Wall clock time and date at job start Mon Mar 30 2020 05:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50705 * 109.47343 * 2 1 4 4 O 1.21244 * 119.99706 * 359.97438 * 3 2 1 5 5 C 1.47218 * 119.99869 * 179.97438 * 3 2 1 6 6 C 1.40153 * 120.05234 * 359.97438 * 5 3 2 7 7 C 1.38383 * 120.32286 * 180.02562 * 6 5 3 8 8 Cl 1.73599 * 119.79613 * 179.97438 * 7 6 5 9 9 C 1.37911 * 120.41254 * 359.97438 * 7 6 5 10 10 C 1.40753 * 120.08373 * 359.97438 * 9 7 6 11 11 C 1.41446 * 120.15531 * 180.02562 * 10 9 7 12 12 H 1.08004 * 120.00293 * 24.44012 * 11 10 9 13 13 C 1.39938 * 119.99969 * 204.43336 * 11 10 9 14 14 N 1.30828 * 120.00053 * 17.87099 * 13 11 10 15 15 Si 1.86796 * 120.00050 * 197.86505 * 13 11 10 16 16 H 1.48508 * 109.47130 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46981 * 120.00065 * 15 13 11 18 18 H 1.48499 * 109.47311 * 240.00421 * 15 13 11 19 19 C 1.39288 * 120.04557 * 179.97438 * 5 3 2 20 20 H 1.09005 * 109.47449 * 180.02562 * 1 2 3 21 21 H 1.09007 * 109.47053 * 300.00029 * 1 2 3 22 22 H 1.09000 * 109.47590 * 59.99939 * 1 2 3 23 23 H 1.08999 * 109.47285 * 239.99768 * 2 1 3 24 24 H 1.09008 * 109.47524 * 119.99719 * 2 1 3 25 25 H 1.08003 * 119.84118 * 0.02562 * 6 5 3 26 26 H 1.07991 * 119.95695 * 179.97438 * 9 7 6 27 27 H 0.96997 * 120.00369 * 180.02562 * 14 13 11 28 28 H 1.08007 * 120.20572 * 359.71406 * 19 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2444 2.3424 -0.0005 5 6 3.4797 1.6898 0.0006 6 6 4.3914 0.6253 0.0017 7 6 5.7531 0.8716 0.0027 8 17 6.8702 -0.4572 0.0047 9 6 6.2284 2.1662 0.0022 10 6 5.3282 3.2483 0.0000 11 6 5.8140 4.5767 -0.0010 12 1 6.7995 4.7910 -0.3873 13 6 5.0175 5.6134 0.4982 14 7 3.9980 5.3407 1.2714 15 14 5.4101 7.3864 0.0608 16 1 6.6039 7.4259 -0.8217 17 1 4.2521 7.9899 -0.6464 18 1 5.6862 8.1531 1.3023 19 6 3.9452 3.0026 0.0000 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8933 -0.5139 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 4.0294 -0.3923 0.0017 26 1 7.2925 2.3500 0.0035 27 1 3.4457 6.0592 1.6172 28 1 3.2470 3.8266 -0.0055 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307641768.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:31 Heat of formation + Delta-G solvation = -60.784004 kcal Electronic energy + Delta-G solvation = -14189.793128 eV Core-core repulsion = 11615.997780 eV Total energy + Delta-G solvation = -2573.795347 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.74081 -39.00012 -37.21759 -35.59741 -33.80244 -32.10810 -31.13465 -27.53184 -26.20227 -23.36279 -22.74348 -20.57774 -19.14611 -17.65345 -16.87885 -16.48404 -16.31178 -16.24671 -15.42768 -14.93863 -14.68888 -14.29186 -13.82927 -13.41544 -13.13890 -13.02457 -12.84356 -12.60303 -12.34566 -12.07379 -11.99681 -11.96883 -11.92565 -11.65197 -11.10715 -10.49136 -9.65634 -9.34739 -8.76915 -6.49103 0.03485 0.76683 1.33990 1.36482 1.40338 1.52782 1.71747 2.15626 2.63040 3.24440 3.50267 4.09949 4.31291 4.36910 4.43944 4.70961 4.80863 4.87167 4.98256 5.05842 5.09093 5.15265 5.20425 5.34431 5.61458 5.72276 5.85859 6.02254 6.41844 6.69901 6.75560 6.77445 8.20409 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.017351 B = 0.009523 C = 0.006274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.340178 B = 2939.634569 C = 4461.560622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.159 4.159 3 C 0.394 3.606 4 O -0.502 6.502 5 C -0.159 4.159 6 C -0.180 4.180 7 C -0.007 4.007 8 Cl -0.085 7.085 9 C -0.210 4.210 10 C 0.077 3.923 11 C -0.488 4.488 12 H 0.087 0.913 13 C 0.033 3.967 14 N -0.820 5.820 15 Si 0.985 3.015 16 H -0.251 1.251 17 H -0.268 1.268 18 H -0.263 1.263 19 C -0.124 4.124 20 H 0.091 0.909 21 H 0.044 0.956 22 H 0.046 0.954 23 H 0.121 0.879 24 H 0.117 0.883 25 H 0.149 0.851 26 H 0.113 0.887 27 H 0.291 0.709 28 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.135 -7.728 -1.856 8.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.196 4.196 3 C 0.276 3.724 4 O -0.381 6.381 5 C -0.161 4.161 6 C -0.200 4.200 7 C -0.033 4.033 8 Cl -0.056 7.056 9 C -0.230 4.230 10 C 0.074 3.926 11 C -0.516 4.516 12 H 0.105 0.895 13 C -0.183 4.183 14 N -0.445 5.445 15 Si 0.805 3.195 16 H -0.175 1.175 17 H -0.193 1.193 18 H -0.188 1.188 19 C -0.144 4.144 20 H 0.110 0.890 21 H 0.063 0.937 22 H 0.065 0.935 23 H 0.139 0.861 24 H 0.135 0.865 25 H 0.167 0.833 26 H 0.131 0.869 27 H 0.102 0.898 28 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.629 -7.275 -1.705 7.648 hybrid contribution 0.372 0.952 0.066 1.025 sum -1.256 -6.323 -1.639 6.652 Atomic orbital electron populations 1.21596 0.93445 1.02953 1.01702 1.22013 0.98212 0.92927 1.06469 1.23202 0.87469 0.92577 0.69153 1.90441 1.58982 1.49823 1.38877 1.20423 0.94988 0.93995 1.06683 1.20744 0.89895 0.98557 1.10833 1.20572 0.90401 0.87600 1.04769 1.98277 1.62831 1.47247 1.97246 1.21175 0.99097 0.90703 1.12029 1.17798 0.91365 0.93610 0.89784 1.19916 1.03103 0.91667 1.36952 0.89456 1.26862 0.93348 1.06408 0.91702 1.69853 1.14897 1.37311 1.22424 0.85105 0.79681 0.75318 0.79384 1.17458 1.19261 1.18802 1.21775 0.96109 0.95368 1.01115 0.89016 0.93725 0.93455 0.86089 0.86452 0.83326 0.86892 0.89845 0.87457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 9.20 71.98 0.66 -2.73 15 2 C -0.16 -4.21 5.02 29.85 0.15 -4.06 15 3 C 0.39 15.68 7.12 28.05 0.20 15.88 15 4 O -0.50 -23.61 15.96 -2.92 -0.05 -23.65 15 5 C -0.16 -7.12 5.86 -20.20 -0.12 -7.24 15 6 C -0.18 -7.00 9.25 22.77 0.21 -6.79 15 7 C -0.01 -0.29 6.30 22.23 0.14 -0.15 15 8 Cl -0.08 -2.81 28.94 -2.72 -0.08 -2.89 15 9 C -0.21 -9.76 9.55 22.81 0.22 -9.54 15 10 C 0.08 4.05 5.57 -21.33 -0.12 3.93 15 11 C -0.49 -25.53 9.05 23.47 0.21 -25.32 15 12 H 0.09 4.33 7.91 -2.91 -0.02 4.31 15 13 C 0.03 1.64 5.14 85.25 0.44 2.08 15 14 N -0.82 -43.51 10.95 21.82 0.24 -43.27 15 15 Si 0.99 37.82 29.59 68.60 2.03 39.85 15 16 H -0.25 -9.26 7.11 99.48 0.71 -8.55 15 17 H -0.27 -10.11 7.11 99.48 0.71 -9.40 15 18 H -0.26 -9.65 7.11 99.48 0.71 -8.94 15 19 C -0.12 -6.54 8.24 23.07 0.19 -6.35 15 20 H 0.09 1.58 8.14 -2.38 -0.02 1.56 15 21 H 0.04 1.19 8.10 -2.38 -0.02 1.18 15 22 H 0.05 1.24 8.10 -2.39 -0.02 1.22 15 23 H 0.12 2.62 8.08 -2.39 -0.02 2.60 15 24 H 0.12 2.63 8.08 -2.38 -0.02 2.61 15 25 H 0.15 4.52 7.02 -2.91 -0.02 4.50 15 26 H 0.11 5.00 8.06 -2.92 -0.02 4.97 15 27 H 0.29 14.08 8.30 -92.71 -0.77 13.31 15 28 H 0.11 6.23 5.74 -2.91 -0.02 6.22 15 Total: -1.00 -60.17 264.59 5.50 -54.67 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: 1.17 Total: 15.59 kcal Atomic # 6 Polarization: -42.49 SS G_CDS: 2.18 Total: -40.30 kcal Atomic # 7 Polarization: -43.51 SS G_CDS: 0.24 Total: -43.27 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.05 Total: -23.65 kcal Atomic # 14 Polarization: 37.82 SS G_CDS: 2.03 Total: 39.85 kcal Atomic # 17 Polarization: -2.81 SS G_CDS: -0.08 Total: -2.89 kcal Total: -60.17 5.50 -54.67 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307641768.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.114 kcal (2) G-P(sol) polarization free energy of solvation -60.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds