C 1.38343 * 120.08033 * 0.55035 * 16 15 14 19 19 O 1.35982 * 119.86941 * 179.72433 * 18 16 15 20 20 H 0.97004 * 120.00032 * 359.97438 * 1 2 3 21 21 H 1.07996 * 124.03162 * 359.93794 * 10 9 7 22 22 H 1.08004 * 119.77262 * 180.02562 * 14 13 12 23 23 H 1.07997 * 119.85669 * 180.02562 * 15 14 13 24 24 H 0.96695 * 113.99827 * 269.72309 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3109 0.0000 0.0000 3 14 2.2449 1.6178 0.0000 4 1 2.4924 2.0464 -1.4001 5 1 1.4423 2.6526 0.7000 6 1 3.5424 1.4402 0.7000 7 6 2.0093 -1.2097 -0.0005 8 1 3.0743 -1.2185 0.1795 9 6 1.3251 -2.4176 -0.2356 10 6 0.1290 -2.4861 -0.8889 11 16 -0.4364 -4.0843 -1.0128 12 6 0.9544 -4.7472 -0.1665 13 6 1.8284 -3.7254 0.1966 14 6 3.0110 -4.0443 0.8880 15 6 3.3034 -5.3502 1.2029 16 6 2.4308 -6.3680 0.8463 17 9 2.7220 -7.6484 1.1639 18 6 1.2657 -6.0740 0.1608 19 8 0.4162 -7.0757 -0.1915 20 1 -0.4850 0.8401 0.0004 21 1 -0.3962 -1.6273 -1.2800 22 1 3.6940 -3.2579 1.1736 23 1 4.2139 -5.5841 1.7345 24 1 0.5957 -7.4555 -1.0624 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307565946.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:26 Heat of formation + Delta-G solvation = -59.711438 kcal Electronic energy + Delta-G solvation = -14029.144425 eV Core-core repulsion = 11333.978988 eV Total energy + Delta-G solvation = -2695.165436 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.41624 -38.94864 -36.74482 -34.63518 -32.21305 -29.38355 -27.87209 -26.06142 -22.71874 -21.97996 -19.90262 -18.21185 -17.24189 -16.55246 -16.12012 -15.53745 -15.05916 -14.80666 -14.36989 -13.60968 -13.34274 -12.95223 -12.38699 -12.27161 -11.77883 -11.42090 -11.26526 -10.84602 -10.70370 -10.28116 -10.21275 -9.96222 -9.47309 -9.29993 -8.49018 -7.50672 -6.82886 -6.71183 -4.40241 1.48222 1.66246 2.64191 2.91394 3.05348 3.07925 3.49280 3.70211 3.92589 4.19903 4.46392 4.87180 5.18593 5.40500 5.65530 5.80596 6.11548 6.41630 6.62813 6.71751 6.87849 7.09903 7.25039 7.60076 7.87094 7.95589 8.36018 8.68105 8.79848 10.21499 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.037215 B = 0.008067 C = 0.006723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.196263 B = 3469.978062 C = 4164.003251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.068 3.932 3 Si 0.915 3.085 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.434 4.434 8 H 0.077 0.923 9 C 0.078 3.922 10 C -0.353 4.353 11 S 0.077 5.923 12 C -0.152 4.152 13 C -0.059 4.059 14 C -0.051 4.051 15 C -0.167 4.167 16 C 0.064 3.936 17 F -0.144 7.144 18 C 0.089 3.911 19 O -0.487 6.487 20 H 0.278 0.722 21 H 0.166 0.834 22 H 0.132 0.868 23 H 0.131 0.869 24 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.477 -5.363 -0.935 6.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.149 4.149 3 Si 0.740 3.260 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.467 4.467 8 H 0.095 0.905 9 C 0.070 3.930 10 C -0.489 4.489 11 S 0.342 5.658 12 C -0.269 4.269 13 C -0.070 4.070 14 C -0.071 4.071 15 C -0.190 4.190 16 C 0.042 3.958 17 F -0.122 7.122 18 C 0.037 3.963 19 O -0.296 6.296 20 H 0.089 0.911 21 H 0.183 0.817 22 H 0.150 0.850 23 H 0.149 0.851 24 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 1.671 -5.623 -1.048 5.959 hybrid contribution 1.791 1.184 0.312 2.169 sum 3.462 -4.439 -0.736 5.678 Atomic orbital electron populations 1.69846 1.07306 1.28714 1.36725 1.25789 0.94884 1.01102 0.93078 0.86196 0.80161 0.80494 0.79176 1.19437 1.20341 1.18725 1.18943 0.95549 0.89689 1.42502 0.90484 1.17297 0.92982 0.89611 0.93121 1.24553 1.07095 0.97290 1.20004 1.82013 1.21517 1.01984 1.60310 1.22883 1.01827 0.95001 1.07171 1.19743 0.94417 0.93873 0.98988 1.20779 0.95568 0.94995 0.95747 1.20629 1.00446 0.92013 1.05903 1.17576 0.95078 0.78850 1.04299 1.91417 1.93434 1.36089 1.91295 1.17517 0.90152 0.85969 1.02623 1.84867 1.54510 1.50639 1.39536 0.91074 0.81653 0.85005 0.85066 0.76453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.47 10.79 55.54 0.60 -19.87 14 2 C 0.07 1.66 5.36 -17.33 -0.09 1.57 14 3 Si 0.91 18.38 29.57 -169.99 -5.03 13.35 14 4 H -0.27 -5.36 7.11 56.52 0.40 -4.96 14 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 14 6 H -0.26 -5.17 7.11 56.52 0.40 -4.77 14 7 C -0.43 -11.04 9.07 -38.07 -0.35 -11.39 14 8 H 0.08 1.84 7.69 -52.48 -0.40 1.43 14 9 C 0.08 2.01 5.69 -106.18 -0.60 1.40 14 10 C -0.35 -8.97 9.51 30.09 0.29 -8.69 14 11 S 0.08 1.69 22.93 -107.50 -2.46 -0.78 14 12 C -0.15 -3.36 6.39 -38.47 -0.25 -3.60 14 13 C -0.06 -1.36 6.02 -105.21 -0.63 -1.99 14 14 C -0.05 -1.00 9.86 -38.95 -0.38 -1.38 14 15 C -0.17 -2.92 9.99 -39.68 -0.40 -3.32 14 16 C 0.06 1.19 7.30 -39.36 -0.29 0.91 14 17 F -0.14 -2.55 17.09 2.25 0.04 -2.52 14 18 C 0.09 1.76 6.74 -38.82 -0.26 1.50 14 19 O -0.49 -8.57 13.32 -19.68 -0.26 -8.83 14 20 H 0.28 6.53 8.30 -40.82 -0.34 6.19 14 21 H 0.17 4.44 6.26 -52.49 -0.33 4.11 14 22 H 0.13 2.34 7.88 -52.48 -0.41 1.93 14 23 H 0.13 1.87 8.06 -52.49 -0.42 1.44 14 24 H 0.38 4.80 9.06 45.56 0.41 5.21 14 LS Contribution 238.19 15.07 3.59 3.59 Total: -1.00 -27.81 238.19 -6.78 -34.59 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -0.29 Total: 5.47 kcal Atomic # 6 Polarization: -22.03 SS G_CDS: -2.96 Total: -25.00 kcal Atomic # 7 Polarization: -20.47 SS G_CDS: 0.60 Total: -19.87 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: -0.26 Total: -8.83 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.04 Total: -2.52 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.35 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -2.46 Total: -0.78 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -27.81 -6.78 -34.59 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307565946.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.125 kcal (2) G-P(sol) polarization free energy of solvation -27.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds