Wall clock time and date at job start Mon Mar 30 2020 05:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99985 * 2 1 4 4 H 1.48504 * 109.46850 * 269.99425 * 3 2 1 5 5 H 1.48494 * 109.47483 * 29.99128 * 3 2 1 6 6 H 1.48497 * 109.47142 * 149.99575 * 3 2 1 7 7 C 1.37875 * 119.99739 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00299 * 0.02562 * 7 2 1 9 9 C 1.50708 * 119.99562 * 180.02562 * 7 2 1 10 10 C 1.50702 * 109.46575 * 180.02562 * 9 7 2 11 11 C 1.37943 * 119.96933 * 265.24977 * 10 9 7 12 12 C 1.38626 * 120.44826 * 180.25917 * 11 10 9 13 13 C 1.37749 * 120.38053 * 359.74653 * 12 11 10 14 14 C 1.39774 * 119.92349 * 359.97438 * 13 12 11 15 15 C 1.47243 * 120.21982 * 179.97438 * 14 13 12 16 16 O 1.21525 * 120.00165 * 180.02562 * 15 14 13 17 17 O 1.34779 * 119.99637 * 0.02616 * 15 14 13 18 18 C 1.39011 * 119.96977 * 85.00074 * 10 9 7 19 19 S 1.76195 * 120.18535 * 0.02562 * 18 10 9 20 20 H 0.97002 * 120.00206 * 0.02562 * 1 2 3 21 21 H 1.08995 * 109.46989 * 60.00178 * 9 7 2 22 22 H 1.08991 * 109.46846 * 299.99900 * 9 7 2 23 23 H 1.08004 * 119.77657 * 359.97438 * 11 10 9 24 24 H 1.08006 * 119.80630 * 179.76546 * 12 11 10 25 25 H 1.07998 * 120.03643 * 180.02562 * 13 12 11 26 26 H 0.96702 * 116.99334 * 179.97438 * 17 15 14 27 27 H 1.41005 * 99.99931 * 269.71934 * 19 18 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6998 6 1 3.5466 1.4402 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0138 -2.6149 0.0010 11 6 4.3362 -3.2319 1.1919 12 6 4.8042 -4.5367 1.2029 13 6 4.9480 -5.2352 0.0243 14 6 4.6204 -4.6273 -1.1909 15 6 4.7721 -5.3677 -2.4546 16 8 4.4865 -4.8351 -3.5089 17 8 5.2277 -6.6360 -2.4419 18 6 4.1467 -3.3043 -1.1988 19 16 3.7302 -2.5214 -2.7213 20 1 -0.4850 0.8400 -0.0004 21 1 3.8744 -0.6800 0.8911 22 1 3.8751 -0.6804 -0.8888 23 1 4.2278 -2.6931 2.1216 24 1 5.0572 -5.0084 2.1409 25 1 5.3127 -6.2516 0.0394 26 1 5.3101 -7.0814 -3.2963 27 1 2.3695 -2.8788 -2.8161 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307643329.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:04 Heat of formation + Delta-G solvation = -56.674559 kcal Electronic energy + Delta-G solvation = -14324.831902 eV Core-core repulsion = 11753.258460 eV Total energy + Delta-G solvation = -2571.573442 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.045 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.10398 -38.43665 -35.82711 -33.65998 -31.73903 -30.97401 -27.81581 -24.53781 -23.26664 -21.43522 -20.39739 -17.66405 -17.40835 -16.87538 -16.40460 -15.47626 -15.08055 -14.98447 -14.34485 -14.01488 -13.20607 -12.98318 -12.56470 -12.27047 -11.85426 -11.51494 -11.38471 -11.29735 -10.66790 -10.59059 -10.31010 -10.11040 -10.03861 -9.50303 -8.67697 -8.61763 -8.18909 -6.74300 -6.12891 -4.13019 0.82410 1.52394 2.38366 2.86301 3.17874 3.30041 3.35413 3.36968 3.38927 4.07975 4.39225 5.02173 5.18732 5.24533 5.27306 5.62719 5.71788 5.88082 6.20172 6.40242 6.52212 6.62703 6.67433 6.95445 7.13355 7.32244 7.61883 8.12599 8.38762 8.86616 9.47051 10.99769 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.032895 B = 0.008117 C = 0.007131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.979648 B = 3448.897405 C = 3925.577774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.074 3.926 3 Si 0.878 3.122 4 H -0.272 1.272 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.512 4.512 8 H 0.067 0.933 9 C 0.006 3.994 10 C 0.000 4.000 11 C -0.094 4.094 12 C -0.114 4.114 13 C -0.093 4.093 14 C -0.097 4.097 15 C 0.512 3.488 16 O -0.474 6.474 17 O -0.522 6.522 18 C -0.048 4.048 19 S -0.125 6.125 20 H 0.265 0.735 21 H 0.032 0.968 22 H 0.050 0.950 23 H 0.133 0.867 24 H 0.128 0.872 25 H 0.134 0.866 26 H 0.408 0.592 27 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.890 -9.863 -0.362 14.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.128 4.128 3 Si 0.705 3.295 4 H -0.197 1.197 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.550 4.550 8 H 0.085 0.915 9 C -0.031 4.031 10 C -0.002 4.002 11 C -0.114 4.114 12 C -0.132 4.132 13 C -0.112 4.112 14 C -0.101 4.101 15 C 0.354 3.646 16 O -0.360 6.360 17 O -0.335 6.335 18 C -0.161 4.161 19 S 0.033 5.967 20 H 0.075 0.925 21 H 0.050 0.950 22 H 0.068 0.932 23 H 0.151 0.849 24 H 0.146 0.854 25 H 0.152 0.848 26 H 0.266 0.734 27 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.597 -8.870 -1.133 13.865 hybrid contribution -0.434 -0.225 0.394 0.628 sum 10.162 -9.095 -0.739 13.658 Atomic orbital electron populations 1.69890 1.06342 1.27157 1.50423 1.24920 0.94675 0.99074 0.94129 0.86792 0.80318 0.83400 0.79022 1.19692 1.21389 1.18786 1.20714 0.87785 0.94455 1.52042 0.91479 1.19051 0.97752 0.87478 0.98807 1.20707 0.90553 0.98424 0.90564 1.21413 0.96894 0.94678 0.98369 1.21216 0.99311 0.94763 0.97914 1.21245 0.99053 0.99862 0.91083 1.19190 1.06080 0.93616 0.91204 1.20886 0.74382 0.79500 0.89869 1.91118 1.44813 1.67195 1.32881 1.84583 1.79490 1.28365 1.41030 1.21357 1.03539 0.93959 0.97207 1.86346 1.16062 1.71060 1.23207 0.92505 0.95000 0.93196 0.84940 0.85377 0.84794 0.73424 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.08 13.96 55.43 0.77 -26.31 15 2 C 0.07 2.09 5.47 -17.82 -0.10 1.99 15 3 Si 0.88 21.07 27.47 -169.99 -4.67 16.40 15 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 15 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 15 6 H -0.26 -5.97 6.54 56.52 0.37 -5.60 15 7 C -0.51 -14.00 9.64 -34.44 -0.33 -14.33 15 8 H 0.07 2.02 7.98 -52.49 -0.42 1.60 15 9 C 0.01 0.15 3.64 -29.03 -0.11 0.04 15 10 C 0.00 0.00 5.08 -104.44 -0.53 -0.53 15 11 C -0.09 -1.58 9.66 -39.55 -0.38 -1.96 15 12 C -0.11 -1.58 10.02 -39.62 -0.40 -1.98 15 13 C -0.09 -1.32 9.61 -39.19 -0.38 -1.70 15 14 C -0.10 -1.65 5.89 -104.80 -0.62 -2.27 15 15 C 0.51 8.11 8.25 34.39 0.28 8.39 15 16 O -0.47 -8.64 14.56 -19.28 -0.28 -8.93 15 17 O -0.52 -6.03 12.68 -40.71 -0.52 -6.54 15 18 C -0.05 -0.96 6.16 -38.43 -0.24 -1.20 15 19 S -0.13 -2.61 21.01 -107.50 -2.26 -4.87 15 20 H 0.27 7.49 8.31 -40.82 -0.34 7.15 15 21 H 0.03 0.71 7.11 -51.93 -0.37 0.34 15 22 H 0.05 1.17 6.44 -51.93 -0.33 0.83 15 23 H 0.13 2.02 8.06 -52.48 -0.42 1.60 15 24 H 0.13 1.32 8.06 -52.48 -0.42 0.90 15 25 H 0.13 1.55 7.61 -52.49 -0.40 1.15 15 26 H 0.41 2.75 9.11 45.56 0.42 3.17 15 27 H 0.11 2.47 9.55 96.90 0.93 3.39 15 LS Contribution 256.07 15.07 3.86 3.86 Total: -1.00 -31.85 256.07 -6.08 -37.93 By element: Atomic # 1 Polarization: 2.18 SS G_CDS: -0.19 Total: 1.99 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -2.79 Total: -13.53 kcal Atomic # 7 Polarization: -27.08 SS G_CDS: 0.77 Total: -26.31 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.80 Total: -15.47 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.67 Total: 16.40 kcal Atomic # 16 Polarization: -2.61 SS G_CDS: -2.26 Total: -4.87 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -31.85 -6.08 -37.93 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307643329.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.747 kcal (2) G-P(sol) polarization free energy of solvation -31.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds