Wall clock time and date at job start Mon Mar 30 2020 05:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50705 * 109.47343 * 2 1 4 4 O 1.21244 * 119.99706 * 359.97438 * 3 2 1 5 5 C 1.47218 * 119.99869 * 179.97438 * 3 2 1 6 6 C 1.40153 * 120.05234 * 359.97438 * 5 3 2 7 7 C 1.38383 * 120.32286 * 180.02562 * 6 5 3 8 8 Cl 1.73599 * 119.79613 * 179.97438 * 7 6 5 9 9 C 1.37911 * 120.41254 * 359.97438 * 7 6 5 10 10 C 1.40753 * 120.08373 * 359.97438 * 9 7 6 11 11 C 1.41446 * 120.15531 * 180.02562 * 10 9 7 12 12 H 1.08004 * 120.00293 * 24.44012 * 11 10 9 13 13 C 1.39938 * 119.99969 * 204.43336 * 11 10 9 14 14 N 1.30828 * 120.00053 * 17.87099 * 13 11 10 15 15 Si 1.86796 * 120.00050 * 197.86505 * 13 11 10 16 16 H 1.48508 * 109.47130 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46981 * 120.00065 * 15 13 11 18 18 H 1.48499 * 109.47311 * 240.00421 * 15 13 11 19 19 C 1.39288 * 120.04557 * 179.97438 * 5 3 2 20 20 H 1.09005 * 109.47449 * 180.02562 * 1 2 3 21 21 H 1.09007 * 109.47053 * 300.00029 * 1 2 3 22 22 H 1.09000 * 109.47590 * 59.99939 * 1 2 3 23 23 H 1.08999 * 109.47285 * 239.99768 * 2 1 3 24 24 H 1.09008 * 109.47524 * 119.99719 * 2 1 3 25 25 H 1.08003 * 119.84118 * 0.02562 * 6 5 3 26 26 H 1.07991 * 119.95695 * 179.97438 * 9 7 6 27 27 H 0.96997 * 120.00369 * 180.02562 * 14 13 11 28 28 H 1.08007 * 120.20572 * 359.71406 * 19 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2444 2.3424 -0.0005 5 6 3.4797 1.6898 0.0006 6 6 4.3914 0.6253 0.0017 7 6 5.7531 0.8716 0.0027 8 17 6.8702 -0.4572 0.0047 9 6 6.2284 2.1662 0.0022 10 6 5.3282 3.2483 0.0000 11 6 5.8140 4.5767 -0.0010 12 1 6.7995 4.7910 -0.3873 13 6 5.0175 5.6134 0.4982 14 7 3.9980 5.3407 1.2714 15 14 5.4101 7.3864 0.0608 16 1 6.6039 7.4259 -0.8217 17 1 4.2521 7.9899 -0.6464 18 1 5.6862 8.1531 1.3023 19 6 3.9452 3.0026 0.0000 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8933 -0.5139 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 4.0294 -0.3923 0.0017 26 1 7.2925 2.3500 0.0035 27 1 3.4457 6.0592 1.6172 28 1 3.2470 3.8266 -0.0055 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307641768.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:32 Heat of formation + Delta-G solvation = -47.597146 kcal Electronic energy + Delta-G solvation = -14189.221302 eV Core-core repulsion = 11615.997780 eV Total energy + Delta-G solvation = -2573.223522 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.07975 -37.26633 -35.59491 -33.82096 -32.48330 -30.39641 -29.35474 -25.76527 -24.70357 -21.77762 -21.01244 -18.93838 -17.42434 -15.89776 -15.23957 -14.94372 -14.81549 -14.54404 -13.71706 -13.28779 -13.00771 -12.80187 -12.19861 -11.98758 -11.71494 -11.46508 -11.32535 -11.13051 -10.86738 -10.72852 -10.40438 -10.28218 -10.20991 -9.99296 -9.33637 -8.87313 -7.84638 -7.57762 -6.98056 -4.59858 1.76452 2.53889 2.94178 2.99602 3.03941 3.08526 3.37857 3.80327 4.40142 4.70303 5.31698 5.33393 5.44151 5.66007 6.00253 6.10704 6.13083 6.18987 6.39220 6.54473 6.69737 6.74851 6.97431 6.99738 7.39145 7.50544 7.67878 7.87026 8.27815 8.31323 8.57612 8.61394 9.96703 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.017351 B = 0.009523 C = 0.006274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.340178 B = 2939.634569 C = 4461.560622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.169 4.169 3 C 0.399 3.601 4 O -0.466 6.466 5 C -0.151 4.151 6 C -0.201 4.201 7 C 0.001 3.999 8 Cl -0.121 7.121 9 C -0.204 4.204 10 C 0.103 3.897 11 C -0.451 4.451 12 H 0.086 0.914 13 C 0.073 3.927 14 N -0.780 5.780 15 Si 0.914 3.086 16 H -0.258 1.258 17 H -0.269 1.269 18 H -0.272 1.272 19 C -0.088 4.088 20 H 0.054 0.946 21 H 0.057 0.943 22 H 0.057 0.943 23 H 0.093 0.907 24 H 0.094 0.906 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.287 0.713 28 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.335 -5.650 -1.563 6.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.206 4.206 3 C 0.278 3.722 4 O -0.342 6.342 5 C -0.152 4.152 6 C -0.222 4.222 7 C -0.025 4.025 8 Cl -0.092 7.092 9 C -0.224 4.224 10 C 0.100 3.900 11 C -0.480 4.480 12 H 0.104 0.896 13 C -0.147 4.147 14 N -0.404 5.404 15 Si 0.737 3.263 16 H -0.181 1.181 17 H -0.194 1.194 18 H -0.197 1.197 19 C -0.107 4.107 20 H 0.073 0.927 21 H 0.076 0.924 22 H 0.076 0.924 23 H 0.112 0.888 24 H 0.112 0.888 25 H 0.127 0.873 26 H 0.126 0.874 27 H 0.098 0.902 28 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.844 -5.165 -1.411 5.663 hybrid contribution 0.396 0.527 -0.021 0.660 sum -1.447 -4.638 -1.432 5.065 Atomic orbital electron populations 1.21580 0.94494 1.00971 1.02820 1.21962 0.97324 0.97118 1.04244 1.22521 0.88777 0.90225 0.70679 1.90451 1.58560 1.47932 1.37292 1.19982 0.92827 0.94562 1.07847 1.20341 0.90516 0.97324 1.13986 1.20440 0.89240 0.87081 1.05789 1.98268 1.64021 1.49485 1.97450 1.21018 0.99050 0.90020 1.12351 1.17500 0.90814 0.92614 0.89038 1.19657 1.02391 0.90720 1.35186 0.89611 1.26008 0.93859 1.02382 0.92486 1.69776 1.13597 1.35960 1.21069 0.86158 0.79901 0.80736 0.79462 1.18148 1.19402 1.19727 1.21914 0.96360 0.94569 0.97864 0.92677 0.92353 0.92402 0.88829 0.88810 0.87350 0.87417 0.90177 0.84529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.20 37.15 0.34 -1.58 15 2 C -0.17 -2.53 5.02 -27.88 -0.14 -2.67 15 3 C 0.40 8.07 7.12 -30.66 -0.22 7.86 15 4 O -0.47 -10.70 15.96 5.59 0.09 -10.62 15 5 C -0.15 -3.39 5.86 -105.14 -0.62 -4.00 15 6 C -0.20 -4.16 9.25 -38.81 -0.36 -4.52 15 7 C 0.00 0.01 6.30 -39.65 -0.25 -0.24 15 8 Cl -0.12 -2.19 28.94 -51.86 -1.50 -3.69 15 9 C -0.20 -4.74 9.55 -38.75 -0.37 -5.11 15 10 C 0.10 2.62 5.57 -106.89 -0.60 2.02 15 11 C -0.45 -11.34 9.05 -37.72 -0.34 -11.68 15 12 H 0.09 2.05 7.91 -52.48 -0.41 1.63 15 13 C 0.07 1.75 5.14 -17.34 -0.09 1.66 15 14 N -0.78 -19.70 10.95 55.55 0.61 -19.09 15 15 Si 0.91 17.95 29.59 -169.99 -5.03 12.92 15 16 H -0.26 -4.98 7.11 56.52 0.40 -4.58 15 17 H -0.27 -5.26 7.11 56.52 0.40 -4.86 15 18 H -0.27 -5.25 7.11 56.52 0.40 -4.85 15 19 C -0.09 -2.22 8.24 -38.35 -0.32 -2.54 15 20 H 0.05 0.59 8.14 -51.93 -0.42 0.17 15 21 H 0.06 0.83 8.10 -51.92 -0.42 0.41 15 22 H 0.06 0.81 8.10 -51.93 -0.42 0.39 15 23 H 0.09 1.25 8.08 -51.93 -0.42 0.83 15 24 H 0.09 1.28 8.08 -51.92 -0.42 0.86 15 25 H 0.11 1.92 7.02 -52.48 -0.37 1.56 15 26 H 0.11 2.38 8.06 -52.49 -0.42 1.96 15 27 H 0.29 6.61 8.30 -40.82 -0.34 6.27 15 28 H 0.14 3.71 5.74 -52.48 -0.30 3.41 15 LS Contribution 264.59 15.07 3.99 3.99 Total: -1.00 -26.55 264.59 -7.54 -34.09 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -2.74 Total: 3.20 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: -2.95 Total: -20.80 kcal Atomic # 7 Polarization: -19.70 SS G_CDS: 0.61 Total: -19.09 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.09 Total: -10.62 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.03 Total: 12.92 kcal Atomic # 17 Polarization: -2.19 SS G_CDS: -1.50 Total: -3.69 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -26.55 -7.54 -34.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307641768.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.506 kcal (2) G-P(sol) polarization free energy of solvation -26.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds