Wall clock time and date at job start Mon Mar 30 2020 05:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31077 * 1 3 3 Si 1.86803 * 119.99981 * 2 1 4 4 H 1.48498 * 109.47084 * 240.00011 * 3 2 1 5 5 H 1.48497 * 109.47149 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46828 * 119.99983 * 3 2 1 7 7 C 1.39701 * 120.00051 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00402 * 164.91804 * 7 2 1 9 9 C 1.40800 * 120.00141 * 344.91479 * 7 2 1 10 10 C 1.36452 * 123.30004 * 339.18456 * 9 7 2 11 11 S 1.69982 * 111.94532 * 179.97438 * 10 9 7 12 12 C 1.75801 * 93.23385 * 0.02562 * 11 10 9 13 13 C 1.39284 * 110.18511 * 359.97438 * 12 11 10 14 14 C 1.40607 * 119.30428 * 180.02562 * 13 12 11 15 15 C 1.37942 * 120.31818 * 359.97438 * 14 13 12 16 16 O 1.35965 * 119.91955 * 179.97438 * 15 14 13 17 17 C 1.39025 * 120.15888 * 359.97438 * 15 14 13 18 18 C 1.37795 * 120.11428 * 0.02819 * 17 15 14 19 19 F 1.35095 * 119.79129 * 179.97438 * 18 17 15 20 20 H 0.96997 * 120.00347 * 0.02562 * 1 2 3 21 21 H 1.08002 * 124.03123 * 359.97438 * 10 9 7 22 22 H 1.08007 * 119.84087 * 179.97438 * 14 13 12 23 23 H 0.96702 * 114.00272 * 270.02170 * 16 15 14 24 24 H 1.07997 * 119.94316 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2448 1.6178 0.0000 4 1 3.0985 1.6964 -1.2125 5 1 1.2798 2.7465 -0.0006 6 1 3.0985 1.6964 1.2125 7 6 2.0093 -1.2098 -0.0005 8 1 3.0614 -1.2259 -0.2439 9 6 1.3417 -2.4084 0.3163 10 6 0.1705 -2.4514 1.0151 11 16 -0.3805 -4.0444 1.2339 12 6 0.9827 -4.7406 0.3691 13 6 1.8368 -3.7329 -0.0726 14 6 2.9951 -4.0784 -0.7910 15 6 3.2822 -5.4016 -1.0546 16 8 4.4042 -5.7265 -1.7505 17 6 2.4270 -6.4038 -0.6106 18 6 1.2885 -6.0790 0.0944 19 9 0.4618 -7.0580 0.5223 20 1 -0.4850 0.8400 -0.0004 21 1 -0.3449 -1.5774 1.3852 22 1 3.6632 -3.3040 -1.1380 23 1 4.2751 -5.7680 -2.7079 24 1 2.6549 -7.4386 -0.8194 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307676816.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:22 Heat of formation + Delta-G solvation = -77.562850 kcal Electronic energy + Delta-G solvation = -13999.196533 eV Core-core repulsion = 11303.257001 eV Total energy + Delta-G solvation = -2695.939531 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.93894 -40.61468 -38.28068 -36.19993 -33.81993 -30.88780 -29.99099 -27.86151 -24.33145 -23.54146 -21.73585 -19.56642 -18.71760 -18.24656 -17.56651 -17.15282 -16.77177 -16.62834 -15.79567 -15.52992 -15.06363 -14.49712 -14.06547 -13.79530 -13.37374 -13.06345 -12.81718 -12.64496 -12.41908 -12.05611 -11.68684 -11.53773 -11.33523 -11.02524 -10.16274 -9.30339 -8.68338 -8.50519 -6.31704 -0.08456 0.03957 0.94582 1.28146 1.39453 1.50759 1.79612 1.85894 2.21448 2.48984 2.97200 3.29484 3.47530 3.81417 4.08366 4.28776 4.64970 4.79493 5.04560 5.13070 5.17794 5.29976 5.58081 5.77842 5.91069 6.43836 6.76561 6.87473 6.88248 8.35752 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.028058 B = 0.009042 C = 0.006946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.701307 B = 3096.054700 C = 4029.840160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.028 3.972 3 Si 0.986 3.014 4 H -0.256 1.256 5 H -0.271 1.271 6 H -0.262 1.262 7 C -0.464 4.464 8 H 0.083 0.917 9 C 0.056 3.944 10 C -0.384 4.384 11 S 0.079 5.921 12 C -0.207 4.207 13 C -0.050 4.050 14 C -0.117 4.117 15 C 0.126 3.874 16 O -0.492 6.492 17 C -0.162 4.162 18 C 0.125 3.875 19 F -0.138 7.138 20 H 0.286 0.714 21 H 0.141 0.859 22 H 0.137 0.863 23 H 0.413 0.587 24 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.611 -6.418 -3.346 8.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.186 4.186 3 Si 0.807 3.193 4 H -0.180 1.180 5 H -0.196 1.196 6 H -0.187 1.187 7 C -0.497 4.497 8 H 0.101 0.899 9 C 0.047 3.953 10 C -0.520 4.520 11 S 0.343 5.657 12 C -0.323 4.323 13 C -0.061 4.061 14 C -0.137 4.137 15 C 0.077 3.923 16 O -0.305 6.305 17 C -0.184 4.184 18 C 0.099 3.901 19 F -0.117 7.117 20 H 0.096 0.904 21 H 0.159 0.841 22 H 0.154 0.846 23 H 0.272 0.728 24 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 3.309 -6.803 -2.050 7.838 hybrid contribution 0.730 1.492 -0.927 1.902 sum 4.038 -5.311 -2.977 7.306 Atomic orbital electron populations 1.69944 1.08966 1.30196 1.36303 1.26725 0.95549 1.04478 0.91870 0.85174 0.78571 0.75430 0.80107 1.17955 1.19591 1.18672 1.19257 0.97184 0.91014 1.42206 0.89886 1.17708 0.93400 0.90943 0.93288 1.24296 1.08908 0.98213 1.20597 1.81667 1.24552 0.99436 1.60058 1.22955 1.03467 0.95960 1.09935 1.19498 0.95181 0.92782 0.98629 1.21292 0.95740 0.96718 0.99966 1.17523 0.87367 0.89700 0.97665 1.84784 1.29467 1.91440 1.24834 1.21204 0.92853 1.02140 1.02166 1.16784 0.91018 0.81739 1.00518 1.91453 1.71200 1.60793 1.88208 0.90404 0.84137 0.84564 0.72807 0.80965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.71 10.89 21.80 0.24 -43.47 14 2 C 0.03 1.39 5.31 85.16 0.45 1.84 14 3 Si 0.99 37.92 29.59 68.60 2.03 39.95 14 4 H -0.26 -9.32 7.11 99.48 0.71 -8.62 14 5 H -0.27 -10.01 7.11 99.48 0.71 -9.30 14 6 H -0.26 -9.92 7.11 99.48 0.71 -9.22 14 7 C -0.46 -24.48 9.06 23.25 0.21 -24.27 14 8 H 0.08 4.10 7.66 -2.91 -0.02 4.08 14 9 C 0.06 2.98 5.69 -20.87 -0.12 2.86 14 10 C -0.38 -20.70 9.51 67.40 0.64 -20.06 14 11 S 0.08 3.67 22.96 -56.49 -1.30 2.37 14 12 C -0.21 -9.26 6.42 22.95 0.15 -9.12 14 13 C -0.05 -2.36 6.02 -20.25 -0.12 -2.48 14 14 C -0.12 -4.57 9.80 22.78 0.22 -4.34 14 15 C 0.13 4.02 6.68 22.39 0.15 4.17 14 16 O -0.49 -12.16 13.50 -93.16 -1.26 -13.42 14 17 C -0.16 -5.06 9.94 22.35 0.22 -4.84 14 18 C 0.12 4.70 7.32 22.60 0.17 4.87 14 19 F -0.14 -4.97 17.26 44.97 0.78 -4.20 14 20 H 0.29 13.74 8.30 -92.71 -0.77 12.97 14 21 H 0.14 8.08 6.31 -2.91 -0.02 8.06 14 22 H 0.14 5.07 7.84 -2.91 -0.02 5.05 14 23 H 0.41 5.68 9.06 -74.06 -0.67 5.01 14 24 H 0.17 4.07 8.06 -2.91 -0.02 4.05 14 Total: -1.00 -61.09 238.50 3.05 -58.04 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 0.59 Total: 12.09 kcal Atomic # 6 Polarization: -53.33 SS G_CDS: 1.97 Total: -51.36 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: 0.24 Total: -43.47 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -1.26 Total: -13.42 kcal Atomic # 9 Polarization: -4.97 SS G_CDS: 0.78 Total: -4.20 kcal Atomic # 14 Polarization: 37.92 SS G_CDS: 2.03 Total: 39.95 kcal Atomic # 16 Polarization: 3.67 SS G_CDS: -1.30 Total: 2.37 kcal Total: -61.09 3.05 -58.04 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307676816.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.524 kcal (2) G-P(sol) polarization free energy of solvation -61.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds