Wall clock time and date at job start Mon Mar 30 2020 05:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31089 * 1 3 3 Si 1.86805 * 120.00066 * 2 1 4 4 H 1.48498 * 109.46995 * 270.00189 * 3 2 1 5 5 H 1.48500 * 109.46753 * 29.99936 * 3 2 1 6 6 H 1.48494 * 109.47040 * 150.00014 * 3 2 1 7 7 C 1.39687 * 120.00060 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99916 * 191.09556 * 7 2 1 9 9 C 1.40797 * 120.00108 * 11.09067 * 7 2 1 10 10 C 1.36459 * 123.29735 * 22.42623 * 9 7 2 11 11 S 1.69980 * 111.94127 * 179.97438 * 10 9 7 12 12 C 1.75778 * 93.22936 * 359.97438 * 11 10 9 13 13 C 1.39280 * 110.20347 * 0.02562 * 12 11 10 14 14 C 1.40648 * 119.30483 * 179.97438 * 13 12 11 15 15 C 1.37473 * 120.44995 * 0.02562 * 14 13 12 16 16 C 1.38724 * 120.28440 * 359.72226 * 15 14 13 17 17 F 1.35100 * 119.96030 * 180.27494 * 16 15 14 18 18 C 1.38343 * 120.08033 * 0.55035 * 16 15 14 19 19 O 1.35982 * 119.86941 * 179.72433 * 18 16 15 20 20 H 0.97004 * 120.00032 * 359.97438 * 1 2 3 21 21 H 1.07996 * 124.03162 * 359.93794 * 10 9 7 22 22 H 1.08004 * 119.77262 * 180.02562 * 14 13 12 23 23 H 1.07997 * 119.85669 * 180.02562 * 15 14 13 24 24 H 0.96695 * 113.99827 * 269.72309 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3109 0.0000 0.0000 3 14 2.2449 1.6178 0.0000 4 1 2.4924 2.0464 -1.4001 5 1 1.4423 2.6526 0.7000 6 1 3.5424 1.4402 0.7000 7 6 2.0093 -1.2097 -0.0005 8 1 3.0743 -1.2185 0.1795 9 6 1.3251 -2.4176 -0.2356 10 6 0.1290 -2.4861 -0.8889 11 16 -0.4364 -4.0843 -1.0128 12 6 0.9544 -4.7472 -0.1665 13 6 1.8284 -3.7254 0.1966 14 6 3.0110 -4.0443 0.8880 15 6 3.3034 -5.3502 1.2029 16 6 2.4308 -6.3680 0.8463 17 9 2.7220 -7.6484 1.1639 18 6 1.2657 -6.0740 0.1608 19 8 0.4162 -7.0757 -0.1915 20 1 -0.4850 0.8401 0.0004 21 1 -0.3962 -1.6273 -1.2800 22 1 3.6940 -3.2579 1.1736 23 1 4.2139 -5.5841 1.7345 24 1 0.5957 -7.4555 -1.0624 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307565946.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:26 Heat of formation + Delta-G solvation = -76.878647 kcal Electronic energy + Delta-G solvation = -14029.888851 eV Core-core repulsion = 11333.978988 eV Total energy + Delta-G solvation = -2695.909862 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.87160 -40.50992 -38.27834 -36.35021 -33.96651 -30.97399 -29.52894 -27.90480 -24.33418 -23.56821 -21.63783 -19.75567 -18.84833 -18.19723 -17.80860 -17.08761 -16.60491 -16.45704 -15.85073 -15.11603 -14.95856 -14.52311 -14.07314 -13.89728 -13.40480 -13.15061 -12.87966 -12.52355 -12.38747 -11.87205 -11.82372 -11.56815 -11.22751 -11.06192 -10.13235 -9.19026 -8.62187 -8.48685 -6.30902 -0.11334 0.12074 0.97882 1.28771 1.40953 1.53872 1.80655 1.90552 2.23467 2.54855 2.99742 3.32617 3.40956 3.93010 4.18235 4.21773 4.58466 4.92431 5.04786 5.12332 5.22482 5.34233 5.60352 5.86151 5.96513 6.47584 6.67113 6.80764 6.92688 8.39951 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.037215 B = 0.008067 C = 0.006723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.196263 B = 3469.978062 C = 4164.003251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.023 3.977 3 Si 0.989 3.011 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.252 1.252 7 C -0.462 4.462 8 H 0.086 0.914 9 C 0.057 3.943 10 C -0.389 4.389 11 S 0.093 5.907 12 C -0.167 4.167 13 C -0.088 4.088 14 C -0.057 4.057 15 C -0.144 4.144 16 C 0.069 3.931 17 F -0.134 7.134 18 C 0.089 3.911 19 O -0.492 6.492 20 H 0.283 0.717 21 H 0.141 0.859 22 H 0.148 0.852 23 H 0.174 0.826 24 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.323 -6.160 -0.143 8.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.190 4.190 3 Si 0.810 3.190 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.175 1.175 7 C -0.495 4.495 8 H 0.104 0.896 9 C 0.048 3.952 10 C -0.525 4.525 11 S 0.357 5.643 12 C -0.284 4.284 13 C -0.099 4.099 14 C -0.076 4.076 15 C -0.166 4.166 16 C 0.047 3.953 17 F -0.113 7.113 18 C 0.037 3.963 19 O -0.304 6.304 20 H 0.094 0.906 21 H 0.159 0.841 22 H 0.166 0.834 23 H 0.191 0.809 24 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 3.523 -6.457 -0.268 7.361 hybrid contribution 1.239 1.257 0.091 1.767 sum 4.762 -5.200 -0.176 7.053 Atomic orbital electron populations 1.69957 1.08964 1.29864 1.37300 1.26750 0.95605 1.04572 0.92055 0.85086 0.79012 0.75681 0.79247 1.19094 1.19882 1.17539 1.19329 0.96203 0.90507 1.43447 0.89556 1.17727 0.93290 0.91204 0.92961 1.24444 1.07922 0.98553 1.21582 1.81619 1.21892 0.99751 1.60999 1.23074 1.01706 0.95993 1.07584 1.19882 0.96265 0.92961 1.00742 1.20991 0.94712 0.96533 0.95370 1.21009 1.01134 0.90503 1.03924 1.17675 0.94678 0.79497 1.03436 1.91451 1.93257 1.35505 1.91068 1.17552 0.90641 0.85545 1.02560 1.84804 1.54365 1.49879 1.41333 0.90634 0.84131 0.83408 0.80859 0.73746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.08 10.79 21.79 0.24 -43.84 14 2 C 0.02 1.15 5.36 85.15 0.46 1.60 14 3 Si 0.99 37.62 29.57 68.60 2.03 39.65 14 4 H -0.27 -9.90 7.11 99.48 0.71 -9.20 14 5 H -0.27 -10.13 7.11 99.48 0.71 -9.42 14 6 H -0.25 -9.05 7.11 99.48 0.71 -8.34 14 7 C -0.46 -23.90 9.07 23.25 0.21 -23.69 14 8 H 0.09 4.12 7.69 -2.91 -0.02 4.09 14 9 C 0.06 3.00 5.69 -20.87 -0.12 2.88 14 10 C -0.39 -20.65 9.51 67.40 0.64 -20.01 14 11 S 0.09 4.18 22.93 -56.49 -1.30 2.89 14 12 C -0.17 -7.30 6.39 22.99 0.15 -7.15 14 13 C -0.09 -4.03 6.02 -20.24 -0.12 -4.15 14 14 C -0.06 -2.09 9.86 22.68 0.22 -1.87 14 15 C -0.14 -4.47 9.99 22.21 0.22 -4.25 14 16 C 0.07 2.35 7.30 22.41 0.16 2.52 14 17 F -0.13 -4.25 17.09 44.97 0.77 -3.48 14 18 C 0.09 3.34 6.74 22.76 0.15 3.50 14 19 O -0.49 -16.22 13.32 -93.34 -1.24 -17.46 14 20 H 0.28 13.68 8.30 -92.71 -0.77 12.91 14 21 H 0.14 8.04 6.26 -2.91 -0.02 8.02 14 22 H 0.15 4.91 7.88 -2.91 -0.02 4.89 14 23 H 0.17 3.95 8.06 -2.91 -0.02 3.93 14 24 H 0.40 9.18 9.06 -74.06 -0.67 8.51 14 Total: -1.00 -60.53 238.19 3.06 -57.47 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 0.59 Total: 15.39 kcal Atomic # 6 Polarization: -52.59 SS G_CDS: 1.98 Total: -50.61 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: 0.24 Total: -43.84 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -1.24 Total: -17.46 kcal Atomic # 9 Polarization: -4.25 SS G_CDS: 0.77 Total: -3.48 kcal Atomic # 14 Polarization: 37.62 SS G_CDS: 2.03 Total: 39.65 kcal Atomic # 16 Polarization: 4.18 SS G_CDS: -1.30 Total: 2.89 kcal Total: -60.53 3.06 -57.47 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307565946.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.411 kcal (2) G-P(sol) polarization free energy of solvation -60.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds